Instream Flow Council Instream flow and stream ecology literature OctoberApril 104, 2016 hb



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Brown, S.K., K.R. Buja, S.H. Jury, M.E. Monaco, and A. Banner. 2000. Habitat suitability index models for eight fish and invertebrate species in Casco and Sheepscot bays, Maine. North American Journal of Fisheries Management 20: 408-435.
Brown, T.C. 2004. The marginal economic value of streamflow from National Forests. Discussion Paper DP-04-1, USDA Forest Service Proceedings RMRS-4851. Rocky Mountain Research Station, Fort Collins, Colorado, USA.
Brown, T.G., and G.F. Hartman. 1988. Contribution of seasonally flooded lands and minor tributaries to the production of coho salmon in Carnation Creek, British Columbia. Transactions of the American Fisheries Society 117: 5546-551.
Brunger Lipsey, T.S., W.A. Hubert, and F.J. Rahel. 2005. Relationships of elevation, channel slope, and stream width to occurrences of native fishes at the Great Plains-Rocky Mountains interface. Journal of Freshwater Ecology 20: 695-705.
Brunke, M., and T. Gonser. 1997. The ecological significance of exchange processes between rivers and groundwater. Freshwater Biol. 37: 1-33.
Brunke, M., E. Hoehn, and T. Gonser. 2003. Patchiness of river-groundwater interactions within two floodplain landscapes and diversity of aquatic invertebrate communities. Ecosystems 6: 707-722.
Brunke, M., A. Hoffmann, and M. Pusch. 2001. Use of mesohabitat-specific relationships between flow velocity and river discharge to assess invertebrate minimum flow requirements. Regulated. Rivers: Research &. Management. 17 (6): 667-676.
Bruno, M.C., and A. Siviglia. 2012. Assessing impacts of dam operations – Interdisciplinary approaches for sustainable river management. River Research and Applications 28: 675-677.
Bruns, D.A. 2005. Macroinvertebrate response to land cover, habitat, and water chemistry in a mining-impacted river ecosystem::a GIS watershed analysis. Aquatic Sciences 6: 403-423.
Bruns, D.A., G.W. Minshall, C.E. Cushing, K.W. Cummins, J.T. Brock, and R.L. Vannote. 1984. Tributaries as modifiers of the river continuum concept - analysis by polar ordination and regression models. Archiv fur Hydrobiologie 99: 208-220.
Brussock, P.P., A.V. Brown, and J.C. Dixon. 1985. Channel form and stream ecosystem models. Water Res. Bull. 21: 859-866.
Brusven, M.A., W.R. Meehan, and J.F. Ward. 1986. Summer use of simulated undercut banks by juvenile chinook salmon in an artificial Idaho channel. North American Journal of Fisheries Management 6 (1): 32-37.
Bryant, M.D., M.D. Lukey, J.P. McDonell, R.A. Gubernick, and R.S. Aho. 2009. Seasonal movement of Dolly Varden and cutthroat trout with respect to stream discharge in a second-order stream in southeast Alaska. North American Journal of Fisheries Management 29 (6): 1728-1742.
Buckmeier, D.L., N.G. Smith, and D.J. Daugherty. 2013. Alligator gar movement and macrohabitat use in the lower Trinity River, Texas. Transactions of the American Fisheries Society 142 (4): 1025-1035. Doi: 10.1080/00028487.2013.797494.
Budy, P., G.P. Thiede, N. Bouwes, C.E. Petrosky, and H. Schaller. 2002. Evidence linking delayed mortality of Snake River salmon to their earlier hydrosystem experience. North American Journal of Fisheries Management 22: 35-51.
Budy, P., G.P. Thiede, P. McHugh, E.S. Hansen, and J. Wood. 2008. Exploring the relative influence of biotic interactions and environmental conditions on the abundance and distribution of exotic brown trout (Salmo trutta) in a high mountain stream. Ecology of Freshwater Fish 17: 554-566.
Budy, P., S. Wood, and B. Roper. 2012. A study of the spawning ecology and early life history survival of Bonneville cutthroat trout. North American Journal of Fisheries Management 32 (3): 436-449. Doi: 10.1080/02755947.2012.67945.
Buehrens, T.W. 2011. Growth, movement, survival, and spawning habitat of Coastal Cutthroat Trout. Master’s thesis, University of Washington, Seattle. Available: fish.washington.edu/research/publications/ms.phd/buehrens_T_MS.SP11.pdf.
Buehrens, T.W., J. Glasgow, C.O. Ostberg, and T.P. Quinn. 2013. Spatial segregation of spawning habitat limits hybridization between sympatric native steelhead and coastal cutthroat trout. Transactions of the American Fisheries Society 142 (1): 221-233. Doi: 10.1080/00028487.2012.728165.
Buehrens, T.W., P. Kiffney, G.R. Pess, T.R. Bennett, S.M. Naman, G. Brooks, and T.P. Quinn. 2014. Increasing juvenile coho salmon densities during early recolonization have not affected resident coastal cutthroat trout growth, movement, or survival. North American Journal of Fisheries Management 34 (5): 892-907. Doi: 10.1080/02766947.2014.923071.
Buffam, I., J.N. Galloway, L.K. Blumn and K.J. McGlathery. 2001. A stormflow/baseflow comparison of dissolved organic matter concentrations and bioavailability in an Appalachian stream. Biogeochemistry 53: 269-306. Doi: 10.1023/A:1010643432253.
Buffin-Belanger, T., S. Rice, I. Reid, and J. Lancaster. 2006. Spatial heterogeneity of near-bed hydraulics above a patch of river gravel. Water Resour. Res. 42: W04413. Doi: 10.1029/2005WR004070.
Buffington, J.M., and D.R. Montgomery. 1997. A systematic analysis of eight decades of incipient motion studies, with special reference to gravel-bedded rivers. Water Resour. Res. 33: 1993-2029.
Buffington, J.M., and D.R. Montgomery. 1999a. Effects of hydraulic roughness on surface textures of gravel-bed rivers. Water Resources Research 35 (11): 3507-3521. Doi:10.1029/1999WR00138.
Buffington, J.M., and D.R. Montgomery. 1999b. Effects of sediment supply on surface textures of gravel-bed rivers. Water Resour. Res. 35 (11): 3523-3530. Doi:10.1029/1999WR00232.
Buffington, J.M., D.R. Montgomery, and H.M. Greenberg. 2004. Basin-scale availability of salmonid spawning gravel as influenced by channel type and hydraulic roughness in mountain catchments. Canadian Journal of Fisheries and Aquatic Sciences 61 (11): 2085-2096. Doi:10.1139/f04-141.
Buffington, J.M., R.D. Woodsmith, D.B. Booth, and D.R. Montgomery. 2003. Fluvial processes in Puget Sound rivers and the Pacific Northwest. Pages 46-78 in: D.R. Montgomery, S. Bolton, D.B. Booth, and L. Wall (editors), Restoration of Puget Sound rivers. University of Washington Press, Seattle, WA.
Bugert, R.M. 1985. Microhabitat selection of juvenile salmonids in response to stream cover alteration and predation. M.S. thesis, University of Idaho, Moscow, Idaho. 95 pp.
Bugert, R.M., and T.C. Bjornn. 1991. Habitat use by steelhead and coho salmon and their responses to predators and cover in laboratory streams. Transactions of the American Fisheries Society 120 (4): 486-493.
Bugert, R.M., T.C. Bjornn, and W.R. Meehan. 1991. Summer habitat use by young salmonids and their responses to cover and predators in a small southeast Alaska stream. Transactions of the American Fisheries Society 120 (4): 474485.
Buijse, A.D., H. Coops, M. Staras, L.H. Jans, G.J. Van Geest, R.E. Grifts, B.W. Ibelings, W. Oosterber, and F.C.J.M. Roozen. 2002. Restoration strategies for river floodplains along large lowland rivers in Europe. Freshwater Biology 47: 889-907.
Buisson, L., L. Blane, and G. Grenouillet. 2008. Modelling stream fish species distribution in a river network: the relative effects of temperature versus physical factors. Ecology of Freshwater Fish 17: 244-257.
Bukaveckas, P.A. 2007. Effects of channel restoration on water velocity, transient storage, and nutrient uptake in a channelized stream. Environmental Science and Technology 41 (5): 1570-1576. Doi: 10.1020/er061618x.
Bulger, A.G., and D.R. Edds. 2001. Population structure and habitat use in Neosho madtom (Noturus placidus). Southwestern Naturalist 46: 8-15.

Bulger, A.J., B.P. Hayden, M.E. Monaco, D.M. Nelson, and M.G. McCormick-Ray. 1993. Biologically-based estuarine salinity zones derived from multivariate analysis. Estuaries 16: 311-322.


Bullock, A., A. Gustard, and E.S. Granger. 1991. Instream flow requirements of aquatic ecology in two British rivers. Report No. 115. Institute of Hydrology: Wallingford.
Bult, T.P., R.L. Haedrich, and D.C. Schneider. 1998. New technique describing spatial scaling and habitat selection in riverine habitats. Regulated Rivers: Research and Management 14: 107-118.
Bult, T.P., S.C. Riley, R.L. Haedrich, R.J. Gibson, and J. Heggenes. 1999. Density-dependent habitat selection by juvenile Atlantic salmon (Salmo salar) in experimental riverine habitats. Canadian Journal of Fisheries and Aquatic Sciences 56:1298-1306.
Bunn, S.E. 1993. Riparian-stream linkages: research needs for the protection of in-stream values. Australian Biologist 6: 46-51.
Bunn, S.E. 1999. The challenges of sustainable water use and wetland management. Pages 14-22 in: water: Wet or Dry? Proceedings of the Water and Wetlands Conference. Nature Conservation Council of NSW, Sydney, Australia.
Bunn, S.E., E.G. Abal, M.J. Smith, S.C. Choy, C.S. Fellows, B.D. Harch, M.J. Kennard, and F. Sheldon. 2010. Integration of science and monitoring of river ecosystem health to guide investments in catchment protection and rehabilitation. Freshwater Biology 55 (Suppl. 1): 223-240. Doi: 10.1111/j.1365-2427.2009.02375.x.
Bunn, S.E., and A.H. Arthington. 2002. Basic principles and ecological consequences of altered flow regimes for aquatic biodiversity. Environmental Management 30: 492-507. Doi:10.1007/s00267-002-2737-0. PMID:12481916.
Bunn, S.E., P.M. Davs, and T.D. Mosisch. 1999. Ecosystem measures of river health and their response to riparian and catchment degradation. Freshwater Biology 41:33-345.
Bunn, S.E., M.C. Thoms, S.K. Hamilton, and S.J. Capon. 2006. Flow variability in dryland rivers: boom, bust, and the bits in between. River Research and Applications 22: 179-186.
Bunt, C.M., and S.J. Cooke. 2001. Post-spawn movements and habitat use by greater redhorse, Moxostoma valenciennesi. Ecology of Freshwater Fish 10: 57-60.
Bunt, C.M., S.J. Cooke, C. Katapodis, and R.S. McKinley. 1999. Movement and summer habitat of brown trout (Salmo trutta) below a pulsed discharge hydroelectric generating station. Regulated Rivers: Research and Management 15 (5): 395-403. Doi: 10.1002/(SICI)1099-1646(199909/10)15:5<395::AID-RRR556>3.0.CO:2-1.
Bunt, C.M., B.T. van Poorten, and W. Wong. 2001, Denil fishway utilization patterns and passage of several warmwater species relative to seasonal, thermal and hydraulic dynamics. Ecology of Freshwater Fish 10: 212-219.
Bunte, K. 2004. State of the science review. Gravel migration and augmentation below hydroelectric dams: a geomorphic perspective. Report of Colorado State University, Engineering Research Center to U.S. Forest Service Stream Systems Technology Center. Fort Collins, Colorado.
Burdick, S.M., D.A. Hewitt, J.E. Rasmussen, B.S. Hayes, E.C. Janney, and A.C. Harris. 2015. Effects of lake surface elevation on shoreline-spawning Lost River Suckers. North American Journal of Fisheries Mangement 15 (3): 478-490. Doi: 10.1080/02755947.2015.1017124.
Burford, D.D., T.E. McMahon, J.E. Cahoon, and M. Blank. 2009. Assessment of trout passage through culverts in a large Montana drainage during summer low flow. North American Journal of Fisheries Management 29: 739-752.
Burgers, H.E., A.M. Schipper, and A.J. Hendriks. 2014. Size relationships of water discharge in rivers: scaling of discharge with catchment area, mains-stem length and precipitation. Hydrol. Process. 28: 5769-5775. Doi: 10.1002/hyp.10087.
Burges, S.J., M.S. Wigmosta, and J.M. Meena. 1998. Hydrological effects of land-use change in a zero-order catchment. ASCE J. Hydrologic Engineering 3 (2): 86-97.
Burgherr, P., J.V. Ward, and C.T. Robinson. 2002. Seasonal variation in zoobenthos across habitat gradients in an alpine glacial floodplain Val Roseg, Swiss Alps. Journal of the North American Benthological Society 21: 561-575.
Burgman, M.A., D.R. Breininger, B.W. Duncan, and S. Ferson. 2001. Setting reliability bounds on habitat suitability indices. Ecological Applications 11: 70-78. Doi: 10.1890?1051-0761(2001)011[0070:SRBOHS]2.0.CO;2
Burke, M., K. Jorde, and J.M. Buffington. 2009. Application of a hierarchical framework for assessing environmental impacts of dam operation: changes in streamflow, bed mobility and recruitment of riparian trees in a western North American river. J. Environ. Manage. 90 S224-S236. Doi: 10.1016/j.jenvman.2008.07.022.
Burla, M., A.M. Baptista, E. Casillas, J.G. Williams, and D.M. Marsh. 2010. The influence of the Columbia River plume on the survival of steelhead (Oncorhynchus mykiss) and Chinook salmon (Oncorhynchus tshawytscha): a numerical exploration. Canadian Journal of Fisheries and Aquatic Sciences 67 (10): 1671-1684.
Burn, D.H., J.M. Buttle, D. Caissie, G. MacCulloch, C. Spence, and K. Stahl. 2008. The processes, patterns and impacts of low flows across Canada. Canadian water Resources Journal 33: 107-124.
Burner, C.J. 1951. Characteristics of spawning nests of Columbia River salmon. Fishery Bulletin 52: 95-110.
Burnett, K.M., G.H. Reeves, S.E. Clarke, and K.R. Christiansen. 2006. Comparing riparian and catchment influences on stream habitat in a forested, montane, landscape. Pages 175-197 in R.M. Hughes, L. Wang, and P.W. Seelbach, editors. Landscape influences on stream habitats and biological assemblages. American Fisheries Society, Symposium 48, Bethesda, Maryland.
Burnett, K.M., G.H. Reeves, D.J. Miller, S. Clarke, K. Vance-Borland, and K. Christiansen. 2007. Distribution of salmon-habitat potential relative to landscape characteristics and implications for conservation. Ecological Applications 17: 66-80.
Burns, A., and K. Walker. 2000. Effects of water level regulation on algal biofilms in the River Murray, South Australia. Regulated Rivers: Research and Management 16: 434-444.
Burns, J.W. 1971. The carrying capacity for juvenile salmonids in some northern California streams. California Fish and Game 57 (1): 44-57.
Burroughs, B.A. 2007. The effects of dam removal on fluvial geomorphology and fish. Doctoral dissertation. Michigan State University, East Lansing.
Burroughs, B.A., D.B. Hayes, K.D. Klomp, J.F. Hansen, and J. Mistak. 2009. Effects of Stronach Dam removal on fluvial geomorphology in the Pine River, Michigan, United States. Geomorphology 110: 96-107.

Burroughs, B.A., D.B. Hayes, K.D. Klomp, J.F. Hansen, and J. Mistak. 2010. The effects of the Stronach Dam removal on fish in the Pine River, Manistee County, Michigan. Transactions of the American Fisheries Society 139 (5): 1595-1613.


Burt, D.W., and J.H. Mundie. 1986. Case histories of regulated stream flow and its effects on salmonid populations. Canadian Technical Report of Fisheries and Aquatic Sciences 1477: 98 pp.
Burton, R.A., and T.A. Wesche. 1974. Relationship of duration flows and selected watershed parameters to the standing stock estimates of trout populations. University of Wyoming, Water Resources Series Number 52, Laramie, Wyoming.
Busch, D.E., and S.D. Smith. 1995. Mechanisms associated with the decline of woody species in riparian ecosystems of the southwest U.S. Ecological Monographs 65: 1433-1442.
Busch, S.E., N.L. Ingraham, and S.S. Smith. 1992. Water uptake in woody phreatophytes of the southwestern U.S.: A stable isotope study. Ecological Applications 2: 450-459.
Busch, W.-D.N., R.L. Scholl, and W.L. Hartman. 1975. Environmental factors affecting the strength of walleye (Stizostedion vitreum vitreum) year-classes in western Lake Erie, 1960-1970. Journal of the Fisheries Research Board of Canada 32: 1733-1743. Doi: 10.1139/f75-207.
Bushaw-Newton, K.L., D.D. Hart, K.E. Pizzuto, J.R. Thomson, J, Egan, J.T. Ashley, T.E. Johnson, R.J Horwitz, M. Keeley, J. Lawrence, D. Charles, C. Getenby, D.A. Kreeger, T. Nithengale, R.L. Thomas, and D.J. Velinsky. 2002. An integrative approach towards understanding ecological responses to dam removal – The Manatawny Creek study. Journal of the American Water Resources Association 38 (6): 1581-1599.
Busse, L.B., J.C. Simpson, and S.D. Cooper. 2006. Relationships among nutrients, algae, and land use in urbanized southern California streams. Canadian Journal of Fisheries and Aquatic Sciences 63 (12): 2621-2638.
Bustard, D.R., and D.W. Narver. 1975. Preferences of juvenile coho salmon (Oncorhynchus kisutch) and cutthroat trout (Salmo clarki) relative to simulated alteration of winter habitat. Journal of the Fisheries Research Board of Canada 32: 681687.
Bustard, D.R., and D.W. Narver. 1975. Aspects of the winter ecology of juvenile coho salmon (Oncorhynchus kisutch) and steelhead trout (Salmo gairdneri). Journal of the Fisheries Research Board of Canada 32: 667-680.
Butler, R. 1979. Anchor ice, its formation and effects on aquatic life. Science in Agriculture 26 (2).
Butler, S.E., and D.H. Wahl. 2010. Common carp distribution, movements, and habitat use in a river impounded by multiple low-head dams. Transactions of the American Fisheries Society 139 (4): 1121-1135. Doi: 10.1577/T09-134.1
Buttle, J.M. 1994. Hydrological response to reforestation in the Ganaraska River basin, southern Ontario. Can. Geogr. 38: 240-253.
Buttle, J.M. 1996. Identifying hydrological responses to basin restoration: an example from southern Ontario. Pp. 5-13 in: J.J. McDonnell, J.B. Stribling, L.R. Neville, and D.J. Leopold, eds., Watershed restoration management: physical, chemical, and biological considerations. American Water Resources Association, Herndon, Virginia.
Buttle, J.M. 2006. Mapping first order controls on streamflow from drainage basins: the T3 template. Hydrological Processes 20: 3415-3422.
Buttle, J.M., and R.A. Metcalfe. 2000. Boreal forest disturbance and streamflow response, northeastern Ontario. Canadian Journal of Fisheries and Aquatic Sciences 57 (Suppl 2): 5-18.
Buyukates, Y., and D.L. Roelke. 2005. Influence of pulsed inflows and nutrient loading on zooplankton and phytoplankton community structure and biomass in microcosm experiments using estuarine assemblages. Hydrobiologia 548 (1): 233-249. Doi: 10.1007/s10750-005-5195-x.
Byers, C.R., R.K. Steinhorst, and P.R. Krausman. 1984. Clarification of a technique for analysis of utilization-availability data. Journal of Wildlife Management 48: 1050-1053.
Byrd, T.C., D.J. Furbish, and J. Warburton. 2000. Estimating depth-averaged velocities in rough channels. Earth Surface Processes and Landforms 25: 267-273.
Byrne, C.J., R. Poole, G. Rogan, M. Dillane, and K.F. Whelan. 2003. Temporal and environmental influences on the variation in Atlantic salmon smolt migration in the Burrishoole system 1970-2000. J. Fish Biol. 63 (6): 1552-1564. Doi: 10.1111/j.1095-8649.2003.00266.x
Byrne, C.J., R. Poole, M. Dillane, G. Rogan, and K.F. Whelan. 2004. Temporal and environmental influences on the variation in sea trout (Salmo trutta L.) smolt migration in the Burrishoole system in the west of Ireland from 1971-2000. Fish. Res. 66 (1): 85-94. Doi: 10.1016/S0165-7836(03)00146-2.
Cada, G.F., M.D. Deacon, S.V. Mitz, and M.S. Bevelheimer. 1993. Review of information pertaining to the effect of water velocity on the survival of juvenile salmon and steelhead in the Columbia River basin. Northwest Power Planning Council, Portland, Oregon.
Cada, G.F., M.D. Deacon, S.V. Mitz, and M.S. Bevelheimer. 1995. Effects of water velocity on the survival of downstream-migrating juvenile salmon and steelhead: a review with emphasis on the Columbia River. Reviews in Fisheries Science 5: 131-183.
Cadwallader, P.L. 1978. Some causes of the decline in range and abundance of native fish in the Murray-Darling river system. Proceedings of the Royal Society of Victoria 90: 211-224.
Cai, L., M. Fang, D. Johnson, S. Lin, Z. Tu, G. Liu, and Y. Huang. 2014. Interrelationships between feeding, food deprivation and swimming performance in juvenile grass carp. Aquatic Biology 20: 69-76.
Cai, L., D. Johnson, P. Mandal, M. Gan, X. Yuan, Z. Tu, and Y. Huang. 2015. Effect of exhaustive exercise on the swimming capability and metabolism of juvenile Siberian sturgeon. Transactions of the American Fisheries Society 144 (3): 532-538. Doi: 10.1080/00028487.2015.1007163.
Cai, L., G. Liu, R. Taupier, M. Fang, D. Johnson, Z. Tu, and Y. Huang. 2014. Effect of temperature on swimming performance of juvenile Schizothorax prenanti. Fish Physiology and Biochemistry 40: 491-498.
Cai, L., R. Taupier, D. Johnson, Z. Tu, G. Liu, and Y. Huang. 2013. Swimming capability and swimming behavior of juvenile Acipenser schrenckii. Journal of Experimental Zoology Part A Ecological Genetics and Physiology 319: 149-155.
Cain, M.L., T.E. Lauer, and J.K. Lau. 2008. Habitat use of grass pickerel Esox americanus vermiculatus in Indiana streams. American Midland Naturalist 160: 96-109.
Caissie, D., and N. El-Jabi. 1995. Comparison and regionalization of hydrologically-based instream flow techniques in Atlantic Canada. Canadian Journal of Civil Engineering 22: 235-246.
Caissie, D., and N. El-Jabi. 2003. Instream flow assessment: from holistic approaches to habitat modelling. Canadian Water Resources Journal 28: 173-183.
Caissie, D., N. El-Jabi, and C. Hebert. 2007. Comparison of hydrologically based instream flow methods using a resampling technique. Canadian Journal of Civil Engineering 34: 66-74.
Caissie, J., D. Caissie, and N. El-Jabi. 2014. Hydrologically based environmental flow methods applied to river in the maritime provinces(Canada). River Research and Applications doi: 10.1002/rra.2772.
Cake, E.W., Jr. 1983. Habitat suitability index models: Gulf of Mexico American oyster. U.S. Fish and Wildlife Service. FWS/OBS-82/10.57. 37 pp.
Caldwell, J.E., and C. Gowan. 1988. The role of professional judgment in the development of category I criteria curves. Pages 91101 in: Bovee, K., and J.R. Zuboy, editors. Proceedings of a workshop on the development and evaluation of habitat suitability criteria. U.S. Fish and Wildlife Service, Biological Report 88 (11), Washington, D.C.
Calkins, D.J. 1989. Winter habitats of Atlantic salmon, brook trout, brown trout and rainbow trout - a literature review. U.S. Army Corps of Engineers, Cold Regions Research and Engineering Laboratory, Special Report 89-34 (October 1989): 9 p.
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Calkins, D.J. 1993. Physical effects of river ice. Pp. 4-6 in: T.D. Prowse and N.C. Gridley, editors. Environmental aspects of river ice. National Hydrology Research Institute, Science Report 5, Saskatoon, Saskatchewan.
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