Webmaster's Note: As Gerard says below, his Fourth Report came in two parts
Yüklə 3,49 Mb.
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ref|XP_480904.1| putative villin [Oryza sativa (japonica cu... 51 5e-005 ref|XP_793200.1| PREDICTED: similar to advillin, partial [S... 50 8e-005 ref|XP_654224.1| actin-binding protein, putative [Entamoeba... 50 1e-004 >ref|XP_636652.1| villin [Dictyostelium discoideum] gb|EAL63138.1| villin [Dictyostelium discoideum] Length = 1704 Score = 62.8 bits (151), Expect = 2e-008 Identities = 28/79 (35%), Positives = 45/79 (56%) Frame = +1
ID IPID ++W+IE++EK+ HP+++Y QFF +SYI+ Y Y Sbjct: 1279 IDNEALFTIPIDE----------GGRVKVWKIEDYEKIDHPQHLYSQFFSSDSYIVLYTY 1328
K+ H+I++++GRD Sbjct: 1329 --MQNNKEAHVIYYYLGRD 1345 Score = 39.7 bits (91), Expect = 0.14 Identities = 18/31 (58%), Positives = 25/31 (80%) Frame = +2 Query: 593 NDKGTAAYLTVELDETLGSSSTQVRVVQDKE 685 N+KGT+AYLTV+L+E+L + Q RVV +KE Sbjct: 1349 NEKGTSAYLTVDLNESLVGACVQTRVVANKE 1379 ------------------- gnl|ti|818418453 name:POAA-aaa68b01.b1 mate_pair:818418131 (558 letters)
Score E
Sequences producing significant alignments: (bits) Value ref|XP_635839.1| hypothetical protein DDB0188786 [Dictyoste... 86 5e-016 ref|NP_909909.1| hypothetical protein [Oryza sativa] >gi|14... 50 3e-005 gb|AAI02680.1| MGC127960 protein [Bos taurus] >gi|78369322|... 47 4e-004 ref|XP_696610.1| PREDICTED: similar to ARV1 homolog [Danio ... 46 6e-004 emb|CAG12971.1| unnamed protein product [Tetraodon nigrovir... 46 8e-004 ref|XP_546093.2| PREDICTED: similar to ARV1 homolog isoform... 44 0.003 ref|XP_857065.1| PREDICTED: similar to ARV1 homolog isoform... 44 0.003 ref|XP_214713.2| PREDICTED: similar to ARV1 homolog [Rattus... 43 0.005 ref|NP_192060.2| ARV2 [Arabidopsis thaliana] >gi|56540525|g... 42 0.015 emb|CAB77721.1| hypothetical protein [Arabidopsis thaliana] 42 0.015 >ref|XP_635839.1| hypothetical protein DDB0188786 [Dictyostelium discoideum] gb|EAL62332.1| hypothetical protein DDB0188786 [Dictyostelium discoideum] Length = 246 Score = 86.3 bits (212), Expect = 5e-016 Identities = 41/56 (73%), Positives = 49/56 (87%) Frame = -2
RY I+KYNYL+MAIILSSFGKG L+LMMIWD YPF+ G +LN+F+LSSNVVA+K Sbjct: 153 RYPIIKYNYLIMAIILSSFGKGFLVLMMIWD---YPFSFGSILNIFVLSSNVVAIK 205 -------------------- gnl|ti|818418148 name:POAA-aaa68d13.g1 mate_pair:818418469 (551 letters)
Score E
Sequences producing significant alignments: (bits) Value ref|NP_653263.2| proteasome (prosome, macropain) subunit, a... 69 1e-010 ref|XP_547630.2| PREDICTED: similar to proteasome (prosome,... 69 1e-010 ref|XP_344650.2| PREDICTED: similar to Proteasome subunit a... 69 1e-010 sp|Q8TAA3|PSA7L_HUMAN Proteasome subunit alpha type 7-like 69 1e-010 gb|AAH65608.1| Proteasome subunit alpha type 7 [Danio rerio... 67 2e-010 gb|AAP20150.1| alpha 4 subunit of 20S proteasome [Pagrus ma... 67 2e-010 sp|Q9PTW9|PSA7_CARAU Proteasome subunit alpha type 7 (Prote... 67 2e-010 emb|CAG07609.1| unnamed protein product [Tetraodon nigrovir... 67 2e-010 gb|AAO50739.1| similar to Dictyostelium discoideum (Slime m... 64 3e-009 ref|XP_644940.1| hypothetical protein DDB0185059 [Dictyoste... 64 3e-009 >ref|NP_653263.2| proteasome (prosome, macropain) subunit, alpha type, 8 isoform 1 [Homo sapiens] Length = 256 Score = 68.6 bits (166), Expect = 1e-010 Identities = 33/35 (94%), Positives = 34/35 (97%) Frame = -3
MASRYDRAITVFSPDGHLFQVEYA EAV+KGSTAV Sbjct: 1 MASRYDRAITVFSPDGHLFQVEYAQEAVKKGSTAV 35 Score = 52.0 bits (123), Expect = 1e-005 Identities = 24/37 (64%), Positives = 29/37 (78%) Frame = -1 Query: 194 VGVRSKDIIVLAVEKKAAAKLQDPRTVRKIVKLDQHI 84 VG+R +I+VL VEKK+ AKLQD RTVRKI LD H+ Sbjct: 35 VGIRGTNIVVLGVEKKSVAKLQDERTVRKICALDDHV 71 ------------- PP20_Resultat gnl|ti|818418165 name:POAA-aaa68h07.g1 mate_pair:818418487 (622 letters) Score E
Sequences producing significant alignments: (bits) Value ref|XP_641971.1| hypothetical protein DDB0219989 [Dictyoste... 50 5e-005 gb|AAN75564.1| adhesin FhaB [Bordetella avium] 34 0.002 ref|XP_134209.5| PREDICTED: similar to hypothetical protein... 32 0.008 emb|CAF99102.1| unnamed protein product [Tetraodon nigrovir... 41 0.025 emb|CAG03574.1| unnamed protein product [Tetraodon nigrovir... 41 0.025 gb|AAS54041.1| AFR669Wp [Ashbya gossypii ATCC 10895] >gi|45... 39 0.16 ref|NP_200624.1| actin binding [Arabidopsis thaliana] >gi|8... 35 0.29 gb|ABA99826.1| DNA binding protein, putative [Oryza sativa ... 37 0.36 emb|CAJ07767.1| hypothetical protein, conserved [Leishmania... 35 2.3 ref|XP_418733.1| PREDICTED: similar to SH3 domain binding p... 34 3.9 >ref|XP_641971.1| hypothetical protein DDB0219989 [Dictyostelium discoideum] gb|EAL67967.1| random slug cDNA19 protein [Dictyostelium discoideum] Length = 2233
Identities = 19/33 (57%), Positives = 29/33 (87%) Frame = +1
PLV++C+TH N+ + L Q+++S+ENQDYKN+EV Sbjct: 547 PLVTICLTHFNRPNFLKQSIESIENQDYKNFEV 579 --------- gnl|ti|818418175 name:POAA-aaa68j05.g1 mate_pair:818418497 (898 letters)
Score E
Sequences producing significant alignments: (bits) Value ref|XP_645368.1| hypothetical protein DDB0168605 [Dictyoste... 72 3e-011 ref|XP_397358.2| PREDICTED: similar to ENSANGP00000012802 [... 57 1e-006 emb|CAG07415.1| unnamed protein product [Tetraodon nigrovir... 56 1e-006 gb|AAC34385.1| unknown [Takifugu rubripes] 56 2e-006 emb|CAH90723.1| hypothetical protein [Pongo pygmaeus] 55 3e-006 gb|AAH45132.1| Limr-pending-prov protein [Xenopus laevis] 55 3e-006 gb|AAH08337.1| LMBR1L protein [Homo sapiens] 55 3e-006 gb|AAH31550.1| LMBR1L protein [Homo sapiens] >gi|15929116|g... 55 3e-006 gb|AAK63067.1| lipocalin-1 interacting membrane receptor [H... 55 3e-006 ref|XP_509041.1| PREDICTED: similar to LIMR protein [Pan tr... 55 3e-006 >ref|XP_645368.1| hypothetical protein DDB0168605 [Dictyostelium discoideum] gb|AAO51506.1| similar to Dictyostelium discoideum (Slime mold). Histidine kinase A gb|EAL71434.1| hypothetical protein DDB0168605 [Dictyostelium discoideum] Length = 952 Score = 72.0 bits (175), Expect = 3e-011 Identities = 34/50 (68%), Positives = 42/50 (84%) Frame = -2
+Y LLCTVCL+IS++AMLL+PITIISNEI+ +P+ YTQWL RELIF Sbjct: 125 IYIPRLLCTVCLSISISAMLLIPITIISNEIMTTFPSSYYTQWLDRELIF 174 Score = 60.5 bits (145), Expect = 8e-008 Identities = 24/40 (60%), Positives = 31/40 (77%) Frame = -2 Query: 195 ALWNKIFWSANIALFVVLPFCYFFYEAVGFRGDGLLARVE 76 + WNKIFW ANI+LF++LPF YF YE+ G RG LL R++ Sbjct: 175 SFWNKIFWGANISLFIILPFTYFLYESEGIRGRSLLNRIK 214 ----------- gnl|ti|818418520 name:POAA-aaa68n05.b1 mate_pair:818418194 (870 letters)
Score E
Sequences producing significant alignments: (bits) Value gb|EAA73104.1| hypothetical protein FG08249.1 [Gibberella z... 120 8e-026 ref|XP_638984.1| hypothetical protein DDB0185648 [Dictyoste... 104 5e-021 ref|XP_646540.1| hypothetical protein DDB0201947 [Dictyoste... 101 3e-020 ref|XP_638985.1| hypothetical protein DDB0185649 [Dictyoste... 93 1e-017 dbj|BAD93616.1| tyrosine decarboxylase [Tetragenococcus hal... 91 4e-017 dbj|BAE02559.1| tyrosine decarboxylase [Lactobacillus curva... 91 5e-017 gb|EAN10106.1| Pyridoxal-dependent decarboxylase [Enterococ... 91 5e-017 dbj|BAE02560.1| tyrosine decarboxylase [Lactobacillus curva... 86 1e-015 ref|NP_929587.1| hypothetical protein plu2341 [Photorhabdus... 80 7e-014 ref|NP_814388.1| decarboxylase, putative [Enterococcus faec... 80 1e-013 >gb|EAA73104.1| hypothetical protein FG08249.1 [Gibberella zeae PH-1] ref|XP_388425.1| hypothetical protein FG08249.1 [Gibberella zeae PH-1] Length = 995
Identities = 67/190 (35%), Positives = 104/190 (54%), Gaps = 10/190 (5%) Frame = +2
V VV IGS GA+D + EV LR++ + E F +HADA+WGGY T LNP Sbjct: 335 VFAVVAIIGSTEEGAVDRLTEVLQLRKKFQDEHGLSFLVHADAAWGGYFATMLNPDRRYS 394
+P P P++ K + AD+ ++DPHKAGYI +P+GS+ +++ RMR Sbjct: 395 VEEQTDTKPEPEWYLDPKTVEDIKAMAE---ADSITVDPHKAGYIPYPAGSLVYRDGRMR 451
++ + Y + G Y ++ +PGAA ++ + ++ GL QG+G L+G+A FT+ Sbjct: 452 HLVTWSGPYLSQGSAENIGVYGVEGRQPGAAAMSAWFSNQTIGLHHQGYGKLLGEATFTS 511
+ A A M
Sbjct: 512 ARISAHYATM 521 ---------- gnl|ti|818418529 name:POAA-aaa68p07.b1 mate_pair:818418202 (445 letters)
Score E
Sequences producing significant alignments: (bits) Value emb|CAG89215.1| unnamed protein product [Debaryomyces hanse... 61 1e-008 ref|XP_759637.1| hypothetical protein UM03490.1 [Ustilago m... 57 3e-007 ref|XP_792053.1| PREDICTED: similar to Chloride channel pro... 57 3e-007 ref|NP_000075.1| chloride channel 5 [Homo sapiens] >gi|5720... 56 3e-007 gb|AAW43659.1| voltage-gated chloride channel, putative [Cr... 55 6e-007 gb|AAG49590.1| chloride channel CLCN5 [Cavia porcellus] 55 8e-007 ref|XP_879113.1| PREDICTED: similar to chloride channel 5 i... 55 1e-006 ref|XP_879022.1| PREDICTED: similar to Chloride channel pro... 55 1e-006 ref|XP_878924.1| PREDICTED: similar to Chloride channel pro... 55 1e-006 ref|XP_869706.1| PREDICTED: similar to Chloride channel pro... 55 1e-006 >emb|CAG89215.1| unnamed protein product [Debaryomyces hansenii CBS767] ref|XP_460866.1| unnamed protein product [Debaryomyces hansenii] Length = 760
Identities = 29/59 (49%), Positives = 44/59 (74%), Gaps = 2/59 (3%) Frame = -1
IFT+G +VP+GIF+P +A GA+ GRA G+I+ +Q+ N+ S+F+TC +N +CI PG Sbjct: 429 IFTYGCKVPAGIFVPSMATGATFGRALGMIVEKIQQSNK-ESSIFSTCPANGDKCIIPG 486 --------
gnl|ti|818418295 name:POAA-aaa69b02.b1 mate_pair:820219320 (559 letters)
Score E
Sequences producing significant alignments: (bits) Value ref|XP_635839.1| hypothetical protein DDB0188786 [Dictyoste... 86 5e-016 ref|NP_909909.1| hypothetical protein [Oryza sativa] >gi|14... 48 2e-004 gb|AAI02680.1| MGC127960 protein [Bos taurus] >gi|78369322|... 47 4e-004 ref|XP_696610.1| PREDICTED: similar to ARV1 homolog [Danio ... 46 6e-004 emb|CAG12971.1| unnamed protein product [Tetraodon nigrovir... 46 8e-004 ref|XP_546093.2| PREDICTED: similar to ARV1 homolog isoform... 44 0.003 ref|XP_857065.1| PREDICTED: similar to ARV1 homolog isoform... 44 0.003 ref|XP_214713.2| PREDICTED: similar to ARV1 homolog [Rattus... 43 0.005 dbj|BAC31293.1| unnamed protein product [Mus musculus] 41 0.025 ref|XP_419587.1| PREDICTED: similar to likely ortholog of y... 41 0.025 >ref|XP_635839.1| hypothetical protein DDB0188786 [Dictyostelium discoideum] gb|EAL62332.1| hypothetical protein DDB0188786 [Dictyostelium discoideum] Length = 246
Identities = 41/56 (73%), Positives = 49/56 (87%) Frame = -1
RY I+KYNYL+MAIILSSFGKG L+LMMIWD YPF+ G +LN+F+LSSNVVA+K Sbjct: 153 RYPIIKYNYLIMAIILSSFGKGFLVLMMIWD---YPFSFGSILNIFVLSSNVVAIK 205 --------------- gnl|ti|818418298 name:POAA-aaa69b08.b1 mate_pair:820219323 (706 letters)
Score E
Sequences producing significant alignments: (bits) Value dbj|BAD74160.1| coronin [Physarum polycephalum] 171 2e-041 gb|AAS17878.1| coronin [Acanthamoeba healyi] 99 1e-019 emb|CAA43707.1| coronin [Dictyostelium discoideum] >gi|1169... 99 2e-019 ref|XP_647343.1| coronin [Dictyostelium discoideum] >gi|604... 99 2e-019 gb|EAL41772.1| ENSANGP00000029333 [Anopheles gambiae str. P... 98 2e-019 gb|EAA04693.2| ENSANGP00000009406 [Anopheles gambiae str. P... 98 2e-019 ref|XP_653944.1| coronin, putative [Entamoeba histolytica H... 96 1e-018 emb|CAB16873.1| SPAC23C4.02 [Schizosaccharomyces pombe] >gi... 95 2e-018 emb|CAI29659.1| hypothetical protein [Pongo pygmaeus] 94 5e-018 ref|XP_508596.1| PREDICTED: similar to coronin, actin bindi... 94 5e-018 >dbj|BAD74160.1| coronin [Physarum polycephalum] Length = 449 Score = 171 bits (434), Expect = 2e-041 Identities = 81/82 (98%), Positives = 81/82 (98%) Frame = +3
IEVLCHLGNKSSRVVWLGNSKVLTVGFSKAIDREFNIWDPRNITEPIAHFNIDTSSGGIM Sbjct: 209 IEVLCHLGNKSSRVVWLGNSKVLTVGFSKAIDREFNIWDPRNITEPIAHFNIDTSSGGIM 268
PFYD DTTVLYLAGKGDGNIRY Sbjct: 269 PFYDHDTTVLYLAGKGDGNIRY 290 Score = 90.5 bits (223), Expect = 5e-017 Identities = 39/40 (97%), Positives = 40/40 (100%) Frame = +2 Query: 74 DGHTDIIHGVDWNFEGSQLATTCHDKKLRIFDPRQLPIGV 193 DGHTDIIHGVDWNFEGSQLATTCHDKKLRIFDPRQLPIG+ Sbjct: 170 DGHTDIIHGVDWNFEGSQLATTCHDKKLRIFDPRQLPIGI 209 -------------- gnl|ti|820219326 name:POAA-aaa69b16.g1 mate_pair:818418301 (325 letters)
Score E
Sequences producing significant alignments: (bits) Value ref|XP_639157.1| translation initiation factor eIF-2B alpha... 57 3e-007 ref|YP_357579.1| translation initiation factor, putative, a... 46 5e-004 ref|ZP_00826704.1| COG0182: Predicted translation initiatio... 45 0.001 ref|ZP_00833783.1| COG0182: Predicted translation initiatio... 44 0.001 ref|ZP_00821038.1| COG0182: Predicted translation initiatio... 44 0.002 emb|CAG76376.1| putative translation initiation factor EIF-... 43 0.004 ref|ZP_00827951.1| COG0182: Predicted translation initiatio... 43 0.004 ref|ZP_00795053.1| COG0182: Predicted translation initiatio... 43 0.004 ref|YP_069418.1| putative translation initiation factor EIF... 42 0.005 ref|YP_286534.1| Initiation factor 2B alpha/beta/delta [Dec... 42 0.007 >ref|XP_639157.1| translation initiation factor eIF-2B alpha subunit [Dictyostelium discoideum] gb|EAL65795.1| translation initiation factor eIF-2B alpha subunit [Dictyostelium discoideum] Length = 346
Identities = 26/38 (68%), Positives = 30/38 (78%) Frame = +3
+++GIPYT+ICDNMA LM D KI RV VGADR A NG Sbjct: 206 EREGIPYTLICDNMAACLMRDGKIQRVLVGADRIAANG 243 ---------- ir:818418314 (315 letters) Score E
Sequences producing significant alignments: (bits) Value gb|AAH70660.1| LOC431791 protein [Xenopus laevis] 53 4e-006 gb|AAH99318.1| LOC431791 protein [Xenopus laevis] 53 4e-006 ref|XP_584300.2| PREDICTED: similar to Down syndrome critic... 52 7e-006 ref|XP_416728.1| PREDICTED: similar to Down syndrome critic... 52 9e-006 ref|NP_031860.1| Down syndrome critical region protein A [M... 51 1e-005 ref|XP_340975.1| PREDICTED: similar to Dcra [Rattus norvegi... 51 1e-005 emb|CAH89624.1| hypothetical protein [Pongo pygmaeus] 50 2e-005 ref|XP_514893.1| PREDICTED: hypothetical protein XP_514893 ... 50 2e-005 ref|XP_531457.1| PREDICTED: similar to Down syndrome critic... 50 2e-005 gb|AAV38167.1| Down syndrome critical region gene 3 [synthe... 50 2e-005 >gb|AAH70660.1| LOC431791 protein [Xenopus laevis] Length = 306 Score = 52.8 bits (125), Expect = 4e-006 Identities = 25/38 (65%), Positives = 31/38 (81%) Frame = +3
+++SGVVVV +K + H GITL MEGSV LQLSAKS+G Sbjct: 29 EILSGVVVVMSKDTIQHQGITLTMEGSVNLQLSAKSVG 66 ---------- gnl|ti|820219372 name:POAA-aaa69l10.g1 mate_pair:818418346 (283 letters)
Score E
Sequences producing significant alignments: (bits) Value ref|NP_199101.1| unknown protein [Arabidopsis thaliana] >gi... 59 4e-008 ref|XP_645519.1| hypothetical protein DDB0168507 [Dictyoste... 58 9e-008 gb|ABA94690.1| expressed protein [Oryza sativa (japonica cu... 57 2e-007 ref|NP_974268.1| unknown protein [Arabidopsis thaliana] >gi... 57 3e-007 ref|XP_393684.2| PREDICTED: similar to CG8709-PA [Apis mell... 57 3e-007 emb|CAI76499.1| hypothetical protein, conserved [Theileria ... 54 2e-006 gb|EAN31812.1| hypothetical protein, conserved [Theileria p... 52 6e-006 ref|XP_787872.1| PREDICTED: similar to Lipin 2 [Strongyloce... 50 2e-005 emb|CAG10216.1| unnamed protein product [Tetraodon nigrovir... 50 3e-005 gb|AAW42851.1| Nuclear elongation and deformation protein 1... 49 5e-005 >ref|NP_199101.1| unknown protein [Arabidopsis thaliana] dbj|BAB09188.1| unnamed protein product [Arabidopsis thaliana] Length = 930 Score = 59.3 bits (142), Expect = 4e-008 Identities = 28/45 (62%), Positives = 33/45 (73%) Frame = +3
L S +REV+RR P EFKI CL+EI+ LFP H+ FYA FGNR T Sbjct: 815 LFPSLFREVIRRAPHEFKIACLEEIRGLFPPEHNPFYAGFGNRDT 859 ------------- gnl|ti|818418361 name:POAA-aaa69p06.b1 mate_pair:820219387 (219 letters)
Score E
Sequences producing significant alignments: (bits) Value ref|XP_636535.1| hypothetical protein DDB0191152 [Dictyoste... 57 3e-007 ref|XP_663650.1| hypothetical protein AN6046.2 [Aspergillus... 45 8e-004 ref|XP_328556.1| hypothetical protein [Neurospora crassa] >... 44 0.001 ref|XP_359497.1| hypothetical protein MG05280.4 [Magnaporth... 44 0.002 gb|EAL93263.1| PB1 domain protein, putative [Aspergillus fu... 44 0.002 gb|EAA72325.1| hypothetical protein FG04123.1 [Gibberella z... 44 0.002 ref|XP_797888.1| PREDICTED: similar to Neutrophil cytosol f... 43 0.004 ref|XP_781983.1| PREDICTED: similar to neutrophil cytosolic... 43 0.004 dbj|BAD60784.1| NADPH oxidase cytosolic protein p67phox sho... 41 0.015 dbj|BAD60783.1| NADPH oxidase cytosolic protein p67phox [On... 41 0.015 >ref|XP_636535.1| hypothetical protein DDB0191152 [Dictyostelium discoideum] gb|AAO72634.1| p67-like superoxide-generating NADPH oxidase [Dictyostelium discoideum] gb|AAO62420.1| p67-like superoxide-generating NADPH oxidase [Dictyostelium discoideum] gb|EAL63008.1| hypothetical protein DDB0191152 [Dictyostelium discoideum] Length = 604 Score = 56.6 bits (135), Expect = 3e-007 Identities = 24/35 (68%), Positives = 31/35 (88%) Frame = +3
LRGHE+IDY+QLG+D+KLLL E+LFNKAL + +G Sbjct: 100 LRGHEYIDYKQLGLDHKLLLAEVLFNKALALGRAG 134 ------------ gnl|ti|820218797 name:POAA-aaa70c03.g1 (899 letters) Score E
Sequences producing significant alignments: (bits) Value emb|CAA22654.1| SPCC417.08 [Schizosaccharomyces pombe] >gi|... 207 4e-052 gb|EAL86905.1| elongation factor EF-3, putative [Aspergillu... 206 1e-051 ref|XP_711404.1| translation elongation factor 3 [Candida a... 194 5e-048 ref|XP_711356.1| translation elongation factor 3 [Candida a... 194 5e-048 emb|CAA78282.1| translation elongation factor 3 [Candida al... 194 5e-048 emb|CAG89810.1| unnamed protein product [Debaryomyces hanse... 192 1e-047 emb|CAA77567.1| elongation factor 3 [Candida albicans] >gi|... 191 2e-047 gb|EAA73507.1| conserved hypothetical protein [Gibberella z... 191 3e-047 sp|P16521|EF3A_YEAST Elongation factor 3A (EF-3A) (EF-3) (T... 190 5e-047 gb|AAR92034.1| elongation factor 3 [Clavispora lusitaniae] 189 1e-046 >emb|CAA22654.1| SPCC417.08 [Schizosaccharomyces pombe] ref|NP_588285.1| hypothetical protein SPCC417.08 [Schizosaccharomyces pombe 972h-] sp|O94489|EF3_SCHPO Elongation factor 3 (EF-3) Length = 1047
Identities = 120/270 (44%), Positives = 165/270 (61%), Gaps = 6/270 (2%) Frame = -2
+K+A A+E L + S AA + P L L P + DKQ + AA Sbjct: 63 DKNATARERVLKGLEAVANHGSVAADVEPYLV-----ELLPAVIAKVADKQNAVRDAAIA 117
A +AI V TP +KA++P +L ++ W K+ SL L ++AP ++++LP+ Sbjct: 118 ASKAI--VRCTTPYAVKAIVPSVLESIHTTGKWNEKMNSLQLLDVLVEVAPSQLSYSLPQ 175
IIP +S+ MWD+K+EV+K + +T VC + N D+ FIP+L+ I P EVPETI+ L Sbjct: 176 IIPVVSESMWDTKAEVKKQSKETMTKVCTLIANADIDRFIPELINCIAHPEEVPETIHSL 235
ATTFVT V+AP+L+IM P+L RGL+E + I R+T+VIIDNM KLVEDP FLPKL Sbjct: 236 GATTFVTEVQAPTLSIMVPLLARGLNERSTPIKRKTAVIIDNMSKLVEDPQVVAPFLPKL 295
LPGL + DT DPE R+V +A TTL RV Sbjct: 296 LPGLYHIKDTIGDPECRSVVQRAITTLERV 325 -------------- gnl|ti|818417264 name:POAA-aaa71a08.g1 mate_pair:818416976 (886 letters)
Score E
Sequences producing significant alignments: (bits) Value ref|NP_961164.1| hypothetical protein MAP2230c [Mycobacteri... 122 2e-026 gb|AAK57188.1| MxaD [Stigmatella aurantiaca] 121 3e-026 ref|ZP_00105790.1| COG3321: Polyketide synthase modules and... 121 4e-026 gb|AAN60755.1| polyketide synthase [Cryptosporidium parvum] 117 7e-025 ref|XP_625875.1| cryptosporidium polyketide synthase [Crypt... 117 7e-025 gb|AAK19883.1| soraphen polyketide synthase A [Polyangium c... 116 9e-025 gb|AAA79984.2| soraphen polyketide synthase B [Polyangium c... 115 2e-024 emb|CAE45671.1| borrelidin polyketide synthase, type I [Str... 115 2e-024 ref|NP_851456.1| lankamycin synthase, modules 3 and 4 [Stre... 114 6e-024 emb|CAD19091.1| StiG protein [Stigmatella aurantiaca] 109 1e-022 >ref|NP_961164.1| hypothetical protein MAP2230c [Mycobacterium avium subsp. paratuberculosis K-10] gb|AAS04547.1| hypothetical protein MAP2230c [Mycobacterium avium subsp. paratuberculosis K-10] Length = 3679 Score = 122 bits (305), Expect = 2e-026 Identities = 65/161 (40%), Positives = 96/161 (59%) Frame = +2
Yüklə 3,49 Mb. Dostları ilə paylaş:
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