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Axe 1: Organisation et régulation des génomes

ANAIS: Analysis of NimbleGen Arrays Interface

http://anais.versailles.inra.fr

Adeline Simon¹, Eric Biot²

¹UR1290 BIOGER−CPP, INRA, Grignon

²Institut Jean-Pierre Bourgin, UMR1318, INRA-AgroParisTech, Versailles, France

Contact: [e-mail]

Publication : Simon A, Biot E. (2010). ANAIS: Analysis of NimbleGen Arrays Interface. Bioinformatics 2010 Oct; 26(19):2468-9.
Summary: ANAIS is a user-friendly web-based tool for the processing of NimbleGen expression data. The interface reads single-channel microarray files generated by NimbleGen platforms and produces easily interpretable graphical and numerical results. It provides biologists six turnkey analysis modules—normalization, probe to gene, quality controls, differential expression, detection, queries and clustering—to explore quickly, freely and without the need for computer programming, NimbleGen transcriptome data.
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  3 citing articles :
  

Title : Effector diversification within compartments of the Leptosphaeria maculans genome affected by Repeat-Induced Point mutations.

Author(s): Rouxel T. et al.

Source : Nat Commun. 2011 Feb;2:202.

Title : Genomic Analysis of the Necrotrophic Fungal Pathogens Sclerotinia sclerotiorum and Botrytis cinerea

Author(s): Amselem A. et al.

Source: PLoS Genetics. 2011 Aug;7(8):e1002230
Title : HdfR is a regulator in Photorhabdus luminescens that modulates metabolism and symbiosis with the nematode Heterorhabditis

Author(s) : Easom CA. and Clarke DJ.

Source : Environmental Microbiology (2012) 14: 953