Webmaster's Note: As Gerard says below, his Fourth Report came in two parts
Yüklə 3,49 Mb.
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+Q G D PVI Sbjct: 370 SQ---GRDRPVI 378 --------
gnl|ti|818409987 name:POAA-aab48b01.b1 mate_pair:818410310 (906 letters)
Score E
Sequences producing significant alignments: (bits) Value ref|ZP_00711403.1| COG2818: 3-methyladenine DNA glycosylase... 86 1e-015 ref|YP_152612.1| 3-methyladenine DNA glycosylase I, constit... 86 2e-015 ref|YP_218561.1| 3-methyl-adenine DNA glycosylase I, consti... 86 2e-015 ref|NP_807495.1| 3-methyladenine DNA glycosylase I [Salmone... 86 2e-015 gb|AAL22502.1| constitutive 3-methyl-adenine DNA glycosylas... 86 2e-015 ref|ZP_00731429.1| COG2818: 3-methyladenine DNA glycosylase... 86 2e-015 ref|NP_927654.1| DNA-3-methyladenine glycosylase I (3-methy... 85 3e-015 pdb|1P7M|A Chain A, Solution Structure And Base Perturbatio... 85 3e-015 gb|ABB68033.1| 3-methyl-adenine DNA glycosylase I, constitu... 85 3e-015 emb|CAG73002.1| DNA-3-methyladenine glycosylase I [Erwinia ... 82 2e-014 >ref|ZP_00711403.1| COG2818: 3-methyladenine DNA glycosylase [Escherichia coli B171] Length = 187 Score = 86.3 bits (212), Expect = 1e-015 Identities = 42/74 (56%), Positives = 54/74 (72%), Gaps = 3/74 (4%) Frame = -2
++NGE FA FVW FV ++ + A T + + + T SD++SK L +RGFKFVG+TICYSF Sbjct: 106 EQNGEPFADFVWSFVNNQPQVTQATTLSEIPTSTSASDALSKALKKRGFKFVGTTICYSF 165
MQACGLVNDH C Sbjct: 166 MQACGLVNDHVVGC 179 ---------- gnl|ti|818410014 name:POAA-aab48d09.b1 mate_pair:818410338 (888 letters)
Score E
Sequences producing significant alignments: (bits) Value gb|AAG41774.1| Cat [Promoter probe vector pPR9TT] 461 e-128 gb|ABB17069.1| chloramphenicol acetyl transferase [Moss gen... 450 e-120 ---------- gnl|ti|818410338 name:POAA-aab48d09.g1 mate_pair:818410014 (898 letters)
Score E
Sequences producing significant alignments: (bits) Value sp|P03851|YPB3_ECOLI Hypothetical 9.4 kDa protein 179 2e-043 pir||JQ1541 hypothetical 16.9K protein - Salmonella typhimu... 168 2e-040 ref|NP_995570.1| hypothetical protein pPCP04 [Yersinia pest... 160 7e-038 gb|AAR02632.1| conserved hypothetical protein [Salmonella t... 142 2e-032 ref|NP_758764.1| hypothetical protein pEA28_01 [Erwinia amy... 137 4e-031 gb|AAB59125.1| 13.8 kd ORF [Plasmid ColE1] >gi|9507258|ref|... 137 4e-031 ref|YP_355421.1| hypothetical protein pCollet_06 [Escherich... 133 1e-029 gb|AAB59124.1| 10.2 kd ORF [Plasmid ColE1] >gi|9507257|ref|... 122 1e-026 sp|P03845|YPA1_ECOLI Hypothetical protein 1 86 1e-015 ref|ZP_00374729.1| conserved hypothetical protein [Wolbachi... 81 6e-014 >sp|P03851|YPB3_ECOLI Hypothetical 9.4 kDa protein Length = 84
Identities = 83/84 (98%), Positives = 84/84 (100%) Frame = -1
+HEPPVQPDRCALSGNYRLESNPVRHDLSPLAAATGNRISRARYVGGATEFLKWWPNYGY Sbjct: 1 MHEPPVQPDRCALSGNYRLESNPVRHDLSPLAAATGNRISRARYVGGATEFLKWWPNYGY 60
TRRTVFGICALLKPVTFGKRVGSS Sbjct: 61 TRRTVFGICALLKPVTFGKRVGSS 84 ----------- gnl|ti|818410343 name:POAA-aab48e03.g1 mate_pair:818410019 (914 letters)
Score E
Sequences producing significant alignments: (bits) Value ref|XP_550513.1| putative GAMYB-binding protein [Oryza sati... 50 1e-004 ref|NP_910326.1| serine/threonine-protein kinase Mak (male ... 50 1e-004 ref|XP_582713.2| PREDICTED: similar to intestinal cell kina... 49 2e-004 ref|XP_538964.2| PREDICTED: similar to intestinal cell kina... 49 2e-004 emb|CAB78913.1| kinase-like protein [Arabidopsis thaliana] ... 49 2e-004 ref|NP_567574.1| ATP binding / kinase/ protein kinase/ prot... 49 2e-004 emb|CAF94418.1| unnamed protein product [Tetraodon nigrovir... 49 2e-004 ref|NP_849407.1| ATP binding / kinase/ protein kinase/ prot... 49 2e-004 gb|AAO25540.1| GAMYB-binding protein [Hordeum vulgare subsp... 49 3e-004 ref|XP_418948.1| PREDICTED: similar to male germ cell-assoc... 47 0.001 >ref|XP_550513.1| putative GAMYB-binding protein [Oryza sativa (japonica cultivar-group)] dbj|BAD67913.1| putative GAMYB-binding protein [Oryza sativa (japonica cultivar-group)] Length = 484 Score = 50.1 bits (118), Expect = 1e-004 Identities = 22/32 (68%), Positives = 24/32 (75%) Frame = -1
VAIKKMKKK+YSWEEC+ LREVK PN Sbjct: 30 VAIKKMKKKYYSWEECINLREVKSLRRMNHPN 61
Identities = 22/30 (73%), Positives = 26/30 (86%) Frame = -3
M RYKI K++GDGT+GSV +AINK SGEVV Sbjct: 1 MERYKIIKEVGDGTFGSVWRAINKESGEVV 30 ------------ gnl|ti|818410367 name:POAA-aab48g06.g1 mate_pair:818410042 (898 letters)
Score E
Sequences producing significant alignments: (bits) Value ref|XP_325403.1| hypothetical protein [Neurospora crassa] >... 52 4e-005 ref|XP_501538.1| hypothetical protein [Yarrowia lipolytica]... 50 8e-005 ref|ZP_00601539.1| Phospho-2-dehydro-3-deoxyheptonate aldol... 50 1e-004 emb|CAG84484.1| unnamed protein product [Debaryomyces hanse... 50 1e-004 ref|XP_710738.1| tyrosine-sensitive DAHP synthase [Candida ... 50 1e-004 gb|EAL87063.1| phospho-2-dehydro-3-deoxyheptonate aldolase ... 49 2e-004 ref|YP_348798.1| Phospho-2-dehydro-3-deoxyheptonate aldolas... 49 2e-004 gb|EAL19008.1| hypothetical protein CNBI0210 [Cryptococcus ... 49 2e-004 gb|AAW46670.1| phospho-2-dehydro-3-deoxyheptonate aldolase,... 49 2e-004 ref|XP_501119.1| hypothetical protein [Yarrowia lipolytica]... 49 2e-004 >ref|XP_325403.1| hypothetical protein [Neurospora crassa] gb|EAA31274.1| hypothetical protein [Neurospora crassa] Length = 379 Score = 51.6 bits (122), Expect = 4e-005 Identities = 26/47 (55%), Positives = 33/47 (70%) Frame = +3
I S + T++ + F + AIGARTTESQ+HRELASG+S VGFK Sbjct: 146 IASEMLDTISPQFLADFISVGAIGARTTESQLHRELASGLSFPVGFK 192 ---------------- gnl|ti|818410369 name:POAA-aab48g08.g1 mate_pair:818410044 (906 letters)
Score E
Sequences producing significant alignments: (bits) Value gb|AAK13589.1| rRNA intron-encoded homing endonuclease [Ory... 52 4e-005 ref|XP_525925.1| PREDICTED: similar to rRNA intron-encoded ... 50 1e-004 emb|CAH00949.1| unnamed protein product [Kluyveromyces lact... 49 2e-004 ref|XP_523367.1| PREDICTED: similar to rRNA intron-encoded ... 49 2e-004 gb|EAA16552.1| hypothetical protein [Plasmodium yoelii yoelii] 45 0.003 gb|EAA21331.1| hypothetical protein [Plasmodium yoelii yoelii] 40 0.086 gb|EAA18701.1| hypothetical protein [Plasmodium yoelii yoelii] 40 0.11 gb|EAA17111.1| hypothetical protein [Plasmodium yoelii yoelii] 40 0.11 gb|AAN36071.1| hypothetical protein PF11_0493 [Plasmodium f... 37 1.2 dbj|BAD90390.1| mFLJ00348 protein [Mus musculus] 36 1.6 >gb|AAK13589.1| rRNA intron-encoded homing endonuclease [Oryza sativa] Length = 66
Identities = 24/35 (68%), Positives = 28/35 (80%) Frame = -1
V+ TP P+ +S+GSGGSMVARLKLKGIDGRA Sbjct: 24 VAYRTPPAPYEKSKSLGSGGSMVARLKLKGIDGRA 58 Score = 35.4 bits (80), Expect = 2.8 Identities = 28/66 (42%), Positives = 35/66 (53%), Gaps = 4/66 (6%) Frame = -3 Query: 259 RRSDTVVVLTINDADQG*DSVHLDSFRT----LEKSRVYGFWGEYGRKAET*RN*RKGTQ 92 RRSDTV+V TINDADQG V ++RT EKS+ G G + + + Sbjct: 4 RRSDTVLVSTINDADQGSADV---AYRTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPP 60
VEPAA
Sbjct: 61 GVEPAA 66 -------
gnl|ti|818410380 name:POAA-aab48h10.g1 mate_pair:818410057 (899 letters)
Score E
Sequences producing significant alignments: (bits) Value gb|AAC97378.1| TcSTI1 [Trypanosoma cruzi] 70 1e-010 gb|EAN97552.1| stress-induced protein sti1, putative [Trypa... 70 1e-010 ref|NP_172691.1| unknown protein [Arabidopsis thaliana] >gi... 67 6e-010 gb|AAB49720.1| transformation-sensitive protein homolog [Ac... 67 6e-010 gb|AAH85642.1| Stress-induced-phosphoprotein 1 (Hsp70/Hsp90... 66 2e-009 gb|AAB37318.1| protein antigen LmSTI1 [Leishmania major] 66 2e-009 emb|CAJ02290.1| stress-induced protein sti1 [Leishmania major] 66 2e-009 gb|AAZ38904.1| heat shock protein 60 [Pseudosciaena crocea] 66 2e-009 gb|AAY88229.1| stress-induced protein 1 [Leishmania donovani] 66 2e-009 emb|CAG00408.1| unnamed protein product [Tetraodon nigrovir... 65 2e-009 >gb|AAC97378.1| TcSTI1 [Trypanosoma cruzi] Length = 565
Identities = 29/43 (67%), Positives = 37/43 (86%) Frame = +3
+DP +ALQ+KE+GN FFK +FPEA++AYTEAIKRNP +HT Y Sbjct: 362 LDPEIALQKKEEGNTFFKSDKFPEAVEAYTEAIKRNPDEHTTY 404 Score = 41.2 bits (95), Expect = 0.049 Identities = 24/68 (35%), Positives = 36/68 (52%) Frame = +1 Query: 16 RRNSYDHLEQLKLQCGGISRIGNCYAKQDKYAEAIAAYNKSLTEHRTPDVLTSLQKMEKL 195 R N D+ KL ++R C + ++ EAIA + K+L EHR PD L L EK Sbjct: 297 RENRCDYTVLAKL----MTREALCLQRLKRFDEAIALFKKALVEHRNPDTLAKLTACEKE 352
K++ + +A
Sbjct: 353 KEKFEIEA 360 --------------- gnl|ti|818409904 name:POAA-aab49a03.b1 mate_pair:818410223 (483 letters)
Score E
Sequences producing significant alignments: (bits) Value emb|CAJ00344.1| chloramphenicol acetyltransferase [Aeromona... 254 1e-06 ------------
L'autre avec gËne droso gnl|ti|818410223 name:POAA-aab49a03.g1 mate_pair:818409904 (325 letters)
Score E
Sequences producing significant alignments: (bits) Value gb|AAB59124.1| 10.2 kd ORF [Plasmid ColE1] >gi|9507257|ref|... 83 3e-015 ref|ZP_00374729.1| conserved hypothetical protein [Wolbachi... 65 1e-009 pir||A53577 ascites sialoglycoprotein 1 - rat (fragments) 47 2e-004 gb|AAA85523.1| Heterodimeric complex composed of a mucin su... 47 2e-004 sp|P03851|YPB3_ECOLI Hypothetical 9.4 kDa protein 41 0.011 ref|XP_516142.1| PREDICTED: similar to hypothetical protein... 32 9.1 >gb|AAB59124.1| 10.2 kd ORF [Plasmid ColE1] ref|NP_040359.1| hypothetical protein pColE1_04 [Plasmid ColE1] Length = 96 Score = 83.2 bits (204), Expect = 3e-015 Identities = 41/48 (85%), Positives = 43/48 (89%) Frame = +3
RSFFSARNLLLAN KTTAT+GGLFA SRATNSFS+G WL SADTKYC Sbjct: 2 RSFFSARNLLLANKKTTATNGGLFAGSRATNSFSEGNWLQQSADTKYC 49 >ref|ZP_00374729.1| conserved hypothetical protein [Wolbachia endosymbiont of Drosophila ananassae] gb|EAL57752.1| conserved hypothetical protein [Wolbachia endosymbiont of Drosophila ananassae] Length = 63 Score = 64.7 bits (156), Expect = 1e-009 Identities = 35/38 (92%), Positives = 35/38 (92%) Frame = -1
EKELVALD ANKPPLVAVVF FASSRLRAEKKDL KIL EKELVALD ANKPPLVAVVF FASSRLRAEKKDL KIL Sbjct: 26 EKELVALDPANKPPLVAVVFLFASSRLRAEKKDLKKIL 63 ------- gnl|ti|818409911 name:POAA-aab49a11.b1 mate_pair:818410231 (606 letters) Score E
Sequences producing significant alignments: (bits) Value ref|XP_636947.1| hypothetical protein DDB0187745 [Dictyoste... 51 3e-005 ref|XP_859346.1| PREDICTED: similar to RAF proto-oncogene s... 48 2e-004 dbj|BAC31550.1| unnamed protein product [Mus musculus] 44 0.003 gb|EAA19757.1| hypothetical protein [Plasmodium yoelii yoelii] 41 0.023 gb|EAA17525.1| AT hook motif, putative [Plasmodium yoelii y... 41 0.023 ref|XP_636087.1| hypothetical protein DDB0188550 [Dictyoste... 41 0.030 emb|CAB06722.1| very large tegument protein [Human herpesvi... 40 0.052 ref|NP_188851.2| CWLP (CELL WALL-PLASMA MEMBRANE LINKER PRO... 40 0.068 gb|AAD11796.1| cell wall-plasma membrane linker protein hom... 40 0.068 ref|XP_642159.1| hypothetical protein DDB0204455 [Dictyoste... 39 0.089 >ref|XP_636947.1| hypothetical protein DDB0187745 [Dictyostelium discoideum] gb|EAL63441.1| hypothetical protein DDB0187745 [Dictyostelium discoideum] Length = 2209 Score = 50.8 bits (120), Expect = 3e-005 Identities = 27/74 (36%), Positives = 37/74 (50%) Frame = -3
+++ +L V KW PLC SD+FSGWQ+ DPNK HNKEV +AT Sbjct: 553 IFYNLLRPEFVSKWKVPLC----------------SDSFSGWQRNDPNKLTHNKEVIEAT 596
+L + A +
Sbjct: 597 EYLVNDLVKQCAAR 610 ----------- gnl|ti|818409924 name:POAA-aab49c04.b1 mate_pair:818410244 (906 letters)
Score E
Sequences producing significant alignments: (bits) Value ref|XP_647005.1| putative protein tyrosine kinase [Dictyost... 61 5e-008 ref|XP_636808.1| putative protein tyrosine kinase [Dictyost... 60 1e-007 gb|AAO83650.1| putative protein Roco5 [Dictyostelium discoi... 57 7e-007 ref|XP_644816.1| putative protein tyrosine kinase [Dictyost... 57 1e-006 gb|AAO12857.1| pats1 [Dictyostelium discoideum] 56 2e-006 ref|XP_645923.1| putative protein tyrosine kinase [Dictyost... 56 2e-006 gb|AAO83651.1| putative protein Roco6 [Dictyostelium discoi... 50 8e-005 ref|XP_641642.1| putative protein tyrosine kinase [Dictyost... 50 8e-005 ref|XP_635392.1| cyclic GMP-binding protein [Dictyostelium ... 40 0.11 gb|AAM05694.1| hypothetical protein [Methanosarcina acetivo... 35 4.7 >ref|XP_647005.1| putative protein tyrosine kinase [Dictyostelium discoideum] gb|AAO83656.1| putative protein Roco11 [Dictyostelium discoideum] gb|EAL72907.1| putative protein serine/threonine kinase [Dictyostelium discoideum] Length = 1487
Identities = 33/91 (36%), Positives = 54/91 (59%) Frame = +2
+ +E++ G T++LHN+ GI+L +++LVV++PQ+L DVM Sbjct: 697 LAQEEIQGATEFLHNM------------GIILHY------DTPILRSLVVLDPQWLADVM 738
+++ T H ++KNGILNHS+L IW +YD Sbjct: 739 SSLITFSHNWIKNGILNHSELVSIW-SGKYD 768 --------- gnl|ti|818410253 name:POAA-aab49d03.g1 mate_pair:818409932 (901 letters)
Score E
Sequences producing significant alignments: (bits) Value ref|ZP_00308064.1| COG0015: Adenylosuccinate lyase [Cytopha... 128 3e-028 ref|XP_636767.1| adenylosuccinate lyase [Dictyostelium disc... 127 5e-028 emb|CAH09472.1| putative adenylosuccinate lyase [Bacteroide... 122 2e-026 emb|CAC22697.1| adenylosuccinate lyase [Leishmania major] >... 119 1e-025 gb|AAO78976.1| adenylosuccinate lyase [Bacteroides thetaiot... 119 2e-025 gb|AAW75302.1| adenylosuccinate lyase [Xanthomonas oryzae p... 107 6e-022 ref|XP_811726.1| adenylosuccinate lyase [Trypanosoma cruzi]... 107 6e-022 ref|XP_806850.1| adenylosuccinate lyase [Trypanosoma cruzi]... 107 6e-022 ref|YP_200687.2| adenylosuccinate lyase [Xanthomonas oryzae... 107 6e-022 ref|YP_363313.1| adenylosuccinate lyase [Xanthomonas campes... 107 6e-022 >ref|ZP_00308064.1| COG0015: Adenylosuccinate lyase [Cytophaga hutchinsonii] Length = 456
Identities = 65/118 (55%), Positives = 79/118 (66%) Frame = +1
FVN LGL+R Q+TTQIEHYDNLAAL D +KRI+TIL+D +D+W Y Sbjct: 238 FVNTTLGLSRNQYTTQIEHYDNLAALFDTLKRISTILIDFDRDVWQY------------- 284
+S+ YF QK++K+EVGSSAMPHKVNPIDFEN+EGNLG+A A FE Sbjct: 285 --------------VSMNYFKQKVKKDEVGSSAMPHKVNPIDFENSEGNLGVAIALFE 328 ------------- gnl|ti|818409952 name:POAA-aab49f04.b1 mate_pair:818410271 (910 letters)
Score E
Sequences producing significant alignments: (bits) Value ref|XP_331916.1| hypothetical protein [Neurospora crassa] >... 59 3e-007 ref|XP_641986.1| hypothetical protein DDB0206216 [Dictyoste... 58 4e-007 ref|XP_360346.1| hypothetical protein MG05720.4 [Magnaporth... 58 5e-007 gb|AAQ04633.1| cell cycle regulator protein Clf1 [Paracocci... 57 7e-007 ref|XP_783739.1| PREDICTED: similar to crooked neck-like 1 ... 57 9e-007 gb|EAL90348.1| cell cycle control protein (Cwf4), putative ... 57 1e-006 ref|XP_658863.1| hypothetical protein AN1259.2 [Aspergillus... 55 3e-006 ref|NP_957240.1| hypothetical protein LOC393920 [Danio reri... 54 1e-005 emb|CAG01466.1| unnamed protein product [Tetraodon nigrovir... 54 1e-005 ref|XP_419315.1| PREDICTED: similar to crooked neck protein... 53 1e-005 >ref|XP_331916.1| hypothetical protein [Neurospora crassa] gb|EAA35866.1| hypothetical protein [Neurospora crassa] Length = 695 Score = 58.5 bits (140), Expect = 3e-007 Identities = 24/37 (64%), Positives = 32/37 (86%) Frame = -3
++K N+ NYDVWF++ARLEE+ GD+ + REVYERAIA Sbjct: 317 QVKENAKNYDVWFDFARLEESGGDVDRTREVYERAIA 353 Score = 38.5 bits (88), Expect = 0.33 Identities = 14/38 (36%), Positives = 26/38 (68%) Frame = -1 Query: 526 KIGETSGDIEKAREVYERAIANASYPKRKKLWSYFLYI 413 ++ E+ GD+++ REVYERAIA + K+ W ++++ Sbjct: 333 RLEESGGDVDRTREVYERAIAQVPPTQEKRHWRRYIFL 370 --------------- gnl|ti|818410276 name:POAA-aab49f10.g1 mate_pair:818409958 (494 letters)
Score E
Sequences producing significant alignments: (bits) Value ref|XP_781221.1| PREDICTED: similar to prion protein intera... 50 2e-005 ref|XP_639244.1| hypothetical protein DDB0185367 [Dictyoste... 48 1e-004 ref|XP_814425.1| hypothetical protein [Trypanosoma cruzi] >... 48 1e-004 gb|EAN96405.1| phosphotransferase, putative [Trypanosoma cr... 48 1e-004 ref|XP_799850.1| PREDICTED: hypothetical protein XP_794757 ... 47 2e-004 ref|NP_566502.1| exonuclease [Arabidopsis thaliana] >gi|193... 47 3e-004 dbj|BAB02568.1| unnamed protein product [Arabidopsis thaliana] 47 3e-004 ref|XP_800514.1| PREDICTED: hypothetical protein XP_795421,... 47 3e-004 ref|XP_799835.1| PREDICTED: hypothetical protein XP_794742 ... 46 4e-004 ref|XP_800110.1| PREDICTED: hypothetical protein XP_795017 ... 44 0.002 >ref|XP_781221.1| PREDICTED: similar to prion protein interacting protein 1 [Strongylocentrotus purpuratus] Length = 268 Score = 50.4 bits (119), Expect = 2e-005 Identities = 23/44 (52%), Positives = 30/44 (68%) Frame = +3 Query: 357 KGMAVMLKFLRLPLLGRHHCGIDDCKNIWQVVQRLIEKGYRSPQ 488 KGM ML+ L +P +GRHH GIDDC+NI ++Q L K Y+ Q Sbjct: 221 KGMMQMLERLNIPHVGRHHSGIDDCRNIANILQALALKRYKFKQ 264 ---------- gnl|ti|818410294 name:POAA-aab49h07.g1 mate_pair:818409975 (889 letters) Score E
Sequences producing significant alignments: (bits) Value ref|NP_967328.1| putative vitamin B12 transport protein [Bd... 54 9e-006 gb|ABB06290.1| Glutathione peroxidase [Burkholderia sp. 383... 53 2e-005 ref|NP_948965.1| putative glutathione peroxidase [Rhodopseu... 53 2e-005 ref|ZP_00271043.1| COG0386: Glutathione peroxidase [Rhodosp... 53 2e-005 ref|XP_757931.1| hypothetical protein UM01784.1 [Ustilago m... 53 2e-005 ref|NP_841261.1| Glutathione peroxidase [Nitrosomonas europ... 52 3e-005 ref|XP_714295.1| putative glutathione peroxidase/redox tran... 52 3e-005 emb|CAG74736.1| putative vitamin B12 transport periplasmic ... 51 5e-005 ref|YP_297003.1| Glutathione peroxidase [Ralstonia eutropha... 51 5e-005 ref|YP_120880.1| putative glutathione peroxidase [Nocardia ... 51 6e-005 >ref|NP_967328.1| putative vitamin B12 transport protein [Bdellovibrio bacteriovorus HD100] emb|CAE77982.1| putative vitamin B12 transport protein [Bdellovibrio bacteriovorus HD100] Length = 182 Score = 53.5 bits (127), Expect = 9e-006 Identities = 28/53 (52%), Positives = 35/53 (66%) Frame = +2
M+ + I T D K ATL + GKV L+VNVAS+CGLTPQY LE ++ KY Sbjct: 1 MSTLNHIEFNTADGKKATLADYS-GKVLLVVNVASECGLTPQYEGLEKIHQKY 52 ---------- gnl|ti|818409977 name:POAA-aab49h09.b1 mate_pair:818410296 (896 letters)
Score E
Sequences producing significant alignments: (bits) Value gb|EAM74915.1| Glycoside hydrolase, family 20 [Kineococcus ... 65 4e-009 ref|YP_074133.1| N-acetyl-beta-hexosaminidase [Symbiobacter... 64 9e-009 ref|NP_705431.1| hypothetical protein [Plasmodium falciparu... 43 0.013 ref|XP_786225.1| PREDICTED: similar to ankyrin repeat domai... 42 0.022 dbj|BAB80687.1| probable beta-N-acetylhexosaminidase [Clost... 42 0.029 emb|CAE57149.1| Hypothetical protein CBG25082 [Caenorhabdit... 42 0.038 gb|AAY61752.1| unknown [Rickettsia felis URRWXCal2] >gi|674... 39 0.32 emb|CAE56661.1| Hypothetical protein CBG24428 [Caenorhabdit... 39 0.32 ref|NP_360490.1| hypothetical protein RC0853 [Rickettsia co... 38 0.42 emb|CAB73350.1| putative integral membrane protein [Campylo... 38 0.42 >gb|EAM74915.1| Glycoside hydrolase, family 20 [Kineococcus radiotolerans SRS30216] ref|ZP_00617364.1| Glycoside hydrolase, family 20 [Kineococcus radiotolerans SRS30216] Length = 595 Score = 64.7 bits (156), Expect = 4e-009 Identities = 39/127 (30%), Positives = 51/127 (40%) Frame = +3
E+GIPF+V PGTSSWNS+ GR EN GN+ +AAE G +N Sbjct: 348 EAGIPFWVAPGTSSWNSLLGRWENAVGNMVDAAEVGLEN--------------------- 386
A G+L T WGDHGHW ++F + G Sbjct: 387 -------------------------------SAQGFLNTAWGDHGHWDPPSVAFGPALFG 415
W++
Sbjct: 416 GAVSWSL 422 ------------ gnl|ti|818413228 name:POAA-aab50b10.b1 mate_pair:818413549 (901 letters)
Score E
Sequences producing significant alignments: (bits) Value ref|ZP_00053728.2| COG0642: Signal transduction histidine k... 106 1e-021 ref|ZP_00516150.1| Response regulator receiver:ATP-binding ... 105 3e-021 Yüklə 3,49 Mb. Dostları ilə paylaş:
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