Instream Flow Council Instream flow and stream ecology literature May 26, 2014 hb



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Stanford, J.A., and J.V. Ward. 1993. An ecosystem perspective of alluvial rivers: connectivity and the hyporheic corridor. Journal of the North American Benthological Society 12: 48-62.
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Starrett, W.C. 1951. Some factors affecting the abundance of minnows in the Des Moines River, Iowa. Ecology 32: 13-27.
Statzner, B., M.F. Arens, J.Y. Champagne, R. Morel, and E. Herouin. 1999. Silk-producing stream insects and gravel erosion: Significant biological effects on critical shear stress. Water Resources Research 35: 3495-3506.
Statzner, B., J.A. Gore, and V.H. Resh. 1988. Hydraulic stream ecology: observed patterns and potential applications. Journal of the North American Benthological Society 17: 324-337.
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Statzner, B., and T.F. Holm. 1982. Morphological adaptations of benthic invertebrates to stream flow – an old question studied by means of a new technique (Laser Doppler Anemometry). Oecologia 53: 290-292.
Stauffer, J.C., and R.M. Goldstein. 1997. Comparison of three qualitative habitat indices and their applicability to prairie streams. North American Journal of Fisheries Management 17: 348-361.
Stauffer, J.C., R.M. Goldstein, and R.M. Newman. 2000. Relationship of wooded riparian zones and runoff potential to fish community composition in agricultural streams. Canadian Journal of Fisheries and Aquatic Sciences 57 (2): 307-316.
Stauffer, J.R., Jr., J.M. Bolz, K.A. Kellogg, and E.S. van Snik. 1996. Microhabitat partitioning in a diverse assemblage of darters in the Allegheny River system. Environmental Biology of Fishes 46: 37-44.
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Stednick, J.D. 1996. Monitoring the effect of timber harvest on annual water yield. Journal of Hydrology 176: 79-95.
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Stefferud, J.A. 1993. Spawning season and microhabitat use by California golden trout (Oncorhynchus mykiss aquabonita) in the southern Sierra Nevada. California Fish and Game 79: 133-144.
Stefferud, J.A., and S.E. Stefferud. 1998. Influence of low flows on the abundance of fish in the upper San Pedro River, Arizona. Pages 167-180 in: G.J. Gottfried, C.B. Edminster, and M.C. Dillon, editors. Cross-border waters: fragile treasures for the 21st Century. Ninth U.S./Mexico Border States Conference on Recreation, Parks, and Wildlife, 3-6 June 1998. USDA Forest Service. Rocky Mountain Research Station. Proceedings RMRS-P-5. Fort Collins, Colorado.
Stefferud, J., D.L. Propst, and K.B. Gido. 2011. Spatially variable response of native fish assemblages to discharge, nonnative predators and habitat characteristics in an arid-land river. Freshwater Biology 56: 1403-1416. Doi:10.1111/j.1365-2427.2011.02577.x.
Steffler, P. 2000. River 2D. Two dimensional depth averaged model of river hydrodynamics and fish habitat. Users manual. University of Alberta.
Steffler, P., and J. Blackburn. 2002. Two-dimensional depth-averaged model of river hydrodynamics and fish habitat: introduction to depth-averaged modeling and users manual. University of Alberta, Alberta, Canada. http://www.river2d.ualberta.ca.software/River2D.pdf.
Stehr, W.M., and W.J. Branson. 1938. An ecological study of an intermittent stream. Ecology 19: 294-310, 329, 404.
Steiger, J., E. Tabacchi, S. Dufour, D. Corenblit, and J.L. Peiry. 2005. Hydrogeomorphic processes affecting riparian habitat within alluvial channel-floodplain river systems: a review for the temperate zone. River Research and Applications 14: 13-23.
Steingrimsson, S.O., and J.W.A. Grant. 1999. Allometry of territory-size and metabolic rate as predictors of self-thinning in young-of-the-year Atlantic salmon. Journal of Animal Ecology 68: 17-26. Doi: 10.1046/j.365-2656.1999.00261.x.
Steingrimsson, S.O., and J.W.A. Grant. 2008. Multiple central-place territories in wild young-of-the-year Atlantic salmon Salmo salar. J. Anim. Ecol. 77 (3): 448-457. Doi: 10.1111/j.1365-2656.2008.01360.x.
Sternberg, D., S.R. Balcombe, J.C. Marshall, J. Lobegeiger, and A.H. Arthington. 2012. Subtle boom and bust response of Macquaria ambigua to flooding in an Australian dryland river. Environmental Biology of Fishes 93: 95-104.
Sternecker, K., and J. Geist. 2010. The effects of stream substratum composition on the emergence of salmonid fry. Ecol. Freshw. Fish 19 (4): 537-544. Doi: 10.1111/j.1600-0633.2010.00432.x.
Steuer, J.J., K.A. Stensvold, and M.B. Gregory. 2010. Determination of biological significant hydrologic condition metrics in urbanizing watersheds: an empirical analysis over a range of environmental settings. Hydrobiologia 654: 27-55.
Stevens, D.E. 1977. Striped bass (Morone saxatilis) year class strength in relation to river flow in the Sacramento-San Joaquin estuary, California. Transactions of the American Fisheries Society 106 (1): 34-42.
Stevens, D.E. and L.W. Miller. 1983. Effects of river flow on abundance of young chinook salmon, American shad, longfin smelt, and delta smelt in the Sacramento-San Joaquin River system. North American Journal of Fisheries Management 3: 425-437.
Stevens, L.E., T.J. Ayers, J.B. Bennett, K. Christensen, M.J.C. Kearsley, V.J. Meretsky, A.M. Phillips III, R.A. Parnell, J. Spence, M.K. Sogge, A.E. Springer, and D.L. Wegner. 2001. Planned flooding and Colorado River riparian trade-offs downstream from Glen canyon Dam, Arizona. Ecological Applications 11: 701-710.
Stevens, L.E., J.C. Schmidt, T.J. Ayers, and B.T. Brown. 1995. Flow regulation, geomorphology, and Colorado River marsh development in the Grand Canyon, Arizona. Ecological Applications 5: 1025-1039.
Stevens, P.W., M.F.D. Greenwood, and D.A. Blewett. 2013. Fish assemblages in the oligohaline stretch of a southwest Florida river during periods of extreme freshwater inflow variation. Transactions of the American Fisheries Society 142 (6): 1644-1658. Doi: 10.1080/00028487.2013.824930.
Stevens, P.W., M.F.D. Greenwood, C.F. Idleberger, and D.A. Blewett. 2010. Mainstem and backwater fish assemblages in the tidal caloosahatchee River: implications for freshwater inflow studies. Estuaries and Coasts 33:1216-1234.
Stevenson, R.J. 1990. Benthic algal community and dynamics in a stream during and after a spate. Journal of the North American Benthological Society 9:277-288.
Stevenson, R.J. 1996. The stimulation and drag of current. Pages 321-341 in: R.J. Stevenson, M.L. Bothwell, and R.L. Lowe, editors. Algal ecology: freshwater benthic ecosystems. Academic Press, New York, New York, USA.
Stewardson, M.J., and C.J. Gippel. 2003. Incorporating flow variability into environmental flow regimes using the Flow Events Method. River Research and Applications 19: 459-472.
Stewardson, M., J.A. Webb, S. de Little, K.A. Miller, N.L. Poff, I. Rutherfurd, and A. Sharpe. 2012. Monitoring and evaluating environmental flows at the basin-scale: A science and management challenge. Pages 1-7 in: J.R. Grove, and I.D. Rutherfurd, editors. Proceedings of the 6th Australian Stream Management Conference: Managing for Extremes. River Basin Management Society.
Steward, A.L., D. von Schiller, K. Tockner, J.C. Marshall, and S.E. Bunn. 2012. When the river runs dry: human and ecological values of dry riverbeds. Frontiers in Ecology and the Environment 10 (4): 202-209. Doi: 10.1890/110136
Stewart, G., R. Anderson, and E. Wohl. 2005. Two-dimensional modeling of habitat suitability as a function of discharge in two Colorado rivers. River Research and Applications 21: 1061-1074. Doi: 10.1002/RRA.868
Stewart, I.T., D.R. Cayan, and M.D. Dettinger. 2004. Changes in snowmelt runoff timing in western North America under a “business as usual” climate change scenario. Climatic Change 62: 217-232.
Stewart, I.T., D.R. Cayan, and M.D. Dettinger. 2005. Changes toward earlier streamflow timing across western North America. Journal of Climate 18: 1136-1155.
Stewart-Koster, B., S.E. Bunn, S.J. Mackay, N.L. Poff, R.J. Naiman, and P.S. Lake. 2010. The use of Bayesian networks to guide investments in flow and catchment restoration for impaired river ecosystems. Freshwater Biology 55: 243-260. doi:10.1111/j.1365-2427.2009.02219.x.
Stickler, M., K. Alfredsen, D.A. Scruton, C. Pennell, A. Harby, and F. Okland. 2007. Mid-winter activity and movement of Atlantic salmon parr during ice formation events in a Norwegian regulated river. Hydrobiologia 582: 81-89. Doi:10.1007/s10750-006-0559-4.
Stickler, M., E.C. Enders, C.J. Pennell, D. Cote, K.T. Alfredsen, and D.A. Scruton. 2008. Habitat use of Atlantic salmon Salmo salar parr in a dynamic winter environment: the influence of anchor-ice dams. Journal of Fish Biology 73: 926-944.
Stier, D.J., and J.H. Crance. 1985. Habitat suitability index models and instream flow suitability curves: American shad. U.S. Fish and Wildlife Service Biological Report 82 (10.88). 34 pp.
Stine, S., D. Gaines, and P. Vorster. 1984. Destruction of riparian systems due to water development in the Mono Lake watershed. Pp. 528-533 in: R.E. Warner and K.L. Hendrix (eds.) California riparian systems: Ecology, conservation, and productive management. Berkeley: University of California Press.
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Stockton, C.W., and G.C. Jacoby. 1976. Long-term surface-water supply and streamflow trends in the Upper Colorado River Basin based on tree ring analyses. Bulletin 18. Lake Powell Research Project, University of California, Los Angeles.
Stockwell, D.A 1989. Nitrogen processes study (NIPS), effect of freshwater inflow on the primary production of a Texas coastal bay system. UTMSI Report to TWDB. University of Texas at Austin, Port Aransas, Texas.
Stoddard, J.L., D.P. Larsen, C.P. Hawkins, R.K. Johnson, and R.H. Norris. 2006. Setting expectations for the ecological condition of streams: the concept of reference condition. Ecological Applications 16: 1267-1276.
Stoddard, J.L., D.V. Peck, S.G. Paulsen, et al. 2005. An ecological assessment of western streams and rivers. Washington, DC: US EPA. EPA 620/R-05/005.
Stoffels, R.J., K.R. Clarke, R.A. Rehwinkel, and B.J. McCarthy. 2014. Response of a floodplain fish community to river-floodplain connectivity: natural versus managed reconnection. Canadian Journal of Fisheries and Aquatic Sciences 71 (2): 236-245. Doi: 10.1139/cjfas-2013-0042.
Stolarski, J. 2007. Age and growth of Appalachian brook trout in relation to life-history and habitat features. M.Sc. Thesis, West Virginia University, Morgantown, W.V.
Stolbov, A.Y., and Y.S. Alikin. 1978. Temperature dependence of active metabolism and swimming speed of the Baikal grayling, Thymallus arcticus baicalensis. Journal of Ichthyology 17: 178-179.
Stoneman, C.L., and M.L. Jones. 2000. The influence of habitat features on the biomass and distribution of three species of southern Ontario stream salmonines. Transactions of the American Fisheries Society 129: 639-657. Doi:10.1577/1548-8659(2000)129<0639:TIOHFO>2.3.CO;2.
Stora, G., and A. Arnoux. 1983. Effects of large freshwater diversions on benthos of a Mediterranean lagoon. Estuaries 6: 115-125.
Storey, R.G., K.W.F. Howard, and D.D. Williams. 2003. Factors controlling riffle-scale hyporheic exchange flows and their seasonal changes in a gaining stream: A three-dimensional groundwater flow model. Water Resour. Res. 39 (2): 1034. Doi: 10.1029/2002WR001367.
Stormer, D.G., and M.J. Maceina. 2009. Habitat use, home range, and movement of shoal bass in Alabama. North American Journal of Fisheries Management 29 (3): 604-613.
Stover, S.C., and D.R. Montgomery. 2001. Channel change and flooding, Skokomish River, Washington. Journal of Hydrology 243 (3-4): 272-286.
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Strange, J.S. 2012. Migration strategies of adult Chinook salmon runs in response to diverse environmental conditions in the Klamath River basin. Transactions of the American Fisheries Society 141 (6): 1622-1636. Doi: 10.1080/00028487.2012.716010.
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Strayer, D.L. 1999. Use of flow refuges by unionid mussels in rivers. Journal of the North American Benthological Society 18: 468-476.
Strayer, D.L., M.L. Pace, N.F. Caraco, J.J. Cole, and S.E.G. Findlay. 2008. Hydrology and grazing jointly control a large-river food web. Ecology 89 (1): 12-18.
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Strobel, B., D.R. Shively, and B.B. Roper. 2009. Salmon carcass movements in forest streams. North America Journal of Fisheries Management 29 (3): 702-714.
Stromberg, J.C. 1993. Instream flow models for mixed deciduous riparian vegetation within a semiarid region. Regulated Rivers: Research & Management 8 (3): 225-235.
Stromberg, J.C. 1997. Growth and survivorship of Fremont cottonwood, Goodding willow, and salt cedar after large floods in central Arizona. Great Basin Naturalist 57: 198-208.
Stromberg, J.C. 2001. Influence of stream flow regime and temperature on growth rate of the riparian tree, Platanu wrightii, in Arizona. Freshwater Biology 46: 227-239.
Stromberg, J.C. 2001. Restoration of riparian vegetation in the southwestern United States: importance of flow regimes and fluvial dynamism. Journal of Arid Environments 49: 17-34.
Stromberg, J.C., V.B. Beauchamp, M.D. Dixon, S.J. Lite, and C. Paradzick. 2007. Importance of low-flow and high-flow characteristics to restoration of riparian vegetation along rivers in arid south-western United States. Freshwater Biology 52: 651-679.
Stromberg, J.C., J. Fry, and D.T. Patten. 1997. Marsh development after large floods in an alluvial, arid-land river. Wetlands 17: 292-300.
Stromberg, J.C., S.J. Lite, R. Marler, C. Paradzick, P.B. Shafroth, D. Shorrock, J.M White, and M.S. White. 2007. Altered stream-flow regimes and invasive plant species: the Tamarix case. Global Ecology and Biogeography 16 (3): 381-393.
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Stromberg, J.C., and D.T. Patten. 1992. Mortality and age of black cottonwood stands along diverted and undiverted streams in the eastern Sierra Nevada, California. Madrono 39: 205-223.
Stromberg, J.C., and D.T. Patten. 1996. Instream flow and cottonwood growth in the eastern Sierra Nevada of California, USA. Regulated Rivers: Research and Management 12: 1-12.
Stromberg, J.C., D.T. Patten, and B.D. Richter. 1991. Flood flows and dynamics of Sonoran riparian forests. Rivers 2 (3): 221-235.
Stromberg, J.C., B.D. Richter, D.T. Patten, and L.G. Wolden. 1993. Response of a Sonoran riparian forest to a 10-year return flood. Great Basin Naturalist 53: 118-130.
Stromberg, J.C., R. Tiller, and B.D. Richter. 1996. Effects of groundwater decline on riparian vegetation of semiarid regions: the San Pedro River, Arizona, USA. Ecological Applications 6: 113-131.
Stromberg, J.C., S.D. Wilkins, and J.A. Tress. 1993. Vegetation-hydrology models: implications for management of Prosopis vetulina (velvet mesquite) riparian ecosystems. Ecological Applications 3: 307-314.
Stromberg, J.C., J.A. Tress, S.D. Wilkins, and Clark. 1992. Response of velvet mesquite to groundwater decline. Journal of Arid Environments 23: 45-58.
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Strydom, N.A., A.K. Whitfield, and A.W. Paterson. 2002. Influence of altered freshwater flow regimes on abundance of larval and juvenile Gilchristella aestuaria (Pisces: Clupeidae) in the upper reaches of two South African estuaries. Marine and Freshwater Research 53: 431-438.
Stoneman, C.L., and M.L. Jones. 2000. The influence of habitat features on the biomass and distribution of three species of southern Ontario salmonines. Transactions of the American Fisheries Society 129 (3): 639-657.
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