Nom du Laboratoire/Service

Références
Allain, G., P. Petitgas, and Lazure P.. 2007a. The influence of environment and spawning distribution on the survival of anchovy (Engraulis encrasicolus) larvae in the Bay of Biscay (NE Atlantic) investigated by biophysical simulations. Fisheries Oceanography 16(6): 506-514.
Allain, G., P. Petitgas, and Grellier P. 2007b. Biophysical modelling of larval drift, growth and survival for the prediction of anchovy (Engraulis encrasicolus) recruitment in the Bay of Biscay (NE Atlantic). Fisheries Oceanography 16(6): 489-505.
Amand, M., Pelletier, D., Ferraris, J., and Kulbicki, M. 2004. A step toward the definition of ecological indicators of the impact of fishing on the fish assemblage of the Abore reef reserve (New Caledonia). Aquatic Living Resources, 17: 139-149.
Battaglia, A., Trenkel, V., and Rochet, M. J. 2006. Estimating end effects in trawl catches. ICES J. Mar. Sci., 63: 956-959.
Bellier, E., B. Planque, et al. 2007. Historical fluctuations of spawning area of anchovy (Engraulis encrasicolus) and sardine (Sardina pilchardus) in the Bay of Biscay during 1967-73 end 2000-2004. Fish. Oceanogr. 16(1): 1-15.
Benoît, E., and Rochet, M.-J. 2004. A continuous model of biomass size spectra governed by predation, and the effects of fishing on them. Journal of Theoretical Biology, 226: 9-21.
Bergeron, J.-P. 2004. Contrasting years in the Gironde estuary (Bay of Biscay, NE Atlantic) springtime outflow and consequences for zooplankton pyruvate kinase activity and the nutritional condition of anchovy larvae: an early view. ICES J. Mar. Sci. 61: 928-932.
Bergeron, J.-P. 2006. Small-scale variability of zooplankton pyruvate kinase activity in the Gironde Estuary plume (Atlantic French Coast): A case study under unusually low freshwater discharge. Estuar. Coast. Shelf Sci. 69: 662-666.
Brind’Amour, A., D. Boisclair, et al. 2005. Multiscale distribution of littoral fish community in relation to environmental variables. Limnology and Oceanography 50(2): 465-479.
Buffaz, L. and B. Planque 2006. Application of operational oceanography to fisheries management: the case of anchovy in hte Bay of Biscay. ICES CM 2006/?:10.
Carpentier, A., Vaz, S., Martin, C. S., Coppin, F., Dauvin, J.-C., Desroy, N., Dewarumez, J.-M., Eastwood, P. D., Ernande, B., Harrop, S., Kemp, Z., Koubbi, P., Leader-Williams, N., Lefèbvre, A., Lemoine, M., Loots, C., Meaden, G., Ryan, N., and Walkey, M., 2005. Atlas des habitats des Ressources Marines de la Manche Orientale. Ind.
Certain, G., E. Bellier, et al. 2007. Characterising the temporal variability of the spatial distribution of animals: an application to seabirds at sea. Ecography 30: 695-708.
Claudet, J. 2006. Aires Marines protégées et récifs artificiels : méthodes d'évaluation, protocoles expérimentaux et indicateurs Thèse de Doctorat de l'Université de Perpignan et de l'Ecole Pratique des Hautes Etudes. Discipline : Océanologie, Université de Perpignan. 266 pp.

Claudet, J., and Pelletier, D. 2004. Marine protected areas and artificial reefs: A review of the interactions between management and scientific studies. Aquatic Living Resources, 17: 129-138.

Claudet, J., Pelletier, D., Jouvenel, J. Y., Bachet, F., and Galzin, R. 2006. Assessing the effects of Marine Protected Area (MPA) on a reef fish assemblage in a northwestern Mediterranean marine reserve : identifying community-based indicators. Biological Conservation, 130: 349-369.
Cotter, A. J. R., Mesnil, B., and Piet, G. J. 2007. Estimating stock parameters from trawl cpue-at-age series using year-class curves. ICES J. Mar. Sci., 64: 234-247.
Cotter, J., P. Petitgas, et al. 2007. Manual of indicators and methods for assessing fish stocks using only fishery-independent survey-based information. ICES CM 2007/O:27.
De Lara, M., Doyen, L., Guilbaud, T., and Rochet, M.-J. 2007. Is a management framework based on spawning-stock biomass indicators sustainable ? A viability approach. ICES J. Mar. Sci., 64:
Désaunay, Y., D. Guérault, et al. 2006. Changes in occurrence and abundance of northern / southern flattfishes over a 20-year period in a coastal nusery area (Bay of Vilaine) and the eastern continental shelf of the Bay of Biscay. Sci. Mar. 70(S1): 193-200.
Doyen, L., Cohen de Lara, M., Ferraris, J., and Pelletier, D. 2007. Sustainable management of marine biodiversity and ecosystems through marine protected areas. Ecological Modelling, 208: 353-366.
Drévès, L., Lampert, L., Martin, J., Abernot Le Gac, C., Brylinski, J.-M., Vincent, D., Gaffet, J. D., and Schlaich, I., 2006. Surveillance écologique et halieutique du site électronucléaire de Flamanville, année 2005. Ifremer, Plouzané, 202 pp.
Drouineau, H. 2008. Développement et ajustement d'un modèle de dynamique des populations structuré en longueur et spatialisé appliqué au stock Nord de merlu (Merluccius merluccius). Thèse de Doctorat. Spécialité Halieutique, Ecole Nationale Supérieure Agronomique de Rennes. 207 pp.
Drouineau, H., Mahévas, S., Bertignac, M., and Fertin, A. 2008. Assessing the impact of discretisation assumptions in a length-structured growth population model. Fisheries Research,
Drouineau, H., Mahévas, S., Pelletier, D., and Beliaeff, B. 2006. Assessing the impact of different management options using ISIS-Fish : the French Merluccius merluccius - Nephrops norvegicus mixed fishery of the Bay of Biscay. Aquat. Living Resour., 19: 15-29.
Ferraris, J., Pelletier, D., Kulbicki, M., and Chauvet, C. 2005. Assessing the impact of removing reserve status on the Abore Reef fish assemblage, New Caledonia. Marine Ecology Progress Series, 292: 271-286.
Gallego, A., E. North, and Petitgas P. 2007. Advances in modelling physical-biological interactions in fish early life history. Marine Ecology Progress Series 347: 121-126.
Gaertner, J. C., J. A. Bertrand, et al. 2005. Large spatial scale variation of demersal fish assemblage structure on the continental shelf of the NW Mediterranean Sea. Marine Ecology Progress Series 297: 245-257.
Gaertner, J.-C., J.-A. Bertrand, et al. 2005. Spatio-temporal organization patterns of demersal assemblages of the east coast of Corsica (Mediterranean Sea). Vie Milieu 55(2): 81-89.
Gilliers, C. 2004. Recherche d'indicateurs de la qualité des écosystèmes côtiers: application aux nourriceries côtières et estuariennes des poissons plats. Doctorat, Université du Littoral - Côte d'Opale. 194 pp.
Gilliers, C., Amara, R., Bergeron, J.-P., and Le Pape, O. 2004. Comparison of growth and condition indices of juvenile flatfish in different coastal nursery grounds. Environmental Biology of Fishes, 71: 189-198.
Gilliers, C., Le Pape, O., Désaunay, Y., Bergeron, J.-P., Schreiber, N., Guérault, D., and Amara, R. 2006. Growth and condition of juvenile sole (Solea solea L.) as indicators of habitat quality in coastal and estuarine nurseries in the Bay of Biscay with a focus on sites exposed to the Erika oil spill. Sci. Mar., 70: 183-192.
Goarant, A., Petitgas, P., and Bourriau, P. 2007. Anchovy (Engraulis encrasicolus) egg density measurements in the Bay of Biscay: evidence for the spatial variation in egg density with sea surface salinity. Mar. Biol., 151 (5) : 1907-1915.
Huret, M., Gohin, F., Delmas, D., Lunven, M., and Garçon, V. 2007. Use of Sea WiFS data for light availability and parameter estimation of a phytoplankton production model of the Bay of Biscay. Journal of Marine Systems, 65: 509-531
Huret, M., P. Petitgas, et al. 2007. Linking anchovy and sprat distributions with bio-physical oceanographic features: a Bay of Biscay - North Sea comparison. ICES CM 2007/G:14.
Huret, M., J. A. Runge, et al. 2007. Dispersal modeling of fish early life stages: sensitivity with application to Atlantic cod in the western Gulf of maine. Mar Ecol Prog Ser 347: 261-274.
Le Pape, O., Baulier, L., Cloarec, A., Martin, J., Le Loc'h, F., and Désaunay, Y. 2007a. Habitat suitability for the juvenile common sole (Solea solea, L.) in the Bay of Biscay (France): a quantitative description using indicators based on epibenthic fauna. Journal of Sea Research, 57: 126-136.
Le Pape, O., Gilliers, C., Riou, P., Morin, J., Amara, R., and Désaunay, Y. 2007b. Convergent signs of degradation in both the capacity and the quality of an essential fish habitat: state of the Seine Estuary (France) flatfish nurseries. Hydrobiologia, 588: 225-229.
Le Pape, O., Guérault, D., and Désaunay, Y. 2004. Effect of an invasive mollusc, American slipper limpet Crepidula fornicata, on habitat suitability for juvenile common sole Solea solea in the Bay of Biscay. Marine Ecology Progress Series, 277: 107-115.
Lehuta, S., Petitgas, P., and Mahevas, S. 2006. Assessing the potential effect of management scenarios for Anchovy (Engraulis encrasicolus) fishery of the Bay of Biscay using ISIS-Fish simulation tool. ICES CM 2006/R:10, 24 pp.
Lobry, J., Y. Desaunay, 2006. Les ressources bentho-démersales côtières du golfe de Gascogne. Etat comparatif des pêcheries côtières et de leur contexte environnemental entre les années 1980 et 2000. SMIDAP, Rapport d'étude: arrêté 2005 06986 du 25 juillet 2005, 81 p.
Lobry, J., M. Lepage, et al. 2006. From seasonal patterns to a reference situation in an estuarine environment: Example of the small fish and shrimp fauna of the Gironde estuary (SW France). Estuarine, Coastal and Shelf Science 70: 239-250.
Lobry J., Le Loc'h, F., and Niquil, N. 2007. Les compartiments-clé et les compartiments structurants de l’écosystème exploité du Golfe de Gascogne. Une approche par modélisation trophique. 8e forum halieumétrique "Changements réversibles et irréversibles dans les ressources et leurs usages", La Rochelle, France.
Lobry, J., David, V., Pasquaud, S., Lepage, M., Sautour, B., and Rochard, E. 2008. Diversity and stability of an estuarine trophic network. Marine Ecology Progress Series 358: 13-25
Mahévas, S., Bellanger, L., and Trenkel, V. sous presse 2007. Cluster analysis of linear model coefficients under contiguity constraints for identifying common spatial and temporal patterns. Fisheries Research,
Mahévas, S., and Pelletier, D. 2004. ISIS-Fish, a generic and spatially explicit simulation tool for evaluating the impact of management measures of fisheries dynamics. Ecological Modelling, 171: 65-84.
Mahévas, S., Sandon, Y., and Biseau, A. 2004. Quantification of annual variations in fishing power due to vessel characteristics: an application to the bottom-trawlers of South-Brittany targeting anglerfish (Lophius budegassa and Lophius piscatorius). ICES Jounal of Marine Science, 61: 71-83.
Marquis, E., P. Petitgas, et al. 2006. Influence of the small pelagic fish on the structure and functioning of the planktonic foof web on the continental shelf on the Bay of Biscay. ICES CM 2006/F:09.
Martin, J. and B. Planque 2006. Variability in the onset of hatching of spider crab (Maja brachydactyla Balss, 1922) in the English Channel in relation to sea temperature. Invertebrate Reproduction and Development 49(3): 143-150.
Massé, J., Méhault, S., Beillois, P., Duhamel, E., Planque, B., Petitgas, P., and Biseau, A., 2006a. Estimation du stock d'anchois lors de la campagne acoustique Pelgas06. ICES Working Group on the assessment of Mackerel, Horse Mackerel, Sardine and Anchovy, Galway, 5-14 September 2006, pp.
Massé, J., Trenkel, V., Kostecky, C., and Mehault, S., 2006b. An attempt to reduce species misidentification in acoustic assessments by using school descriptors, including multi-frequency indices. Maastricht, Hollande, pp.
Massé, J., Beillois, P., Duhamel, E., Huret, M., Planque, B., Petitgas, P., and Biseau, A., 2007. Direct assessment of pelagic species by the PELGAS07 acoustic survey and consort commercial vessels. Copenhagen, 30 pp.
Mesnil, B. 2003. The Catch-Survey Analysis (CSA) method of fish stock assessment: an evaluation using simulated data. Fisheries Research, 63: 193-212.
Mesnil, B. 2005. Sensitivy of, and Bias in, Catch-Survey Analysis (CSA) Estimates of Stock Abundance. Fisheries Assesment and Management in Data-Limited Situations, AK - SG:
Nicolas, D., F. Le Loc’h, et al. 2007. Relationships between benthic marcrofauna and habitat suitability for juvenile common sole (Solea solea, L.) in the Vilaine estuary (Bay of Biscay, France) nursery ground. Estuar. Coast. Mar. Sci. 73: 639-650.
Pasquaud, S., J. Lobry, et al. 2007. Facing the necessity of describing estuarine ecosystems: a review of food web ecology study techniques. Hydrobiologia 588: 159-172.
Pecquerie, L. 2007. Modélisation bioénergétique de la croissance, du développement et de la reproduction d'un petit pélagique : l'anchois du golfe de Gascogne. Ifremer/ Vreij Universiteit Amsterdam/ AgroCampus Rennes.
Pecquerie, L. 2007. Modélisation bioénergétique de la croissance, du développement et de la reproduction d'un petit pélagique : l'anchois du golfe de Gascogne. Doct. Agrocampus Rennes, mention : Halieutique, Agrocampus Rennes/Ifremer. 235 pp.
Pelletier, D., Garcia-Charton, J. A., Ferraris, J., David, G., Thébaud, O., Letourneur, Y., Claudet, J., Amand, M., Kulbicki, M., and Galzin, R. 2005. Designing indicators for assessing the effects of marine protected areas on coral reef ecosystems: A multidisciplinary standpoint. Aquat. Living Resour., 18: 15-33.
Pelletier, D., and Mahévas, S. 2005. Spatially explicit fisheries simulation models for policy evaluation. Fish and fisheries, 6: 307-349.
Persohn, C., P. Lorance, et al. 2007. Habitat preferences of selected demersal species in the Bay of Biscay and the Celtic Sea. ICES CM 2007/G :16.
Petitgas, P. 2008. Fisboat: Fisheries Independent Survey-Based Operational Assessment Tools. Final activity report. Nantes, Ifremer: 302p. + Annexes 390p.
Petitgas, P., P. Beillois, et al. 2004. On the importance of adults in maintaining population habitat occupation of recruits as deduced from observed schooling behaviour of age-0 anchovy in the bay of Biscay.
Petitgas, P. and Grellier, P. 2003. Size selective processes for anchovy in Biscay, 2000-2002: recruitment, adult survival and spawning. ICES CM 2003/N:07
Petitgas, P., Lenfant, P., Gonzalez, C., and Grellier, P., 2005. Tracking individual variability in Bay of Biscay anchovy population using genetics and otolith analysis to understand the mechanisms of population maintenance. 12 pp.
Petitgas, P., S. Magri, and Lazure P. 2006. One-dimensional biophysical modelling of fish egg vertical distributions in shelf seas. Fish. Oceanogr. 15(5): 413-428.
Petitgas, P., J. Massé, et al. 2006. Hydro-plankton characteristics and their relationship with sardine and anchovy distributions on the French shelf of the Bay of Biscay. Sci. Mar. 70(S1): 161-172.
Petitgas, P., J.-C. Poulard, et al. 2007. Comprehensive indicator-based diagnostics of fish stocks using fishery-independant survey data : the FISBOAT report on case studies. ICES CM 2007/O:16
Petitgas, P., D. Reid, et al. (2006). The entrainment hypothesis: an explanation for the persistence and innovation in spawning migration and life cycle patterns. ICES CM 2006
Poulard, J.-C., and Trenkel, V. M. 2007. Do survey design and wind conditions influence survey indices ? Can. J. Fish. Aquat. Sci. : 1551-1562.
Petitgas, P. and S. Vaz 2005. Investigating the interaction between population spatial organisation and population dynamics using an age-structured multi-site matrix model on anchovy in Biscay. ICES CM 2005/L:23.
Piet, G. J., Jansen, H. M., and Rochet, M. J. In press. Evaluation of indicators to be used in an ecosystem approach to fisheries management in European waters ICES Jounal of Marine Science,
Planque, B., Bellier, E., and Lazure, P. 2007. Modelling potential spawning habitat of sardine (Sardina pilchardus) and anchovy (Engraulis encrasicolus) in the Bay of Biscay. Fish. Oceanogr., 16: 16-30.
Planque, B., Lazure, P., and Jegou, A.-M. 2006. Typology of hydrological structures modelled and observed over the Bay of Biscay shelf. Sci. Mar., 70: 43-50.
Planque, B., P. Lazure, et al. 2004. Detecting hydrological landscapes over the Bay of Biscay continental shelf in spring. Climate Research 28: 41-52.
Poulard, J.-C. and F. Blanchard 2005. The impact of climate change on the fish community structure of the eastern continental shelf of the Bay of Biscay. ICES J. Mar. Sci. 62: 1436-1443.
Prigent, M., Fontenelle, G., Rochet, M.-J., and Trenkel, V. M. In press. Using cognitive maps to investigate fishers’ ecosystem objectives and knowledge. Ocean & Coastal Management,
Rice, J., and Rochet, M.-J. 2005. A framework for selecting a suite of indicators for fisheries management. ICES Jounal of Marine Science, 62: 516-527.
Rochet, M.-J., Bertignac, M., Fifas, S., Gaudou, O., and Talidec, A., 2006a. Estimating discards in the French Nephrops fishery in the Bay of Biscay. Ifremer, Nantes, Lorient, Brest, pp.
Rochet, M.-J., Cadiou, J.-F., and Trenkel, V. 2006b. Precision and accuracy of fish length measurements obtained with two visual underwater methods. Fishery Bulletin, 104: 1-9.
Rochet, M. J., Prigent, M., Bertrand, J. A., Carpentier, A., Coppin, F., Delpech, J.-P., Fontenelle, G., Foucher, E., Mahé, K., Rostiaux, E., and Trenkel, V. M. In press. Fishers' perceptions of recent changes in the Eastern English Channel ecosystem and fisheries are corroborated by scientific information. ICES Jounal of Marine Science,
Rochet, M.-J., and Rice, J. 2005. Do explicit criteria help selecting indicators for Ecosystem-based fisheries management ? An experimental test. ICES Journal of Marine Science, 62: 528-539.
Rochet, M. J., and Trenkel, V. M. sous presse 2007. Why and how could indicators be used in an ecosystem approach to fisheries management? In Future of Fishery Science in North America, Ed. by R. J. Beamish and B. Rothschild. Fish & Fisheries Series, Springer,
Rochet, M. J., Trenkel, V. M., Bellail, R., Coppin, F., Le Pape, O., Mahé, J.-C., Morin, A., Poulard, J.-C., Schlaich, I., Souplet, A., Vérin, Y., and Bertrand, J. A. 2005. Combining indicator trends to assess ongoing changes in exploited fish communities: diagnostic of communities off the coasts of France. ICES Journal of Marine Science, 62: 1647-1664.
Shin, Y.-J., Rochet, M.-J., Jennings, S., Field, J., and Gislason, H. 2005. Using size-based indicators to evaluate the ecosystem effects of fishing. ICES Jounal of Marine Science, 62: 384-396.
Talidec, C., Rochet, M.-J., Bertignac, M., and Macher, C., 2005. Discards estimates of nephrops and hake in the Nephrops trawl fishery of the Bay of Biscay: Methodology and preliminary results for 2003 and 2004. Lisbon, Portugal, pp.
Trenkel, V.-M. soumis 2007. A biomass random effects model (BREM) for fish stock assessment and management with application to Bay of Biscay anchovy. Canadian Journal of Fisheries and Aquatic Sciences,
Trenkel, V., Francis, R. I. C. C., Lorance, P., Mahévas, S., Rochet, M.-J., and Tracey, D. 2004a. Availability of deep-water fish to trawling and visual observation from an remotely operated vehicle (ROV). Marine Ecology Progress Series, 284: 293-303.
Trenkel, V.-M., Le Loc'h, F., and Rochet, M.-J. 2007a. Small scale spatial and temporal interactions among benthic crustaceans and one fish species in the Bay of Biscay. Mar. Biol., 151: 2207-2215.
Trenkel, V., Le Loc'h, F., and Rochet, M. J., 2006a. Interactions between Norway lobster diel activity variations and the fishing strategy of Nephrops trawlers in the Bay of Biscay 10 pp.
Trenkel, V.-M., F. Le Loc'h, et al. 2007. Small scale spatial and temporal interactions among benthic crustaceans and one fish species in the Bay of Biscay. Mar. Biol. 151: 2207-2215.
Trenkel, V.M. et Lorance, P. (2005) The contribution of visual observations to surveying the deep-sea fish community. Deep Sea 2003: Conference on the Governance and Management of Deep-sea Fisheries, Part 1: Conference reports. FAO Fisheries Proceedings 3/1, 309-322.
Trenkel, V. M., Lorance, P., and Mahévas, S. 2004b. Do visual transects provide true population density estimates for deep-water fish? ICES Journal of Marine Science, 61: 1050-1056.
Trenkel, V., Mazauric, V., and Berger, L., 2006b. First results with the new Multibeam Echo Sounder ME70. Japan, Hawaii, pp.
Trenkel, V. M., Pinnegar, J. K., Rochet, M.-J., and Rackham, B. 2004c. Different survey designs provide similar pictures of community structure but not of individual fish populations. ICES Journal of Marine Science, 61: 351-362.
Trenkel, V., Pinnegar, J., Dawson, W. A., du Buit, M.-H., and Tidd, A. N. 2005. Spatial and temporal structure of predator-prey relationships in the Celtic Sea fish community. Marine Ecology Progress Series, 299: 257-268
Trenkel, V. M., Rochet, M.-J., and Mahévas, S. 2008. Interactions between fishing strategies of Nephrops trawlers in the Bay of Biscay and Norway lobster diel activity patterns. Fisheries Management and Ecology, 15: 11-18.
Trenkel, V.-M., Rochet, M.-J., and Mesnil, B. 2007. From model-based prescriptive advice to indicator-based interactive advice. ICES J. Mar. Sci., 64: 768-774.
Trenkel, V., Scalabrin, C., Berger, L., and Mazauric, V., 2007b. Impact of beam angle on shoal structure and energy measurements: comparison of simulation results with data from new multibeam echosounder (ME70). Dublin, 17 pp.
Trenkel, V., and Skaug, H. J. 2005. Disentangling the effects of capture efficiency and population abundance on catch data using random effects models. ICES J. Mar. Sci., 62: 1543-1555.
Tufféry C. and Mahévas S., 2006. Fisheries quality management : toward quality indicators. ICES annual conference, CM 2006/M : 20, 11p.
Vigneau, J., and Mahévas, S., 2005. A new statistic for sampling design investigation: an application to length-structured landings sampling. ICES annual conference, Abeerdeen, pp.
Vigneau, J., and Mahévas, S. 2007. Detecting sampling outliers and sampling heterogeneity when catch-at-length is estimated using the ratio estimator. ICES J. Mar. Sci., 64: 1028-1032.
Woehrling, D., A. Lefebvre, et al. 2005. Seasonal and longer term trends in sea temperature along the French North Sea coast, 1975 to 2002. J. Mar. Biol. Assoc. U.K. 85(4769): 1-10.



Woillez, M., P. Petitgas, et al. 2006. Relationships between population spatial occupation and population dynamics: ICES CM 2006/0:05.

Woillez, M., J.-C. Poulard, et al. 2007. Indices for capturing spatial patterns and their evolution in time, with application to European hake (Merluccius merluccius) in the Bay of Biscay. ICES J. Mar. Sci. 64(3): 537-550.