Webmaster's Note: As Gerard says below, his Fourth Report came in two parts
Yüklə 3,49 Mb.
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Sbjct: 28 LIVNTASNCGFTPQYIELENMYQKY 52 ----------------- gnl|ti|818414502 name:POAA-aab73c02.b1 mate_pair:818414834 (903 letters)
Score E
Sequences producing significant alignments: (bits) Value emb|CAG00203.1| unnamed protein product [Tetraodon nigrovir... 65 4e-009 gb|AAL32171.1| chromosome 17 open reading frame 27 [Takifug... 63 1e-008 emb|CAG03055.1| unnamed protein product [Tetraodon nigrovir... 63 2e-008 ref|XP_692271.1| PREDICTED: similar to chromosome 17 open r... 62 2e-008 ref|XP_420083.1| PREDICTED: similar to chromosome 17 open r... 60 8e-008 ref|XP_540474.2| PREDICTED: similar to chromosome 17 open r... 58 5e-007 ref|XP_691386.1| PREDICTED: similar to chromosome 17 open r... 57 9e-007 ref|XP_511726.1| PREDICTED: similar to chromosome 17 open r... 57 1e-006 ref|XP_590465.2| PREDICTED: similar to chromosome 17 open r... 57 1e-006 ref|XP_221191.3| PREDICTED: similar to chromosome 17 open r... 57 1e-006 >emb|CAG00203.1| unnamed protein product [Tetraodon nigroviridis] Length = 2365
Identities = 36/86 (41%), Positives = 47/86 (54%), Gaps = 9/86 (10%) Frame = -3
Y LT DNILK+++I+ R GIPVIIMGETGCGKT LI LC++ K V + Sbjct: 1187 YELTTDNILKMLAIHMRFRCGIPVIIMGETGCGKTRLIKFLCELQRSGMPTVNMKLVKVH 1246
G + + + +A N YF Sbjct: 1247 GGTTSEMIYSKVREAEDMAFINKDYF 1272 --------------------- gnl|ti|818414505 name:POAA-aab73c05.b1 mate_pair:818414837 (531 letters)
Score E
Sequences producing significant alignments: (bits) Value ref|XP_787122.1| PREDICTED: similar to fibrocystin L [Stron... 54 3e-006 gb|AAO51468.1| hypothetical protein [Dictyostelium discoideum] 53 4e-006 ref|XP_644799.1| hypothetical protein DDB0214838 [Dictyoste... 53 4e-006 ref|XP_641881.1| hypothetical protein DDB0215273 [Dictyoste... 52 1e-005 ref|ZP_00766648.1| Blue (type 1) copper domain [Chloroflexu... 52 1e-005 ref|XP_642234.1| hypothetical protein DDB0204534 [Dictyoste... 51 2e-005 ref|XP_637850.1| hypothetical protein DDB0186922 [Dictyoste... 51 2e-005 ref|XP_637511.1| hypothetical protein DDB0187180 [Dictyoste... 51 2e-005 ref|XP_636711.1| hypothetical protein DDB0219347 [Dictyoste... 49 6e-005 ref|XP_697728.1| PREDICTED: similar to fibrocystin L [Danio... 49 8e-005 >ref|XP_787122.1| PREDICTED: similar to fibrocystin L [Strongylocentrotus purpuratus] Length = 4129
Identities = 20/33 (60%), Positives = 27/33 (81%) Frame = -1
TIHG +N +++HNV Y I+GH YF+EDG+ET N Sbjct: 2291 TIHGVHNLLVEHNVAYNIMGHAYFMEDGIETNN 2323 -------------- gnl|ti|818414519 name:POAA-aab73d08.b1 mate_pair:818414851 (582 letters)
Score E
Sequences producing significant alignments: (bits) Value ref|XP_762584.1| hypothetical protein UM06437.1 [Ustilago m... 58 2e-007 ref|XP_762585.1| hypothetical protein UM06438.1 [Ustilago m... 58 2e-007 ref|XP_761608.1| hypothetical protein UM05461.1 [Ustilago m... 58 2e-007 ref|XP_760555.1| hypothetical protein UM04408.1 [Ustilago m... 58 2e-007 ref|XP_760269.1| hypothetical protein UM04122.1 [Ustilago m... 58 2e-007 ref|XP_760270.1| hypothetical protein UM04123.1 [Ustilago m... 58 2e-007 ref|XP_759335.1| hypothetical protein UM03188.1 [Ustilago m... 58 2e-007 ref|XP_757540.1| hypothetical protein UM01393.1 [Ustilago m... 58 2e-007 ref|XP_762350.1| hypothetical protein UM06203.1 [Ustilago m... 58 2e-007 ref|XP_761572.1| hypothetical protein UM05425.1 [Ustilago m... 58 2e-007 >ref|XP_762584.1| hypothetical protein UM06437.1 [Ustilago maydis 521] gb|EAK87210.1| hypothetical protein UM06437.1 [Ustilago maydis 521] Length = 1553 Score = 58.2 bits (139), Expect = 2e-007 Identities = 39/107 (36%), Positives = 58/107 (54%), Gaps = 7/107 (6%) Frame = -2
+ PD N+ WIIDSGA+ HMTG+K+LF++ P+ V +A+ + V G Sbjct: 273 VSTPDDNVAPQNET----WIIDSGASRHMTGDKTLFSTYGPSPVQEVFVADNRGVPVAGM 328
G V L++ G ++ TL++VL VPGL + Q+Q G I F Sbjct: 329 GNVRLVMSNSKGSRKSITLQDVLHVPGLGNNLFSTPQVQRLGGSINF 375 ------------------- gnl|ti|818414859 name:POAA-aab73e06.g1 mate_pair:818414526 (362 letters)
Score E
Sequences producing significant alignments: (bits) Value pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Pho... 47 2e-004 emb|CAE09056.1| putative transient receptor potential chann... 46 4e-004 gb|AAO25692.1| ankyrin repeat protein E4_8 [synthetic const... 46 5e-004 ref|NP_966096.1| ankyrin repeat domain protein [Wolbachia e... 45 6e-004 gb|AAQ93810.1| ankyrin repeat protein off7 [synthetic const... 45 8e-004 gb|AAO25687.1| ankyrin repeat protein E2_5 [synthetic const... 45 0.001 gb|AAO25690.1| ankyrin repeat protein E3_19 [synthetic cons... 44 0.001 ref|XP_391938.2| PREDICTED: similar to GA11567-PA [Apis mel... 44 0.001 ref|NP_965965.1| ankyrin repeat domain protein [Wolbachia e... 44 0.002 gb|AAO25691.1| ankyrin repeat protein E4_2 [synthetic const... 44 0.002 >pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169 Score = 47.4 bits (111), Expect = 2e-004 Identities = 23/45 (51%), Positives = 29/45 (64%) Frame = -3
G +I LL+ ADV+A D +G TPLH A Y GHLE + L+KY Sbjct: 58 GHLEIIEVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKY 102 Score = 42.4 bits (98), Expect = 0.005 Identities = 22/45 (48%), Positives = 27/45 (60%) Frame = -3 Query: 282 GRTDICVCLLEKKADVHARDATGGTPLHNAGYGGHLETIMALVKY 148 G +I LL+ ADV+A D G TPLH A GHLE + L+KY Sbjct: 91 GHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKY 135 Score = 37.7 bits (86), Expect = 0.13 Identities = 21/45 (46%), Positives = 25/45 (55%) Frame = -3 Query: 282 GRTDICVCLLEKKADVHARDATGGTPLHNAGYGGHLETIMALVKY 148 G+ D L+ ADV+A D G TPLH GHLE I L+KY Sbjct: 25 GQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKY 69 ------------------ PP43_Resultat gnl|ti|818414544 name:POAA-aab73g03.b1 mate_pair:818414878 (904 letters) Score E
Sequences producing significant alignments: (bits) Value ref|XP_647623.1| hypothetical protein DDB0202244 [Dictyoste... 62 4e-008 ref|XP_640610.1| hypothetical protein DDB0204638 [Dictyoste... 41 0.050 ref|NP_702352.1| chloroquine resistance marker protein [Pla... 39 0.32 gb|AAK48418.1| chloroquine resistance marker protein [Plasm... 39 0.32 gb|EAN79239.1| hypothetical protein, conserved [Trypanosoma... 38 0.42 gb|AAK49449.1| chloroquine resistance marker protein [Plasm... 38 0.55 gb|AAK49448.1| chloroquine resistance marker protein [Plasm... 38 0.55 ref|NP_564586.1| ubiquitin-protein ligase [Arabidopsis thal... 36 2.1 >ref|XP_647623.1| hypothetical protein DDB0202244 [Dictyostelium discoideum] gb|EAL73684.1| hypothetical protein DDB0202244 [Dictyostelium discoideum] Length = 629
Identities = 25/60 (41%), Positives = 39/60 (65%) Frame = +2
N + S +VFD TL++ +R+ + P+ WK M + FFGFLLYGL+TMG++G+ + Sbjct: 536 NVVIQLSFGLVFDALTLFINERYFNYPLERAWKKMKENWLSFFGFLLYGLVTMGMIGILY 595 --------- gnl|ti|818414548 name:POAA-aab73g07.b1 mate_pair:818414882 (908 letters)
Score E
Sequences producing significant alignments: (bits) Value emb|CAJ00344.1| chloramphenicol acetyltransferase [Aeromona... 283 4e-075 ------------- gnl|ti|818414884 name:POAA-aab73g09.g1 mate_pair:818414550 (880 letters)
Score E
Sequences producing significant alignments: (bits) Value ref|XP_640488.1| E set domain-containing protein [Dictyoste... 77 6e-013 ref|XP_636073.1| putative tyrosine kinase-like protein [Dic... 71 6e-011 ref|XP_636072.1| putative tyrosine kinase-like protein [Dic... 69 2e-010 gb|AAO12857.1| pats1 [Dictyostelium discoideum] 69 3e-010 ref|XP_645923.1| putative protein tyrosine kinase [Dictyost... 69 3e-010 ref|NP_567676.1| ATP binding / protein kinase/ protein seri... 63 1e-008 ref|NP_849424.1| ATP binding / protein kinase/ protein seri... 63 1e-008 ref|XP_647094.1| putative tyrosine kinase-like protein [Dic... 61 4e-008 ref|NP_568041.1| ATP binding / amino acid binding / protein... 61 4e-008 gb|ABA95869.1| Protein kinase domain, putative [Oryza sativ... 61 4e-008 >ref|XP_640488.1| E set domain-containing protein [Dictyostelium discoideum] gb|EAL66509.1| putative tyrosine kinase-like (TKL) protein [Dictyostelium discoideum] Length = 749 Score = 77.4 bits (189), Expect = 6e-013 Identities = 34/64 (53%), Positives = 48/64 (75%), Gaps = 2/64 (3%) Frame = -1
L E +EA IM QLRHPN+ Q LG C +PP I+MEYMP GSL++++H+P+I +DWP + Sbjct: 531 LNELAQEATIMSQLRHPNICQFLGTCNNPPEILIVMEYMPLGSLYRILHDPSISLDWPRM 590
+ +A
Sbjct: 591 KSMA 594 ------------------- gnl|ti|820217757 name:POAA-aab74a08.g1 mate_pair:818412884 (845 letters)
Score E
Sequences producing significant alignments: (bits) Value gb|AAW27048.1| SJCHGC02307 protein [Schistosoma japonicum] 80 1e-013 ref|XP_513007.1| PREDICTED: hypothetical protein XP_513007 ... 80 1e-013 gb|AAH81025.1| Unknown (protein for IMAGE:6864404) [Xenopus... 76 1e-012 ref|NP_001017239.1| small nuclear ribonucleoprotein 70kDa p... 76 1e-012 emb|CAA30972.1| U1 70K [Xenopus laevis] >gi|134091|sp|P0940... 76 1e-012 emb|CAA28352.1| unnamed protein product [Homo sapiens] 76 1e-012 gb|AAI08448.1| Unknown (protein for MGC:130688) [Xenopus la... 76 1e-012 gb|AAH97714.1| Unknown (protein for IMAGE:6871460) [Xenopus... 76 1e-012 emb|CAA29964.1| hU1-70K-like protein (216 AA) [Homo sapiens] 76 1e-012 dbj|BAB27701.3| unnamed protein product [Mus musculus] >gi|... 75 2e-012 >gb|AAW27048.1| SJCHGC02307 protein [Schistosoma japonicum] Length = 305 Score = 79.7 bits (195), Expect = 1e-013 Identities = 41/76 (53%), Positives = 54/76 (71%), Gaps = 3/76 (3%) Frame = +3
MTQFLPPNLL LF PR PIP+L PI+K + PY+GV QF+ +FED S + Sbjct: 1 MTQFLPPNLLALFAPRDPIPFLPPIEKHANHRKLPYTGVAQFLGEFEDASETPAP--VRI 58
ET+++R+ERKR+E+QE Sbjct: 59 ETREERKERKRREKQE 74 ---------------- gnl|ti|818412910 name:POAA-aab74c12.b1 mate_pair:820217785 (725 letters)
Score E
Sequences producing significant alignments: (bits) Value gb|AAK38363.1| GTP cyclohydrolase I [Physarum polycephalum] 98 2e-019 gb|AAK51701.1| GTP cyclohydrolase I [Physarum polycephalum] 96 9e-019 gb|AAK38364.1| GTP cyclohydrolase I [Physarum polycephalum] 96 9e-019 emb|CAG59262.1| unnamed protein product [Candida glabrata C... 82 1e-014 emb|CAA89827.1| core region of GTP cyclohydrolase I [Euglen... 82 2e-014 gb|AAC06296.1| GTP-cyclohydrolase [Ostertagia ostertagi] >g... 81 4e-014 gb|AAN17460.1| GTP cyclohydrolase I type V [Homo sapiens] 80 5e-014 gb|AAD38866.1| GTP cyclohydrolase I [Homo sapiens] 80 5e-014 ref|NP_001019241.1| GTP cyclohydrolase 1 isoform 2 [Homo sa... 80 5e-014 ref|XP_636697.1| GTP cyclohydrolase I [Dictyostelium discoi... 80 7e-014 >gb|AAK38363.1| GTP cyclohydrolase I [Physarum polycephalum] Length = 195 Score = 98.2 bits (243), Expect = 2e-019 Identities = 52/54 (96%), Positives = 53/54 (98%) Frame = -2
YIPNGKVLGLSKLARIAEIFAR+LQVQERLTRQIALALEEAIQPLGV VVIEAR Sbjct: 133 YIPNGKVLGLSKLARIAEIFARRLQVQERLTRQIALALEEAIQPLGVAVVIEAR 186 --------------------- gnl|ti|818412912 name:POAA-aab74d02.b1 mate_pair:820217787 (907 letters)
Score E
Sequences producing significant alignments: (bits) Value gb|AAB81865.1| heat-shock cognate protein 70; Hsc70 [Dictyo... 138 2e-031 ref|XP_644822.1| heat shock cognate protein Hsc70-2 [Dictyo... 138 2e-031 ref|XP_646617.1| heat shock cognate protein Hsc70-1 [Dictyo... 132 2e-029 emb|CAA53039.1| heat shock protein (hsc70) [Dictyostelium d... 130 6e-029 ref|NP_113319.1| heat shock protein 70KD [Guillardia theta]... 125 2e-027 gb|AAD00455.1| heat shock protein 70 [Pneumocystis carinii ... 125 2e-027 gb|AAD09565.1| heat shock protein 70 [Pneumocystis carinii] 125 2e-027 ref|NP_173055.1| HSP70B; ATP binding [Arabidopsis thaliana]... 122 2e-026 gb|AAS57912.1| 70 kDa heat shock cognate protein 1 [Vigna r... 120 9e-026 gb|AAB42159.1| Hsc70 120 9e-026 >gb|AAB81865.1| heat-shock cognate protein 70; Hsc70 [Dictyostelium discoideum] Length = 632 Score = 138 bits (348), Expect = 2e-031 Identities = 78/157 (49%), Positives = 94/157 (59%) Frame = +1
+FSDPV Q DMKHWPFKVIAKEGDKPH++V FKGE K FSPEE+S+MVL+KMKETAEA+L Sbjct: 75 KFSDPVIQSDMKHWPFKVIAKEGDKPHLQVEFKGEVKTFSPEEVSSMVLLKMKETAEAYL 134
G T+ NAVIT PAYFNDSQRQA +D Sbjct: 135 GKTINNAVIT---------------------------------VPAYFNDSQRQATKDAG 161
I+ NV + + +AA AYG K +G + +F Sbjct: 162 AIAKLNVQRI-INEPTAAAIAYGLEKKSQGERNILIF 197
Identities = 41/48 (85%), Positives = 45/48 (93%) Frame = +3
ANDQGNRTTPSYVAF + ERLIGDAAKNQVA+NP NT+FDAKRLIGR+ Sbjct: 28 ANDQGNRTTPSYVAFNETERLIGDAAKNQVAMNPTNTIFDAKRLIGRK 75 Score = 52.8 bits (125), Expect = 2e-005 Identities = 23/24 (95%), Positives = 24/24 (100%) Frame = +2 Query: 74 AIGIDLGTTYSCVGVWQNDRVEII 145 +IGIDLGTTYSCVGVWQNDRVEII Sbjct: 4 SIGIDLGTTYSCVGVWQNDRVEII 27 ---------------- gnl|ti|820217792 name:POAA-aab74d07.g1 mate_pair:818412917 (597 letters)
Score E
Sequences producing significant alignments: (bits) Value ref|NP_974802.1| unknown protein [Arabidopsis thaliana] 74 2e-012 ref|NP_850845.1| unknown protein [Arabidopsis thaliana] 74 2e-012 gb|AAM53304.1| putative protein [Arabidopsis thaliana] 74 4e-012 ref|NP_197343.1| unknown protein [Arabidopsis thaliana] 74 4e-012 gb|ABA92316.1| hypothetical protein LOC_Os11g13700 [Oryza s... 71 3e-011 ref|XP_582695.1| PREDICTED: similar to Protein C2orf29, par... 71 3e-011 ref|XP_515660.1| PREDICTED: similar to C2orf29 protein [Pan... 71 3e-011 ref|NP_060016.2| hypothetical protein LOC55571 [Homo sapien... 71 3e-011 ref|XP_798908.1| PREDICTED: similar to CG13567-PB, isoform ... 71 3e-011 ref|XP_343561.2| PREDICTED: similar to DNA segment, Chr 1, ... 71 3e-011 >ref|NP_974802.1| unknown protein [Arabidopsis thaliana] Length = 439 Score = 74.3 bits (181), Expect = 2e-012 Identities = 39/54 (72%), Positives = 41/54 (75%) Frame = +2
+ QDKYMQNRLVRLVCVFLQSLIRNKIINVKDLFIEVQ F + LF Sbjct: 378 KQQDKYMQNRLVRLVCVFLQSLIRNKIINVKDLFIEVQAFCIEFSRVREAAGLF 431 ----------------------------- gnl|ti|818412945 name:POAA-aab74g03.b1 mate_pair:820217823 (917 letters)
Score E
Sequences producing significant alignments: (bits) Value ref|NP_001030273.1| thioredoxin-like [Bos taurus] >gi|61554... 77 1e-012 emb|CAC40691.1| thioredoxin-like 3 [Homo sapiens] >gi|13528... 75 3e-012 emb|CAA09375.1| thioredoxin-like protein [Homo sapiens] >gi... 75 3e-012 ref|NP_116003.2| thioredoxin-like 2 [Rattus norvegicus] >gi... 75 4e-012 ref|NP_075629.2| thioredoxin-like 2 [Mus musculus] >gi|2327... 75 4e-012 gb|AAH84367.1| LOC495269 protein [Xenopus laevis] 74 5e-012 ref|NP_001017209.1| thioredoxin-like 2 [Xenopus tropicalis] 74 7e-012 gb|AAH87486.1| LOC496161 protein [Xenopus laevis] 74 9e-012 gb|AAF28841.1| PKCq-interacting protein PICOT [Homo sapiens] 73 1e-011 emb|CAB56513.1| putative thioredoxin-like protein [Mortiere... 70 8e-011 >ref|NP_001030273.1| thioredoxin-like [Bos taurus] gb|AAX46537.1| thioredoxin-like [Bos taurus] Length = 334 Score = 76.6 bits (187), Expect = 1e-012 Identities = 37/90 (41%), Positives = 56/90 (62%), Gaps = 5/90 (5%) Frame = +1
G + +V + S GQ ++L + V++FWA W+ QC Q NDV +LA+++ V Sbjct: 4 GAAEAAAAVVEVGSSGQFEELLRLRAKSLLVVHFWAPWAPQCAQMNDVMAELAKEHQQVS 63
F ++EAE VP+V+EKY + SVP F+F K S Sbjct: 64 FVKLEAEAVPEVSEKYEISSVPTFLFFKNS 93 -------------------------- gnl|ti|818412953 name:POAA-aab74g11.b1 mate_pair:820217831 (904 letters)
Score E
Sequences producing significant alignments: (bits) Value ref|ZP_00110106.1| COG3321: Polyketide synthase modules and... 83 1e-014 gb|AAF62883.1| epoD [Polyangium cellulosum] 77 6e-013 gb|AAF26921.1| polyketide synthase [Polyangium cellulosum] 76 2e-012 ref|ZP_00105790.1| COG3321: Polyketide synthase modules and... 75 2e-012 ref|ZP_00316393.1| COG3321: Polyketide synthase modules and... 75 3e-012 gb|AAF19814.1| MtaF [Stigmatella aurantiaca] 74 5e-012 gb|AAW03329.1| CtaF [Cystobacter fuscus] 73 1e-011 emb|CAD89777.1| MelF protein [Melittangium lichenicola] 73 1e-011 emb|CAD19087.1| StiC protein [Stigmatella aurantiaca] 73 2e-011 gb|AAT70104.1| CurI [Lyngbya majuscula] 72 2e-011 >ref|ZP_00110106.1| COG3321: Polyketide synthase modules and related proteins [Nostoc punctiforme PCC 73102] Length = 2016 Score = 82.8 bits (203), Expect = 1e-014 Identities = 32/60 (53%), Positives = 42/60 (70%) Frame = -1
IA+VG+GC+FPGG+ +W+ + GVD + E+PKERWD + YD DPSKPGK N G Sbjct: 35 IAIVGLGCRFPGGVDSPEAYWELLRNGVDAITEVPKERWDVDAYYDPDPSKPGKINTRNG 94
gnl|ti|820217831 name:POAA-aab74g11.g1 mate_pair:818412953 (833 letters) Score E
Sequences producing significant alignments: (bits) Value emb|CAB99155.1| putative halogenase [Streptomyces coelicolo... 54 8e-006 gb|AAD46363.1| PrnC [Burkholderia cepacia] 53 1e-005 gb|AAB97506.1| halogenase PrnC [Pseudomonas fluorescens] 53 1e-005 dbj|BAD38872.1| putative halogenase [Streptomyces carzinost... 52 2e-005 ref|ZP_00689221.1| halogenase PrnC [Burkholderia ambifaria ... 52 2e-005 gb|ABB05757.1| FAD dependent oxidoreductase [Burkholderia s... 51 4e-005 ref|ZP_00570831.1| putative halogenase [Frankia sp. EAN1pec... 51 4e-005 gb|AAY53883.1| pyrrolnitrin biosynthetic protein PrnC [Pseu... 51 5e-005 gb|AAD46372.1| PrnC [Burkholderia pyrrocinia] 51 5e-005 ref|YP_260708.1| halogenase PrnC [Pseudomonas fluorescens P... 51 5e-005 >emb|CAB99155.1| putative halogenase [Streptomyces coelicolor A3(2)] ref|NP_625562.1| putative halogenase [Streptomyces coelicolor A3(2)] Length = 585 Score = 53.5 bits (127), Expect = 8e-006 Identities = 22/43 (51%), Positives = 28/43 (65%), Gaps = 6/43 (13%) Frame = -2
F GT+HH F GGW W IPFDN + S+G+ LD+DQ+P Sbjct: 231 FSQGTLHHMFPGGWFWVIPFDNQSTSTNQLCSVGINLDLDQHP 273 ----------- gnl|ti|818413050 name:POAA-aab75a05.b1 mate_pair:820217940 (909 letters)
Score E
Sequences producing significant alignments: (bits) Value ref|XP_629242.1| hypothetical protein DDB0191828 [Dictyoste... 202 1e-050 ref|NP_179370.2| unknown protein [Arabidopsis thaliana] >gi... 189 1e-046 pir||E84556 probable vacuolar sorting-associated protein [i... 189 1e-046 pir||T08858 vacuolar protein-sorting protein homolog A_TM01... 189 1e-046 emb|CAB62653.1| vacuolar sorting protein 35 homolog [Arabid... 178 2e-043 ref|NP_190699.2| unknown protein [Arabidopsis thaliana] 178 2e-043 ref|NP_177713.2| unknown protein [Arabidopsis thaliana] 177 5e-043 gb|AAF26771.2| T4O12.9 [Arabidopsis thaliana] 176 8e-043 gb|AAH75144.1| Vps35-prov protein [Xenopus laevis] 176 1e-042 ref|XP_392327.2| PREDICTED: similar to hypothetical protein... 176 1e-042 >ref|XP_629242.1| hypothetical protein DDB0191828 [Dictyostelium discoideum AX4] gb|EAL60808.1| hypothetical protein DDB0191828 [Dictyostelium discoideum] Length = 781 Score = 202 bits (515), Expect = 1e-050 Identities = 105/170 (61%), Positives = 121/170 (71%) Frame = +2
DVL+DL+EMCRGVQHPTRGLFLR YLSE+ KDKLPD+ S G V DS+DFI+ NFTE Sbjct: 134 DVLKDLIEMCRGVQHPTRGLFLRHYLSEVTKDKLPDIDSSVENGTVMDSIDFIIQNFTET 193
NKLWVRMQHQ P +D+ERRENERLE LR+L Sbjct: 194 NKLWVRMQHQAPTKDRERRENERLE-------------------------------LRLL 222
VGKNLSR++QL+GVD Y+ VLP+V+EQII+CKDKIAQQYLMEILIQV Sbjct: 223 VGKNLSRLAQLDGVDQKTYSEVVLPKVVEQIINCKDKIAQQYLMEILIQV 272 Score = 56.6 bits (135), Expect = 1e-006 Identities = 35/87 (40%), Positives = 40/87 (45%) Frame = +3 Query: 639 VFPDEFHLVTLEQILAACGQLQPGILTSLSYPLLLLFSPLAPILIKMKNRSRRKDIIVSL 818 VFPDEFHL TL+ IL C QLQ G+ K II SL Sbjct: 272 VFPDEFHLATLDIILQTCAQLQSGVDV--------------------------KTIIASL 305
IDRLA FA ++ D P IFD F + Sbjct: 306 IDRLANFATRNADLVPDNIKIFDIFFN 332 ----------------- gnl|ti|820217940 name:POAA-aab75a05.g1 mate_pair:818413050 (890 letters)
Score E
Sequences producing significant alignments: (bits) Value ref|XP_629242.1| hypothetical protein DDB0191828 [Dictyoste... 94 8e-018 emb|CAE49237.1| novel protein simlar to human and mouse vac... 79 2e-013 emb|CAG31542.1| hypothetical protein [Gallus gallus] >gi|57... 73 1e-011 Yüklə 3,49 Mb. Dostları ilə paylaş:
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