Webmaster's Note: As Gerard says below, his Fourth Report came in two parts
Yüklə 3,49 Mb.
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ref|XP_638787.1| hypothetical protein DDB0218564 [Dictyoste... 55 3e-006 ref|XP_643726.1| hypothetical protein DDB0167501 [Dictyoste... 55 3e-006 >gb|AAD56609.1| putative calmodulin-binding protein CaM-BP46 [Dictyostelium discoideum] Length = 413 Score = 68.9 bits (167), Expect = 2e-010 Identities = 45/128 (35%), Positives = 65/128 (50%), Gaps = 28/128 (21%) Frame = +1
FNQP+ LP +L+ + GK F+QP N+P ++Q Sbjct: 257 FNQPLAVGTLPPSLENINFGKVFDQPFLPNVLPHHLKSISFHQFSYFSQTFENIPSHVQT 316
+ F YN PITSLPS L +++ S YNHP +D +LP SL H +LG ++ P+ P Sbjct: 317 VEF-GYTYNKPITSLPSHLKYIKFSEKYNHP-IDGVLPQSLTHCYLGKSFKRPLVPGIFP 374
P L+ L+L
Sbjct: 375 PGLKVLIL 382 ------------------------ gnl|ti|818415640 name:POAA-aaa93d10.b1 mate_pair:820218162 (887 letters)
Score E
Sequences producing significant alignments: (bits) Value gb|AAG41774.1| Cat [Promoter probe vector pPR9TT] 486 e-136 ------------------ gnl|ti|820218162 name:POAA-aaa93d10.g1 mate_pair:818415640 (888 letters) Score E
Sequences producing significant alignments: (bits) Value pir||JQ1541 hypothetical 16.9K protein - Salmonella typhimu... 257 4e-067 ------------------ nl|ti|820218177 name:POAA-aaa93f03.g1 mate_pair:818415655 (900 letters) Score E
Sequences producing significant alignments: (bits) Value ref|NP_577805.1| endo-beta-1,3-glucanase [Pyrococcus furios... 52 3e-005 dbj|BAC06195.1| 1,3-(1,3;1,4)-beta-D-glucan 3(4)-glucanohyd... 51 5e-005 emb|CAC14352.1| putative secreted hydrolase [Streptomyces c... 51 6e-005 gb|AAC38290.1| beta-1,3-glucanase II [Oerskovia xanthineoly... 50 8e-005 emb|CAC16455.1| putative secreted hydrolase [Streptomyces c... 49 2e-004 ref|NP_828618.1| putative endo-1,3-beta-glucanase [Streptom... 49 3e-004 dbj|BAD20955.1| beta-1,3-glucanase [Streptomyces sp. AP77] 48 4e-004 gb|AAC44371.1| beta-1,3-glucanase IIa [Oerskovia xanthineol... 48 4e-004 gb|AAD35118.1| laminarinase [Thermotoga maritima MSB8] >gi|... 48 5e-004 ref|XP_641338.1| hypothetical protein DDB0206476 [Dictyoste... 47 7e-004 >ref|NP_577805.1| endo-beta-1,3-glucanase [Pyrococcus furiosus DSM 3638] gb|AAC25554.2| endo-beta-1,3-glucanase precursor [Pyrococcus furiosus] gb|AAL80200.1| endo-beta-1,3-glucanase [Pyrococcus furiosus DSM 3638] Length = 297
Identities = 21/44 (47%), Positives = 30/44 (68%), Gaps = 4/44 (9%) Frame = +3
+EA I++P G LWPAFW+LG+ V WP GEID+ ++ H+ Sbjct: 137 VEARIKLPKGKGLWPAFWMLGSNIREVGWPNCGEIDIMEFLGHE 180 -------------------------- gnl|ti|818415656 name:POAA-aaa93f04.b1 mate_pair:820218178 (855 letters)
Score E
Sequences producing significant alignments: (bits) Value ref|YP_096611.1| glutamine amidotransferase [Legionella pne... 55 3e-006 ref|YP_127858.1| hypothetical protein lpl2529 [Legionella p... 55 3e-006 ref|YP_124964.1| hypothetical protein lpp2659 [Legionella p... 55 3e-006 ref|NP_770405.1| glutamine amidotransferase [Bradyrhizobium... 51 4e-005 ref|ZP_00857068.1| glutamine amidotransferase [Bradyrhizobi... 51 4e-005 ref|XP_762062.1| hypothetical protein UM05915.1 [Ustilago m... 51 6e-005 ref|ZP_00837600.1| glutamine amidotransferase [Shewanella s... 49 3e-004 gb|EAL90526.1| glutamine amidotransferase, putative [Asperg... 46 0.002 emb|CAE47922.1| hypothetical protein, conserved [Aspergillu... 46 0.002 ref|XP_658696.1| hypothetical protein AN1092.2 [Aspergillus... 45 0.003 >ref|YP_096611.1| glutamine amidotransferase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gb|AAU28664.1| glutamine amidotransferase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 288 Score = 55.1 bits (131), Expect = 3e-006 Identities = 23/46 (50%), Positives = 31/46 (67%) Frame = +1
E + + NGDGFG+ WY PEVS PA+FT PAW++ NL + K+ Sbjct: 39 ETKYRTNGDGFGLGWYSPEVSSDPALFTSVYPAWNDRNLLHLTAKI 84 ---------------- gnl|ti|820218185 name:POAA-aaa93f11.g1 mate_pair:818415663 (891 letters)
Score E
Sequences producing significant alignments: (bits) Value ref|XP_659999.1| hypothetical protein AN2395.2 [Aspergillus... 47 7e-004 gb|EAL93747.1| hydrolase, putative [Aspergillus fumigatus A... 44 0.010 ref|NP_822148.1| putative hydrolase [Streptomyces avermitil... 40 0.11 emb|CAB61926.1| putative hydrolase (putative secreted prote... 39 0.24 gb|EAA16395.1| hypothetical protein [Plasmodium yoelii yoelii] 39 0.32 emb|CAB16519.1| Hypothetical protein Y57G11C.18 [Caenorhabd... 37 0.70 emb|CAE70527.1| Hypothetical protein CBG17156 [Caenorhabdit... 36 2.0 ref|NP_700685.1| hypothetical protein PF10_0212 [Plasmodium... 35 2.7 ref|XP_697511.1| PREDICTED: similar to GTPase, IMAP family ... 35 2.7 ref|XP_683458.1| PREDICTED: similar to GTPase, IMAP family ... 35 2.7 >ref|XP_659999.1| hypothetical protein AN2395.2 [Aspergillus nidulans FGSC A4] gb|EAA64506.1| hypothetical protein AN2395.2 [Aspergillus nidulans FGSC A4] Length = 613 Score = 47.4 bits (111), Expect = 7e-004 Identities = 22/48 (45%), Positives = 34/48 (70%), Gaps = 3/48 (6%) Frame = -1
RPQ+ RP+ +QNLNG+W+++ A + DSPPFG++L + + SCL Sbjct: 53 RPQLQRPQ--WQNLNGVWQYRDARNAAAIDSPPFGQSLDTEVLVPSCL 98 ---------------- gnl|ti|820218189 name:POAA-aaa93g04.g1 mate_pair:818415667 (895 letters)
Score E
Sequences producing significant alignments: (bits) Value gb|AAL91497.1| ABC transporter AbcG11 [Dictyostelium discoi... 93 1e-017 ref|XP_646079.1| ABC transporter G family protein [Dictyost... 93 1e-017 gb|AAL91499.1| ABC transporter AbcG14 [Dictyostelium discoi... 87 6e-016 ref|XP_646070.1| ABC transporter G family protein [Dictyost... 87 6e-016 ref|XP_646646.1| ABC transporter G family protein [Dictyost... 86 2e-015 gb|AAL91496.1| ABC transporter AbcG10 [Dictyostelium discoi... 85 4e-015 ref|XP_629362.1| ABC transporter G family protein [Dictyost... 85 4e-015 gb|AAL91502.1| ABC transporter AbcG17 [Dictyostelium discoi... 82 2e-014 gb|AAO51417.1| similar to Dictyostelium discoideum (Slime m... 82 2e-014 ref|XP_644743.1| ABC transporter G family protein [Dictyost... 82 2e-014 >gb|AAL91497.1| ABC transporter AbcG11 [Dictyostelium discoideum] Length = 1441
Identities = 49/120 (40%), Positives = 66/120 (55%) Frame = -3
A+ DKFG++S+Y SV++ G +Y S+FY M TG FTRGGA+L A++ NAF Sbjct: 475 ALVLNDKFGMYSKYLSVLIQGFVYASLFYNMDTDITGLFTRGGAILSAVIFNAF------ 528
LS GE+ F+GRR++QK KSYA+Y P A H+AQV Sbjct: 529 -------------------------LSIGEMAMTFYGRRVLQKHKSYALYRPSALHIAQV 563 Score = 49.7 bits (117), Expect = 1e-004 Identities = 25/52 (48%), Positives = 32/52 (61%) Frame = -2 Query: 228 QVVIDIPVIFLQCLVFSLITYFMYGLDPRADKFFIYLFILTLGALCFSNFFR 73 QVV DIP +Q +FS+I YFM+GL A KFFI+ F L +L + FR Sbjct: 562 QVVTDIPFTAIQVFLFSIIAYFMFGLQYDAGKFFIFCFTLLGASLACTALFR 613 ------------------------------ gnl|ti|818413788 name:POAA-aaa94b01.b1 mate_pair:818414141 (904 letters)
Score E
Sequences producing significant alignments: (bits) Value emb|CAJ00344.1| chloramphenicol acetyltransferase [Aeromona... 129 2e-028 ----------------- gnl|ti|818414141 name:POAA-aaa94b01.g1 mate_pair:818413788 (898 letters) Score E
Sequences producing significant alignments: (bits) Value ref|ZP_00374729.1| conserved hypothetical protein [Wolbachi... 79 2e-013 gb|AAB59124.1| 10.2 kd ORF [Plasmid ColE1] >gi|9507257|ref|... 77 8e-013 ------------------ gnl|ti|818413804 name:POAA-aaa94c05.b1 (900 letters) Score E
Sequences producing significant alignments: (bits) Value gb|AAQ98879.1| asparaginase [Dictyostelium discoideum] 58 5e-007 ref|XP_645400.1| L-asparaginase I [Dictyostelium discoideum... 58 5e-007 ref|YP_269299.1| L-asparaginase I [Colwellia psychrerythrae... 43 0.017 ref|XP_757154.1| hypothetical protein UM01007.1 [Ustilago m... 42 0.022 ref|YP_150795.1| L-Asparaginase I [Salmonella enterica subs... 42 0.022 ref|NP_804981.1| L-Asparaginase I [Salmonella enterica subs... 42 0.022 gb|AAL20219.1| cytoplasmic L-asparaginase I [Salmonella typ... 42 0.022 ref|YP_216303.1| cytoplasmic L-asparaginase I [Salmonella e... 42 0.022 ref|XP_796150.1| PREDICTED: similar to CG6428-PA [Strongylo... 42 0.029 ref|XP_623944.1| PREDICTED: similar to GA19585-PA [Apis mel... 42 0.038 >gb|AAQ98879.1| asparaginase [Dictyostelium discoideum] Length = 435
Identities = 26/36 (72%), Positives = 29/36 (80%) Frame = -1
GFSDE NLL PLEGL++QSYG+GNAPAKK FL Sbjct: 311 GFSDETFTNLLAEPLEGLILQSYGSGNAPAKKSRFL 346 Score = 47.0 bits (110), Expect = 0.001 Identities = 22/33 (66%), Positives = 26/33 (78%) Frame = -2 Query: 671 DINQELIMAQPKGRLRVATKIAKNIAVLHLVPG 573 +IN +L++ QPKGR RV I KNIAVLHLVPG Sbjct: 279 NINYDLVLNQPKGRFRVHETINKNIAVLHLVPG 311 ----------------------- PP27_Resultat
(646 letters) Score E
Sequences producing significant alignments: (bits) Value gb|AAM34394.2| Vig (drosophila vasa intronic gene) ortholog... 47 6e-004 ref|ZP_00573481.1| hypothetical protein Franean1DRAFT_1131 ... 45 0.002 ref|NP_704527.1| hypothetical protein [Plasmodium falciparu... 37 0.67 ref|XP_650374.1| integral membrane protein, putative [Entam... 35 1.9 gb|EAN97080.1| hypothetical protein, conserved [Trypanosoma... 35 2.5 gb|AAX31096.1| SJCHGC09811 protein [Schistosoma japonicum] 34 3.3 gb|AAW26124.1| SJCHGC08974 protein [Schistosoma japonicum] 33 5.7 ref|XP_736975.1| hypothetical protein PC405608.00.0 [Plasmo... 33 5.7 gb|AAW41487.1| nucleoside transporter, putative [Cryptococc... 33 5.7 emb|CAG08643.1| unnamed protein product [Tetraodon nigrovir... 33 5.7 >gb|AAM34394.2| Vig (drosophila vasa intronic gene) ortholog protein 1, isoform b [Caenorhabditis elegans] ref|NP_740970.2| VIG (Drosophila Vasa Intronic Gene) ortholog family member (vig-1) [Caenorhabditis elegans] Length = 165
Identities = 24/45 (53%), Positives = 29/45 (64%) Frame = -2
KC+FL F F L PPFSLLLL A + LL++C LL I FF+ Sbjct: 119 KCLFLIFLFFLVPPFSLLLLSPALSISLLMSCPRFGLLVISRFFF 163 --------- gnl|ti|818413851 name:POAA-aaa94g05.b1 mate_pair:818414199 (911 letters)
Score E
Sequences producing significant alignments: (bits) Value gb|AAG41774.1| Cat [Promoter probe vector pPR9TT] 468 e-130 ------------ gnl|ti|818414199 name:POAA-aaa94g05.g1 mate_pair:818413851 (910 letters)
Score E
Sequences producing significant alignments: (bits) Value pir||JQ1541 hypothetical 16.9K protein - Salmonella typhimu... 185 2e-045 ------------- gnl|ti|818414214 name:POAA-aaa94h09.g1 mate_pair:818413866 (910 letters)
Score E
Sequences producing significant alignments: (bits) Value gb|AAL68895.1| aminotriazole resistance protein [Exophiala ... 72 3e-011 emb|CAA99709.1| unnamed protein product [Saccharomyces cere... 69 2e-010 ref|XP_451545.1| unnamed protein product [Kluyveromyces lac... 69 3e-010 emb|CAB91165.1| SPBC1683.03c [Schizosaccharomyces pombe] >g... 69 3e-010 gb|ABA98467.1| transposon protein, putative, CACTA, En/Spm ... 65 2e-009 ref|NP_477761.1| wsv239 [Shrimp white spot syndrome virus] ... 65 4e-009 gb|EAL91608.1| MFS transporter of unkown specificity [Asper... 64 7e-009 ref|NP_080896.2| hypothetical protein LOC68215 [Mus musculu... 64 9e-009 ref|XP_682639.1| hypothetical protein AN9370.2 [Aspergillus... 63 1e-008 ref|YP_294122.1| putative membrane protein [Emiliania huxle... 63 2e-008 >gb|AAL68895.1| aminotriazole resistance protein [Exophiala dermatitidis] Length = 589 Score = 71.6 bits (174), Expect = 3e-011 Identities = 31/43 (72%), Positives = 36/43 (83%) Frame = +3
T+P +QTYWAQ FV+L+VT WGMDMSFPS I+LSNHMP E Q Sbjct: 463 TMPVKQTYWAQAFVSLIVTCWGMDMSFPSGVIVLSNHMPPEHQ 505 ---------------- gnl|ti|818410726 name:POAA-aaa95b04.b1 mate_pair:818411065 (897 letters)
Score E
Sequences producing significant alignments: (bits) Value ref|XP_642189.1| hypothetical protein DDB0204486 [Dictyoste... 78 4e-013 emb|CAD25854.1| similarity to HYPOTHETICAL PROTEIN YO47_MET... 75 4e-012 ref|NP_082296.1| cleavage and polyadenylation specific fact... 71 6e-011 gb|AAH11155.1| Cleavage and polyadenylation specific factor... 71 6e-011 gb|AAI05304.1| Hypothetical protein LOC298688 [Rattus norve... 71 6e-011 dbj|BAE31460.1| unnamed protein product [Mus musculus] 71 6e-011 dbj|BAE39661.1| unnamed protein product [Mus musculus] 71 6e-011 emb|CAG32473.1| hypothetical protein [Gallus gallus] >gi|61... 70 8e-011 ref|XP_524837.1| PREDICTED: similar to hypothetical protein... 70 1e-010 ref|XP_856205.1| PREDICTED: similar to related to CPSF subu... 69 2e-010 >ref|XP_642189.1| hypothetical protein DDB0204486 [Dictyostelium discoideum] gb|EAL68267.1| hypothetical protein DDB0204486 [Dictyostelium discoideum] Length = 744
Identities = 42/83 (50%), Positives = 50/83 (60%), Gaps = 1/83 (1%) Frame = -2
V S +++ + NK +FD + MG NDARRFPDFSYISK G+F IDCVIITH Sbjct: 14 VGRSCVIVTIGNKNIMFDCGMHMGMNDARRFPDFSYISKNGQFTKVIDCVIITHF----- 68
HLDHCGALP+F Sbjct: 69 ------------HLDHCGALPFF 79 Score = 69.3 bits (168), Expect = 2e-010 Identities = 31/39 (79%), Positives = 35/39 (89%) Frame = -1 Query: 477 MTIKVVPLGAGQDVGRSCVLVSVGGKNIMFDCGMRIFTN 361 MTIKVVPLGAGQDVGRSCV+V++G KNIMFDCGM + N Sbjct: 1 MTIKVVPLGAGQDVGRSCVIVTIGNKNIMFDCGMHMGMN 39 ------------- gnl|ti|818410730 name:POAA-aaa95b08.b1 (888 letters) Score E
Sequences producing significant alignments: (bits) Value gb|AAK13589.1| rRNA intron-encoded homing endonuclease [Ory... 52 4e-005 ref|XP_525925.1| PREDICTED: similar to rRNA intron-encoded ... 50 1e-004 gb|AAL31950.1| CDH1-D [Gallus gallus] 50 1e-004 emb|CAH00949.1| unnamed protein product [Kluyveromyces lact... 49 2e-004 ref|XP_523367.1| PREDICTED: similar to rRNA intron-encoded ... 49 2e-004 emb|CAH00948.1| unnamed protein product [Kluyveromyces lact... 42 0.022 emb|CAH00942.1| unnamed protein product [Kluyveromyces lact... 42 0.022 ref|ZP_00396973.1| hypothetical protein DgeoDRAFT_0651 [Dei... 39 0.24 gb|EAL83773.1| hypothetical protein DgeoDRAFT_1879 [Deinoco... 39 0.24 gb|AAN36071.1| hypothetical protein PF11_0493 [Plasmodium f... 37 1.2 >gb|AAK13589.1| rRNA intron-encoded homing endonuclease [Oryza sativa] Length = 66 Score = 51.6 bits (122), Expect = 4e-005 Identities = 24/35 (68%), Positives = 28/35 (80%) Frame = +2
V+ TP P+ +S+GSGGSMVARLKLKGIDGRA Sbjct: 24 VAYRTPPAPYEKSKSLGSGGSMVARLKLKGIDGRA 58 Score = 35.4 bits (80), Expect = 2.7 Identities = 28/66 (42%), Positives = 35/66 (53%), Gaps = 4/66 (6%) Frame = +1 Query: 463 RRSDTVVVLTINDADQG*DSVHLDSFRT----LEKSRVYGFWGEYGRKAET*RN*RKGTQ 630 RRSDTV+V TINDADQG V ++RT EKS+ G G + + + Sbjct: 4 RRSDTVLVSTINDADQGSADV---AYRTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPP 60
VEPAA
Sbjct: 61 GVEPAA 66 --------------------- gnl|ti|818411082 name:POAA-aaa95c10.g1 (873 letters) Score E
Sequences producing significant alignments: (bits) Value ref|YP_142635.1| unknown [Acanthamoeba polyphaga mimivirus]... 68 5e-010 ref|XP_635642.1| hypothetical protein DDB0188946 [Dictyoste... 66 2e-009 gb|AAO53144.1| similar to Dictyostelium discoideum (Slime m... 63 2e-008 ref|XP_643428.1| hypothetical protein DDB0202531 [Dictyoste... 63 2e-008 ref|YP_142990.1| unknown [Acanthamoeba polyphaga mimivirus]... 62 3e-008 gb|AAD56609.1| putative calmodulin-binding protein CaM-BP46... 61 6e-008 ref|XP_636873.1| putative calmodulin-binding protein CaM-BP... 61 6e-008 ref|XP_646988.1| hypothetical protein DDB0216635 [Dictyoste... 60 8e-008 ref|YP_142640.1| unknown [Acanthamoeba polyphaga mimivirus]... 59 2e-007 ref|XP_643726.1| hypothetical protein DDB0167501 [Dictyoste... 58 4e-007 >ref|YP_142635.1| unknown [Acanthamoeba polyphaga mimivirus] gb|AAV50553.1| unknown [Acanthamoeba polyphaga mimivirus] Length = 292
Identities = 36/104 (34%), Positives = 61/104 (58%), Gaps = 1/104 (0%) Frame = +1
+P + LTF +F++ ++P T+T L+ G F+ V+++P S+ HL G S+ + + Sbjct: 82 IPKNVSRLTFCPQFNKSIDDIPSTITHLSLGAAFNGEVSNIPTSVTHLKLGVSFKRKLSE 141
+P S+THLT+ S +D+ I P + THL F E +S+ VP Sbjct: 142 IPLSVTHLTLNS-YDTEIHGPIPSTITHLAFAEDFNQSINGLVP 184 Score = 56.2 bits (134), Expect = 1e-006 Identities = 31/106 (29%), Positives = 59/106 (55%) Frame = +1 Query: 190 VFQWYTPQKLIDVSHTSVLPNGMKNLTFASKFDQLPHNLPHTLTQLTYGFRFDQPVTSLP 369 VF+ P +I + T ++ +TF ++ N+P +++LT+ +F++ + +P Sbjct: 52 VFKLKNPDHIIPENTTHLV------VTFNQSIGKI--NIPKNVSRLTFCPQFNKSIDDIP 103
++ HL GA++N V ++P+S+THL +G F + P S THL Sbjct: 104 STITHLSLGAAFNGEVSNIPTSVTHLKLGVSFKRKLSEIPLSVTHL 149 Score = 49.7 bits (117), Expect = 1e-004 Identities = 23/73 (31%), Positives = 39/73 (53%) Frame = +1 Query: 298 HNLPHTLTQLTYGFRFDQPVTSLPHSLKHLIFGASYNQPVYSLPSSLTHLTIGSDFDSAI 477 H +P T L F ++P ++ L F +N+ + +PS++THL++G+ F+ + Sbjct: 60 HIIPENTTHLVVTFNQSIGKINIPKNVSRLTFCPQFNKSIDDIPSTITHLSLGAAFNGEV 119
P S THLK G Sbjct: 120 SNIPTSVTHLKLG 132 Score = 38.1 bits (87), Expect = 0.40 Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 1/89 (1%) Frame = +1 Query: 244 LPNGMKNLTFASKFDQLPHNLPHTLTQLTYGFRFDQPVTSLPHSLKHLIFGASYNQPVYS 423 +PN + +L+ S + LP+ + L + F +P ++ HL FG +N + + Sbjct: 201 IPNHIYHLSLNSYEYNKQNELPNYIKFLDIRYIFPVKYKFIPETVTHLSFGNWFNANITT 260
+ ++THL I S ++ I+ P + THL Sbjct: 261 IIPNITHLVIKSCYECLIKNKIPDNITHL 289 Score = 37.0 bits (84), Expect = 0.90 Identities = 23/95 (24%), Positives = 44/95 (46%), Gaps = 2/95 (2%) Frame = +1 Query: 337 FRFDQPVTSLPHSLKHLIFGASYNQPV--YSLPSSLTHLTIGSDFDSAIRAHPHSHTHLK 510 F+ P +P + HL+ ++NQ + ++P +++ LT F+ +I P + THL Sbjct: 53 FKLKNPDHIIPENTTHLV--VTFNQSIGKINIPKNVSRLTFCPQFNKSIDDIPSTITHLS 110
G V VT+ + G + + + +P S Sbjct: 111 LGAAFNGEVSNIPTSVTHLKLGVSFKRKLSEIPLS 145 Score = 37.0 bits (84), Expect = 0.90 Identities = 32/128 (25%), Positives = 55/128 (42%), Gaps = 19/128 (14%) Frame = +1 Query: 238 SVLPNGMKNLTFASKFDQLPHNLPHTLTQLTYGFRFDQPVTSL-PHSLKHL--------- 387 S +P + +LT S ++ +P T+T L + F+Q + L P+ + HL Sbjct: 140 SEIPLSVTHLTLNSYDTEIHGPIPSTITHLAFAEDFNQSINGLVPNFVGHLRIRQYNSNL 199
I+ S N Y+ LP+ + L I F + P + THL FG ++ Sbjct: 200 EIPNHIYHLSLNSYEYNKQNELPNYIKFLDIRYIFPVKYKFIPETVTHLSFGNWFNANIT 259
+P +T+
Sbjct: 260 TIIPNITH 267 -------------------- gnl|ti|818410749 name:POAA-aaa95d06.b1 mate_pair:818411090 (884 letters)
Score E
Sequences producing significant alignments: (bits) Value gb|EAL92890.1| DNA polymerase zeta catalytic subunit, putat... 77 6e-013 ref|XP_366910.1| hypothetical protein MG02986.4 [Magnaporth... 77 8e-013 gb|EAA70967.1| hypothetical protein FG08898.1 [Gibberella z... 77 8e-013 gb|AAY88346.1| REV3 [Neurospora crassa] 75 2e-012 ref|XP_329141.1| hypothetical protein [Neurospora crassa] >... 75 2e-012 gb|ABB46350.1| UPR1 [Neurospora tetrasperma] 75 2e-012 gb|ABB46349.1| UPR1 [Neurospora tetrasperma] 75 4e-012 ref|XP_662393.1| hypothetical protein AN4789.2 [Aspergillus... 74 5e-012 ref|XP_691952.1| PREDICTED: similar to ectonucleotide pyrop... 73 1e-011 ref|XP_595591.2| PREDICTED: similar to DNA polymerase zeta ... 72 3e-011 >gb|EAL92890.1| DNA polymerase zeta catalytic subunit, putative [Aspergillus fumigatus Af293] ref|XP_754928.1| DNA polymerase zeta catalytic subunit [Aspergillus fumigatus Af293] Length = 1656 Score = 77.4 bits (189), Expect = 6e-013 Identities = 37/57 (64%), Positives = 47/57 (82%) Frame = -2
++ RM E+LETR+MVK +K KD K+LQ++L+ RQLALKL+ NVTYGYTSASFSG Sbjct: 1192 LLARMLAEILETRVMVKAGMKMDKDDKALQRLLNNRQLALKLIANVTYGYTSASFSG 1248 Score = 48.1 bits (113), Expect = 4e-004 Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 5/82 (6%) Frame = -3 Query: 804 ARSMETRIMVKRALKRAKDQKSLQKMLDPRQLALKLIL*FIFLHFII-----L*CLSFFD 640 A +ETR+MVK +K KD K+LQ++L+ RQLALKLI + + + C D Sbjct: 1198 AEILETRVMVKAGMKMDKDDKALQRLLNNRQLALKLIANVTYGYTSASFSGRMPCSEIAD 1257
++V +E LE I + +++R Sbjct: 1258 SIVQSGRETLEKAIALIHSVER 1279 Score = 35.0 bits (79), Expect = 3.4 Identities = 15/29 (51%), Positives = 22/29 (75%) Frame = -3 Query: 627 MCKELLETRIMVKRALKRAKDQESLQKML 541 M E+LETR+MVK +K KD ++LQ++L Sbjct: 1196 MLAEILETRVMVKAGMKMDKDDKALQRLL 1224 -------------- gnl|ti|818411090 name:POAA-aaa95d06.g1 Yüklə 3,49 Mb. Dostları ilə paylaş:
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