Webmaster's Note: As Gerard says below, his Fourth Report came in two parts
Yüklə 3,49 Mb.
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gb|AAV44110.1| unknown protein [Oryza sativa (japonica cult... 44 0.002 gb|EAN99690.1| AMP deaminase, putative [Trypanosoma cruzi] ... 44 0.002 gb|EAN97012.1| AMP deaminase, putative [Trypanosoma cruzi] ... 44 0.002 gb|EAN76947.1| AMP deaminase, putative [Trypanosoma brucei]... 43 0.003 >gb|AAS50977.1| ABR204Cp [Ashbya gossypii ATCC 10895] ref|NP_983153.1| ABR204Cp [Eremothecium gossypii] Length = 771 Score = 45.4 bits (106), Expect = 6e-004 Identities = 18/28 (64%), Positives = 24/28 (85%) Frame = +3
+++ Y+ NPFP FRRGLNV+LSTD+PL Sbjct: 652 LFLTYDKNPFPYYFRRGLNVSLSTDDPL 67 -------------- gnl|ti|818417350 name:POAA-aaa83e04.g1 mate_pair:818417072 (426 letters)
Score E
Sequences producing significant alignments: (bits) Value gb|AAS50977.1| ABR204Cp [Ashbya gossypii ATCC 10895] >gi|45... 45 6e-004 emb|CAG59611.1| unnamed protein product [Candida glabrata C... 45 0.001 gb|AAA34420.1| AMP deaminase (EC 3.5.4.6) 45 0.001 emb|CAA86620.1| AMD1 [Saccharomyces cerevisiae] >gi|1351916... 45 0.001 ref|NP_910462.1| putative AMP deaminase [Oryza sativa (japo... 44 0.001 gb|EAL84883.1| amp deaminase [Aspergillus fumigatus Af293] ... 44 0.002 gb|AAV44110.1| unknown protein [Oryza sativa (japonica cult... 44 0.002 gb|EAN99690.1| AMP deaminase, putative [Trypanosoma cruzi] ... 44 0.002 gb|EAN97012.1| AMP deaminase, putative [Trypanosoma cruzi] ... 44 0.002 gb|EAN76947.1| AMP deaminase, putative [Trypanosoma brucei]... 43 0.003 >gb|AAS50977.1| ABR204Cp [Ashbya gossypii ATCC 10895] ref|NP_983153.1| ABR204Cp [Eremothecium gossypii] Length = 771 Score = 45.4 bits (106), Expect = 6e-004 Identities = 18/28 (64%), Positives = 24/28 (85%) Frame = +3
+++ Y+ NPFP FRRGLNV+LSTD+PL Sbjct: 652 LFLTYDKNPFPYYFRRGLNVSLSTDDPL 679 ----------------------- gnl|ti|818417115 name:POAA-aaa83m24.b1 mate_pair:818417389 (858 letters)
Score E
Sequences producing significant alignments: (bits) Value gb|AAX30301.1| unknown [Schistosoma japonicum] 87 7e-016 emb|CAH00945.1| unnamed protein product [Kluyveromyces lact... 86 2e-015 gb|AAX27748.1| unknown [Schistosoma japonicum] 69 3e-010 emb|CAB51041.1| putative transcription factor [Periplaneta ... 65 2e-009 dbj|BAD26579.1| cytochrome P450 like_TBP [Citrullus lanatus] 62 2e-008 pir||T02955 probable cytochrome P450 monooxygenase - maize ... 52 3e-005 dbj|BAA10929.1| cytochrome P450 like_TBP [Nicotiana tabacum] 50 8e-005 dbj|BAD18905.1| rRNA intron-encoded endonuclease [Thermopro... 49 3e-004 dbj|BAD18906.1| rRNA intron-encoded endonuclease [Thermopro... 46 0.001 dbj|BAB33421.1| putative senescence-associated protein [Pis... 46 0.002 >gb|AAX30301.1| unknown [Schistosoma japonicum] Length = 55
Identities = 40/44 (90%), Positives = 41/44 (93%) Frame = +3
LI DAHEW+NEIPTVPTYYLAKPQPRERAW N RGKKTLLSLTL Sbjct: 5 LISDAHEWMNEIPTVPTYYLAKPQPRERAWRNQRGKKTLLSLTL 48 ---------------------- gnl|ti|818417938 name:POAA-aaa84h19.g1 mate_pair:820219126 (801 letters)
Score E
Sequences producing significant alignments: (bits) Value gb|AAO78405.1| alpha-glucosidase II [Bacteroides thetaiotao... 70 6e-011 ref|ZP_00110705.1| COG1501: Alpha-glucosidases, family 31 o... 69 2e-010 ref|ZP_00600428.1| Alpha-glucosidase [Rubrobacter xylanophi... 67 7e-010 dbj|BAC88138.1| alpha-glucosidase [Gloeobacter violaceus PC... 66 2e-009 ref|ZP_00777973.1| Alpha-glucosidase [Thermoanaerobacter et... 63 1e-008 dbj|BAB76472.1| alpha-glucosidase [Nostoc sp. PCC 7120] >gi... 62 2e-008 dbj|BAB81782.1| alpha-glucosidase [Clostridium perfringens ... 60 9e-008 ref|ZP_00310381.1| COG1501: Alpha-glucosidases, family 31 o... 59 2e-007 dbj|BAB02784.1| alpha glucosidase-like protein [Arabidopsis... 55 2e-006 ref|NP_566736.1| hydrolase, hydrolyzing O-glycosyl compound... 55 2e-006 >gb|AAO78405.1| alpha-glucosidase II [Bacteroides thetaiotaomicron VPI-5482] ref|NP_812211.1| alpha-glucosidase II [Bacteroides thetaiotaomicron VPI-5482] Length = 683
Identities = 40/126 (31%), Positives = 58/126 (46%) Frame = +2
PFR ++I ESPQ +++ LTG MP+ P W LG Sbjct: 142 PFRVFIIDRESPQAVIRGLSELTGTMPMIPRWALG------------------------- 176
YQQCR++Y PD R E+A FR ++IPCDV+W+ ++++ Sbjct: 177 -----------------YQQCRFSYSPDSRVIEIADTFRLKRIPCDVIWMD---IDYMDG 216
Y +FTF
Sbjct: 217 YRIFTF 222 ------------- PP25_Resultat gnl|ti|818417959 name:POAA-aaa84l21.g1 mate_pair:820219148 (559 letters) Score E
Sequences producing significant alignments: (bits) Value ref|NP_189461.1| PMZ [Arabidopsis thaliana] >gi|51971687|db... 70 4e-011 ref|NP_001008364.1| hypothetical protein LOC360772 [Rattus ... 64 4e-009 ref|XP_537924.2| PREDICTED: similar to CG12795-PA isoform 1... 64 4e-009 ref|XP_855651.1| PREDICTED: similar to CG12795-PA isoform 2... 64 4e-009 ref|NP_579927.1| hypothetical protein LOC100494 [Mus muscul... 63 5e-009 gb|EAL84575.1| AN1 zinc finger protein [Aspergillus fumigat... 62 8e-009 emb|CAI30888.1| putative zinc finger protein [Cucumis sativus] 62 1e-008 ref|XP_478767.1| putative arsenite inducible RNA associated... 61 2e-008 ref|XP_870335.1| PREDICTED: similar to CG12795-PA [Bos taurus] 61 2e-008 emb|CAH91694.1| hypothetical protein [Pongo pygmaeus] 61 2e-008 >ref|NP_189461.1| PMZ [Arabidopsis thaliana] dbj|BAD44508.1| putative zinc finger protein (PMZ) [Arabidopsis thaliana] dbj|BAB02638.1| zinc finger protein-like [Arabidopsis thaliana] gb|AAD37511.1| putative zinc finger protein [Arabidopsis thaliana] Length = 186
Identities = 27/44 (61%), Positives = 32/44 (72%) Frame = +2
+LG+HC +P CK+LDFLPF C CK FCLEHRS +H C SD Sbjct: 11 DLGEHCQDPDCKLLDFLPFTCDGCKLVFCLEHRSYKSHNCPKSD 54 --------------- gnl|ti|820219149 name:POAA-aaa84l23.b1 mate_pair:818417960 (832 letters)
Score E
Sequences producing significant alignments: (bits) Value ref|ZP_00673121.1| Guanylate cyclase:GAF [Trichodesmium ery... 92 3e-017 dbj|BAB73603.1| adenylate cyclase [Nostoc sp. PCC 7120] >gi... 84 6e-015 dbj|BAA13999.1| adenylate cyclase [Anabaena sp.] 84 6e-015 dbj|BAB73965.1| adenylate cyclase [Nostoc sp. PCC 7120] >gi... 84 6e-015 ref|YP_320612.1| Adenylate/Guanylate Cyclase [Anabaena vari... 84 6e-015 ref|YP_324235.1| Adenylate/Guanylate Cyclase [Anabaena vari... 84 8e-015 ref|ZP_00107619.1| COG2203: FOG: GAF domain [Nostoc punctif... 83 1e-014 ref|ZP_00108886.1| COG2114: Adenylate cyclase, family 3 (so... 81 5e-014 ref|ZP_00674259.1| Guanylate cyclase:GAF [Trichodesmium ery... 75 3e-012 ref|ZP_00665284.1| GAF [Syntrophobacter fumaroxidans MPOB] ... 70 9e-011 >ref|ZP_00673121.1| Guanylate cyclase:GAF [Trichodesmium erythraeum IMS101] gb|EAO28157.1| Guanylate cyclase:GAF [Trichodesmium erythraeum IMS101] Length = 864
Identities = 50/128 (39%), Positives = 81/128 (63%), Gaps = 2/128 (1%) Frame = +2
++LCMP+ N K E+IGVTQ+INK G F DEQ L AF+AQA +AL+N+QLF Sbjct: 328 NVLCMPVYNAKGELIGVTQLINKNQGS-FTTSDEQFLLAFNAQAGIALQNSQLFENVLVE 386
+ Y + I++S++++V+S D++GR + N + LG +++E + +VW E K++ Sbjct: 387 KQYQKDILRSLSDVVISTDMQGRIVTINEAALEMLGCPINQEVKGQTNRKVW---EEKLI 443
++ VI
Sbjct: 444 GRYLWEVI 451 ------------ gnl|ti|818417960 name:POAA-aaa84l23.g1 mate_pair:820219149 (895 letters)
Score E
Sequences producing significant alignments: (bits) Value ref|ZP_00673121.1| Guanylate cyclase:GAF [Trichodesmium ery... 74 5e-012 ref|YP_320612.1| Adenylate/Guanylate Cyclase [Anabaena vari... 74 7e-012 dbj|BAB73965.1| adenylate cyclase [Nostoc sp. PCC 7120] >gi... 73 1e-011 ref|ZP_00107619.1| COG2203: FOG: GAF domain [Nostoc punctif... 71 4e-011 ref|NP_969440.1| adenylate cyclase [Bdellovibrio bacteriovo... 65 2e-009 ref|ZP_00674259.1| Guanylate cyclase:GAF [Trichodesmium ery... 65 3e-009 ref|ZP_00667553.1| Guanylate cyclase:CHASE2 [Syntrophobacte... 65 3e-009 dbj|BAB73603.1| adenylate cyclase [Nostoc sp. PCC 7120] >gi... 64 9e-009 dbj|BAA13999.1| adenylate cyclase [Anabaena sp.] 64 9e-009 ref|YP_324235.1| Adenylate/Guanylate Cyclase [Anabaena vari... 64 9e-009 >ref|ZP_00673121.1| Guanylate cyclase:GAF [Trichodesmium erythraeum IMS101] gb|EAO28157.1| Guanylate cyclase:GAF [Trichodesmium erythraeum IMS101] Length = 864
Identities = 38/63 (60%), Positives = 47/63 (74%), Gaps = 3/63 (4%) Frame = -1
V+SGNIGS KR++YTVIGDGVNL+SR+E ITK YG ++LSEFTY ++ V E D Sbjct: 712 VVSGNIGSQKRMDYTVIGDGVNLSSRLEAITKQYGCDIILSEFTYQLCSDYILVRELDKV 771
R K
Sbjct: 772 RVK 774 ----------- gnl|ti|820218644 name:POAA-aaa85d18.g1 mate_pair:818417478 (891 letters)
Score E
Sequences producing significant alignments: (bits) Value gb|AAX26869.1| unknown [Schistosoma japonicum] 62 3e-008 dbj|BAD46202.1| hypothetical protein [Oryza sativa (japonic... 50 1e-004 gb|AAT85329.1| protocadherin cluster 1 gamma 1 [Danio rerio] 39 0.24 ref|XP_710281.1| hypothetical protein CaO19.6835 [Candida a... 36 1.6 ref|XP_800322.1| PREDICTED: hypothetical protein XP_795229,... 36 2.0 gb|EAA18799.1| hypothetical protein [Plasmodium yoelii yoelii] 35 3.5 emb|CAG01157.1| unnamed protein product [Tetraodon nigrovir... 35 3.5 gb|EAN71132.1| UDP-N-acetylglucosamine 1-carboxyvinyltransf... 35 4.5 ref|ZP_00639910.1| UDP-N-acetylglucosamine 1-carboxyvinyltr... 35 4.5 ref|ZP_00814693.1| UDP-N-acetylglucosamine 1-carboxyvinyltr... 34 7.8 >gb|AAX26869.1| unknown [Schistosoma japonicum] Length = 102 Score = 61.6 bits (148), Expect = 3e-008 Identities = 30/43 (69%), Positives = 33/43 (76%) Frame = -3
++R L RS AVLTCKS V+ YRGER IE SSWFPPKFPSG Sbjct: 60 SQRKLWWRSVAVLTCKSVVRPGYRGERLIEPSSSWFPPKFPSG 102 Score = 34.3 bits (77), Expect = 5.9 Identities = 14/27 (51%), Positives = 18/27 (66%) Frame = -2 Query: 497 ACHVRSRKTTSYA*VGRSQEKSWWKVV 417 + VR+RK +YA GRSQ K WW+ V Sbjct: 43 SARVRTRKMVNYAWAGRSQRKLWWRSV 69 -------------- gnl|ti|818417530 name:POAA-aaa85p16.b1 mate_pair:820218703 (883 letters)
Score E
Sequences producing significant alignments: (bits) Value ref|XP_640902.1| hypothetical protein DDB0204098 [Dictyoste... 63 2e-008 dbj|BAD97064.1| hypothetical protein FLJ10420 variant [Homo... 50 8e-005 gb|AAH17014.1| Adaptin-ear-binding coat-associated protein ... 50 8e-005 ref|NP_079659.1| adaptin-ear-binding coat-associated protei... 50 8e-005 ref|XP_513068.1| PREDICTED: similar to hypothetical protein... 50 8e-005 ref|XP_535393.2| PREDICTED: similar to Adaptin ear-binding ... 50 8e-005 dbj|BAE33757.1| unnamed protein product [Mus musculus] >gi|... 50 8e-005 dbj|BAB14605.1| unnamed protein product [Homo sapiens] 50 8e-005 sp|Q6P756|NECP2_RAT Adaptin ear-binding coat-associated pro... 50 8e-005 ref|NP_001012855.1| adaptin-ear-binding coat-associated pro... 50 1e-004 >ref|XP_640902.1| hypothetical protein DDB0204098 [Dictyostelium discoideum] gb|EAL66914.1| hypothetical protein DDB0204098 [Dictyostelium discoideum] Length = 329
Identities = 24/34 (70%), Positives = 30/34 (88%) Frame = +2
+AQDWDP+ FIW+GRLVIV +G+ C I+FEDPNN Sbjct: 30 KAQDWDPSSFIWTGRLVIVARGENCVIRFEDPNN 63 Score = 53.1 bits (126), Expect = 1e-005 Identities = 23/31 (74%), Positives = 26/31 (83%) Frame = +3 Query: 294 GEIFALCPVDDTAVEPVTDSSRYFVVRIQDG 386 GEIFA CP D +VEPV DSSRYFV+RI+DG Sbjct: 64 GEIFAQCPFDQNSVEPVVDSSRYFVIRIKDG 94 Score = 52.4 bits (124), Expect = 2e-005 Identities = 20/32 (62%), Positives = 27/32 (84%) Frame = +2 Query: 443 RHAFVGMGFTERNDAFDFNTTILDHLKYVRKR 538 RHAFVGMGFT+R+DAF+FN T+ DH Y++ + Sbjct: 96 RHAFVGMGFTDRDDAFEFNATLQDHQNYIKNK 127 ---------------- nl|ti|818411519 name:POAA-aaa90b10.g1 mate_pair:818411158 (868 letters)
Score E
Sequences producing significant alignments: (bits) Value ref|NP_619643.2| prematurely terminated mRNA decay factor-l... 54 9e-006 ref|XP_517401.1| PREDICTED: similar to prematurely terminat... 54 9e-006 ref|XP_545030.2| PREDICTED: similar to prematurely terminat... 51 6e-005 ref|XP_227717.3| PREDICTED: similar to prematurely terminat... 50 8e-005 dbj|BAC32725.1| unnamed protein product [Mus musculus] 50 1e-004 dbj|BAE33905.1| unnamed protein product [Mus musculus] 50 1e-004 ref|XP_485308.2| PREDICTED: prematurely terminated mRNA dec... 50 1e-004 ref|XP_588126.2| PREDICTED: similar to prematurely terminat... 48 4e-004 ref|XP_648929.1| helicase, putative [Entamoeba histolytica ... 44 0.009 ref|XP_426326.1| PREDICTED: similar to prematurely terminat... 43 0.016 >ref|NP_619643.2| prematurely terminated mRNA decay factor-like [Homo sapiens] dbj|BAC86416.1| unnamed protein product [Homo sapiens] Length = 926 Score = 53.5 bits (127), Expect = 9e-006 Identities = 25/40 (62%), Positives = 31/40 (77%) Frame = -2
VDR+LLGL + NFIRVGS++KIAKPILP++LH N Sbjct: 523 VDRVLLGLLSLGFENFIRVGSVRKIAKPILPYSLHAGSEN 562 --------------- gnl|ti|818411198 name:POAA-aaa90f03.b1 (892 letters) Score E
Sequences producing significant alignments: (bits) Value gb|AAQ97743.1| APG5 autophagy 5-like protein [Danio rerio] ... 48 5e-004 gb|AAH77086.1| APG5 autophagy 5-like protein, isoform 1 [Da... 48 5e-004 ref|XP_694275.1| PREDICTED: similar to APG5 autophagy 5-lik... 48 5e-004 emb|CAJ31276.1| autophagy protein 5 [Gasterosteus aculeatus] 47 7e-004 emb|CAJ31279.1| autophagy protein 5 [Oryzias latipes] 46 0.002 emb|CAJ31280.1| autophagy protein 5 [Pimephales promelas] 46 0.002 emb|CAF94783.1| unnamed protein product [Tetraodon nigrovir... 45 0.003 emb|CAJ31284.1| autophagy protein 5 [Tetraodon nigroviridis] 45 0.003 gb|AAH71093.1| Atg5 protein [Xenopus laevis] 45 0.003 emb|CAJ31285.1| autophagy protein 5 [Xenopus laevis] 45 0.003 >gb|AAQ97743.1| APG5 autophagy 5-like protein [Danio rerio] ref|NP_991181.1| APG5 autophagy 5-like protein isoform 2 [Danio rerio] Length = 275 Score = 47.8 bits (112), Expect = 5e-004 Identities = 19/35 (54%), Positives = 27/35 (77%) Frame = +3
++++ GI P L+ I WL E LSHPDNFL+IS++P Sbjct: 237 QVMIHGIEPLLETPIQWLSEHLSHPDNFLHISIIP 271 --------------------- gnl|ti|818411212 name:POAA-aaa90g07.b1 mate_pair:818411566 (911 letters)
Score E
Sequences producing significant alignments: (bits) Value emb|CAJ00344.1| chloramphenicol acetyltransferase [Aeromona... 250 5e-065 -------------- gnl|ti|818411214 name:POAA-aaa90g09.b1 mate_pair:818411568 (862 letters) Score E
Sequences producing significant alignments: (bits) Value ref|NP_971242.1| chaperone protein DnaK [Treponema denticol... 59 3e-007 gb|AAB48227.1| 70-kDa heat shock protein [unidentified soil... 57 6e-007 emb|CAG86092.1| unnamed protein product [Debaryomyces hanse... 57 1e-006 ref|ZP_00578695.1| Heat shock protein Hsp70 [Sphingopyxis a... 56 1e-006 gb|AAD33464.1| DnaK protein [Chloroflexus aurantiacus] 56 2e-006 gb|AAO17017.1| Putative heat shock 70 KD protein, mitochond... 56 2e-006 ref|ZP_00768714.1| Heat shock protein Hsp70 [Chloroflexus a... 56 2e-006 ref|XP_447319.1| unnamed protein product [Candida glabrata]... 55 4e-006 emb|CAI83407.1| chaperone protein DnaK [Dehalococcoides sp.... 55 4e-006 ref|ZP_00055307.1| COG0443: Molecular chaperone [Magnetospi... 55 4e-006 >ref|NP_971242.1| chaperone protein DnaK [Treponema denticola ATCC 35405] gb|AAS11123.1| chaperone protein DnaK [Treponema denticola ATCC 35405] Length = 646 Score = 58.5 bits (140), Expect = 3e-007 Identities = 28/35 (80%), Positives = 33/35 (94%) Frame = +1
D G+DLS+DR+ALQRLREAAEKAK+ELSSV +TEV Sbjct: 241 DTGIDLSKDRMALQRLREAAEKAKIELSSVANTEV 275 ----------------- gnl|ti|818411568 name:POAA-aaa90g09.g1 mate_pair:818411214 (879 letters)
Score E
Sequences producing significant alignments: (bits) Value emb|CAJ06551.1| heat shock 70-related protein 1, mitochondr... 80 1e-013 emb|CAJ06539.1| heat shock 70-related protein 1, mitochondr... 80 1e-013 emb|CAJ06536.1| heat shock 70-related protein 1, mitochondr... 80 1e-013 emb|CAF94902.1| unnamed protein product [Tetraodon nigrovir... 79 3e-013 gb|AAH67910.1| Hypothetical protein MGC69535 [Xenopus tropi... 77 8e-013 gb|AAH45130.1| Hspa9b-prov protein [Xenopus laevis] 77 8e-013 ref|XP_392147.2| PREDICTED: similar to ENSANGP00000022995 [... 77 8e-013 gb|EAA45310.2| ENSANGP00000022995 [Anopheles gambiae str. P... 75 2e-012 gb|AAF58270.1| CG8542-PA [Drosophila melanogaster] >gi|2143... 73 1e-011 gb|AAA28628.1| heat shock protein cognate 71 73 1e-011 >emb|CAJ06551.1| heat shock 70-related protein 1, mitochondrial precursor, putative [Leishmania major] Length = 652 Score = 79.7 bits (195), Expect = 1e-013 Identities = 37/51 (72%), Positives = 44/51 (86%) Frame = -2
IKV QGEREMAADNQM+G+F L G+PP RGVPQ+EVTF+IDA+G+ VTA Sbjct: 458 IKVFQGEREMAADNQMMGQFDLVGIPPAPRGVPQVEVTFDIDANGICHVTA 508 Score = 71.2 bits (173), Expect = 4e-011 Identities = 38/55 (69%), Positives = 44/55 (80%) Frame = -3 Query: 619 KG*KIRRAHPLSLGIETLGSVVFSRLIPRNSTIPTRKSQTFSTATDGQTQVEIKV 455 KG + PLSLGIETLG V F+R+IP+N+TIPT+KSQTFSTA D QTQV IKV Sbjct: 407 KGLVLLDVTPLSLGIETLGGV-FTRMIPKNTTIPTKKSQTFSTAADNQTQVGIKV 460 Score = 53.9 bits (128), Expect = 7e-006 Identities = 25/38 (65%), Positives = 33/38 (86%) Frame = -2 Query: 767 SRLIPRNSTIPTRKSQTFSTATDGQTQVEIKVRRRKRK 654 +R+IP+N+TIPT+KSQTFSTA D QTQV IKV + +R+ Sbjct: 429 TRMIPKNTTIPTKKSQTFSTAADNQTQVGIKVFQGERE 466 Score = 38.9 bits (89), Expect = 0.24 Identities = 17/28 (60%), Positives = 21/28 (75%) Frame = -2 Query: 407 AADNQMLGRFTLDSLPPLQRGVPQTD*T 324 AADNQM+G+F L +PP RGVPQ + T Sbjct: 468 AADNQMMGQFDLVGIPPAPRGVPQVEVT 495 ---------------- gnl|ti|818413131 name:POAA-aaa91a05.b1 mate_pair:820218031 (916 letters)
Score E
Sequences producing significant alignments: (bits) Value ref|XP_635342.1| hypothetical protein DDB0189300 [Dictyoste... 199 1e-049 gb|AAB69390.1| CtrA [Dictyostelium discoideum] 181 3e-044 ref|XP_635241.1| hypothetical protein DDB0185190 [Dictyoste... 181 3e-044 ref|XP_641447.1| hypothetical protein DDB0205912 [Dictyoste... 128 3e-028 gb|AAH78099.1| Slc7a2-prov protein [Xenopus laevis] 124 4e-027 gb|AAF00645.1| putative cationic amino acid transporter [Ar... 121 3e-026 ref|NP_187022.2| CAT4 (CATIONIC AMINO ACID TRANSPORTER 4); ... 121 3e-026 emb|CAF99150.1| unnamed protein product [Tetraodon nigrovir... 120 7e-026 gb|EAA09874.2| ENSANGP00000016290 [Anopheles gambiae str. P... 116 1e-024 gb|AAF80119.1| Contains similarity to an amino acid transpo... 101 3e-020 >ref|XP_635342.1| hypothetical protein DDB0189300 [Dictyostelium discoideum] gb|EAL61840.1| hypothetical protein DDB0189300 [Dictyostelium discoideum] Length = 546 Score = 199 bits (505), Expect = 1e-049 Identities = 113/238 (47%), Positives = 148/238 (62%), Gaps = 4/238 (1%) Frame = -3
GMV+Y +++ SPLS AF GL +WAA++++ G +T+L A LCSLLGQPRIY QMA Sbjct: 294 GMVNYLDVSQGSPLSDAFIGNGLDMKWAAMIIACGTLTSLTASTLCSLLGQPRIYLQMAK 353
DGL KF +N +QVPVFGT+ T A +LA+ DL LT MISIGTLLAFT VCAG++ Sbjct: 354 DGLFFEKFTSMNKKQVPVFGTVFTGVFASILAIVLDLDNLTNMISIGTLLAFTAVCAGVV 413
V R R D + S ++L+++ A GI KL W W I LG+ + Sbjct: 414 VMRFRR-----EDGGEDGFPSAFILLILFVFACV---FGISSKLGWNMWIQIALGACQAV 465
+ + Q NIPT+FRCP P+LP LG++VNTF I+ L+ S RV WTA+G I Sbjct: 466 IIGLVWLKKQINIPTSFRCPFNPILPCLGIVVNTFFIMHLDTPSFYRVAAWTALGSSI 523 ----------------------- gnl|ti|820218031 name:POAA-aaa91a05.g1 mate_pair:818413131 (901 letters)
Score E
Sequences producing significant alignments: (bits) Value emb|CAD59410.1| SMC2 protein [Oryza sativa] 80 1e-013 dbj|BAD82795.1| SMC2 protein [Oryza sativa (japonica cultiv... 80 1e-013 gb|AAX24251.2| SJCHGC04631 protein [Schistosoma japonicum] 79 2e-013 ref|XP_585705.2| PREDICTED: similar to Structural maintenan... 76 1e-012 ref|XP_638528.1| structural maintenance of chromosome prote... 75 2e-012 ref|XP_692088.1| PREDICTED: similar to SMC2 protein [Danio ... 75 4e-012 emb|CAI16923.1| SMC2 structural maintenance of chromosomes ... 74 5e-012 ref|NP_006435.1| structural maintenance of chromosomes 2-li... 74 5e-012 ref|NP_201047.1| SMC2 (STRUCTURAL MAINTENANCE OF CHROMOSOME... 74 7e-012 gb|AAG27593.2| SMC2-like condensin [Arabidopsis thaliana] >... 74 7e-012 >emb|CAD59410.1| SMC2 protein [Oryza sativa] Length = 1175
Identities = 35/46 (76%), Positives = 44/46 (95%) Frame = +3
Yüklə 3,49 Mb. Dostları ilə paylaş:
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