Webmaster's Note: As Gerard says below, his Fourth Report came in two parts
Yüklə 3,49 Mb.
|
| pir||JQ1541 hypothetical 16.9K protein - Salmonella typhimu... 223 7e-057
gb|AAR02632.1| conserved hypothetical protein [Salmonella t... 199 1e-049 ----------- nl|ti|818410930 name:POAA-aab25e10.g1 mate_pair:818410594 (902 letters) Score E
Sequences producing significant alignments: (bits) Value dbj|BAB33421.1| putative senescence-associated protein [Pis... 65 2e-009 gb|AAS66225.1| LRRG00134 [Rattus norvegicus] 65 4e-009 ref|XP_577589.1| PREDICTED: similar to LRRG00134 [Rattus no... 60 1e-007 ref|XP_648070.1| conserved hypothetical protein [Entamoeba ... 52 2e-005 gb|AAR25995.1| putative senescence-associated protein [Pyru... 50 1e-004 ref|XP_665229.1| senescence-associated protein [Cryptospori... 44 0.010 gb|EAA21327.1| putative senescence-associated protein [Plas... 43 0.017 ref|XP_578859.1| PREDICTED: similar to hypothetical protein... 43 0.017 gb|EAA18798.1| hypothetical protein [Plasmodium yoelii yoelii] 42 0.029 ref|XP_724980.1| hypothetical protein PY04651 [Plasmodium y... 41 0.065 >dbj|BAB33421.1| putative senescence-associated protein [Pisum sativum] Length = 282 Score = 65.5 bits (158), Expect = 2e-009 Identities = 31/36 (86%), Positives = 33/36 (91%) Frame = +2
VNNPTL EFCF+MIGRADIE SKS+VAMNAW PQAS Sbjct: 79 VNNPTLGEFCFTMIGRADIEGSKSNVAMNAWLPQAS 114 Score = 37.7 bits (86), Expect = 0.55 Identities = 25/51 (49%), Positives = 26/51 (50%) Frame = +3 Query: 369 SAYTIGLNHWFLSY*SDLLSGHTAAPKRLLVVKYEGKTKLSHDGLNPAHVP 521 SA T N FLSY +LL H GKT LSHDGL PAHVP Sbjct: 34 SAMTNCANQRFLSYYVELLLRHC---------HQWGKTNLSHDGLIPAHVP 75 --------- gnl|ti|820217001 name:POAA-aab26b08.b1 mate_pair:818409752 (896 letters)
Score E
Sequences producing significant alignments: (bits) Value gb|AAX30301.1| unknown [Schistosoma japonicum] 87 8e-016 ref|XP_453849.1| unnamed protein product [Kluyveromyces lac... 86 2e-015 gb|AAX27748.1| unknown [Schistosoma japonicum] 69 3e-010 emb|CAB51041.1| putative transcription factor [Periplaneta ... 65 2e-009 dbj|BAD26579.1| cytochrome P450 like_TBP [Citrullus lanatus] 62 2e-008 pir||T02955 probable cytochrome P450 monooxygenase - maize ... 52 3e-005 dbj|BAA10929.1| cytochrome P450 like_TBP [Nicotiana tabacum] 50 8e-005 dbj|BAD18905.1| rRNA intron-encoded endonuclease [Thermopro... 49 3e-004 dbj|BAD18906.1| rRNA intron-encoded endonuclease [Thermopro... 46 0.002 dbj|BAB33421.1| putative senescence-associated protein [Pis... 46 0.002 >gb|AAX30301.1| unknown [Schistosoma japonicum] Length = 55 Score = 87.0 bits (214), Expect = 8e-016 Identities = 40/44 (90%), Positives = 41/44 (93%) Frame = +1
LI DAHEW+NEIPTVPTYYLAKPQPRERAW N RGKKTLLSLTL Sbjct: 5 LISDAHEWMNEIPTVPTYYLAKPQPRERAWRNQRGKKTLLSLTL 48 ---------- gnl|ti|818409766 name:POAA-aab26c11.g1 mate_pair:820217014 (915 letters)
Score E
Sequences producing significant alignments: (bits) Value ref|XP_629675.1| hypothetical protein DDB0184302 [Dictyoste... 86 2e-015 ref|XP_477587.1| unknown protein [Oryza sativa (japonica cu... 59 2e-007 ref|XP_532619.2| PREDICTED: similar to FLJ20859 protein iso... 57 1e-006 gb|AAF19677.1| F1N19.17 [Arabidopsis thaliana] 55 3e-006 ref|NP_176641.2| unknown protein [Arabidopsis thaliana] >gi... 55 3e-006 ref|NP_001025162.1| FLJ20859 protein isoform 1 [Homo sapiens] 55 4e-006 gb|AAH05053.1| FLJ20859 protein [Homo sapiens] 55 4e-006 gb|AAK08201.1| false p73 target protein [Homo sapiens] 55 4e-006 ref|XP_709182.1| PREDICTED: similar to MGC80363 protein iso... 55 4e-006 ref|XP_688882.1| PREDICTED: similar to MGC80363 protein iso... 55 4e-006 >ref|XP_629675.1| hypothetical protein DDB0184302 [Dictyostelium discoideum] gb|EAL61267.1| hypothetical protein DDB0184302 [Dictyostelium discoideum] Length = 1241
Identities = 48/127 (37%), Positives = 62/127 (48%) Frame = -3
YI+HRMPGVY CT+RVF E Sbjct: 628 YISHRMPGVYACTHRVFSE----------------------------------------- 646
I +R P F P+S+LD+GSGPGT +W+A ++W IKR+ AVEPS+ M+D Sbjct: 647 ----------INSRLPNFKPTSLLDYGSGPGTVLWSADTIWGDSIKRIRAVEPSTYMSDV 696
AKK+LEG
Sbjct: 697 AKKLLEG 703 -------------------- gnl|ti|818424515 name:POAA-aab27a10.g1 mate_pair:818424175 (879 letters)
Score E
Sequences producing significant alignments: (bits) Value gb|EAN07570.1| Rieske [2Fe-2S] region:FAD dependent oxidore... 75 2e-012 gb|EAL95716.1| Rieske [2Fe-2S] region [Arthrobacter sp. FB2... 75 3e-012 ref|NP_388920.1| hypothetical protein BSU10390 [Bacillus su... 73 1e-011 ref|NP_969084.1| oxidoreductase [Bdellovibrio bacteriovorus... 73 1e-011 ref|ZP_00538366.1| Rieske [2Fe-2S] region:FAD dependent oxi... 72 2e-011 ref|YP_118908.1| putative oxidoreductase [Nocardia farcinic... 72 2e-011 ref|ZP_00800967.1| Rieske (2Fe-2S) region:FAD dependent oxi... 72 3e-011 ref|ZP_00657449.1| Rieske (2Fe-2S) region:FAD dependent oxi... 71 6e-011 ref|YP_314993.1| hypothetical protein Tbd_1235 [Thiobacillu... 70 7e-011 ref|ZP_00335618.1| COG0665: Glycine/D-amino acid oxidases (... 70 7e-011 >gb|EAN07570.1| Rieske [2Fe-2S] region:FAD dependent oxidoreductase [Mesorhizobium sp. BNC1] ref|ZP_00611619.1| Rieske [2Fe-2S] region:FAD dependent oxidoreductase [Mesorhizobium sp. BNC1] Length = 508
Identities = 29/51 (56%), Positives = 39/51 (76%) Frame = +1
R E G + T SA CTH+ IV WN+ +++WDCPCHGSRFD++G+ I GPA+ Sbjct: 442 RQEDGSLITLSATCTHMGCIVGWNEIDRTWDCPCHGSRFDEWGEVIAGPAV 492 Score = 58.2 bits (139), Expect = 4e-007 Identities = 20/32 (62%), Positives = 28/32 (87%) Frame = +2 Query: 356 IVNWNDSEKSWDCPCHGSRFDKYGKCIQGPAI 451 IV WN+ +++WDCPCHGSRFD++G+ I GPA+ Sbjct: 461 IVGWNEIDRTWDCPCHGSRFDEWGEVIAGPAV 492 Score = 57.4 bits (137), Expect = 6e-007 Identities = 20/34 (58%), Positives = 28/34 (82%) Frame = +2 Query: 506 GEFVNWNDSEKSWDCPCHGSRFDKYGKCIQGPAI 607 G V WN+ +++WDCPCHGSRFD++G+ I GPA+ Sbjct: 459 GCIVGWNEIDRTWDCPCHGSRFDEWGEVIAGPAV 492 Score = 52.4 bits (124), Expect = 2e-005 Identities = 17/29 (58%), Positives = 25/29 (86%) Frame = +3 Query: 678 VVNWNDSEKSWDCPCHGSRFDKYGKCIQG 764 +V WN+ +++WDCPCHGSRFD++G+ I G Sbjct: 461 IVGWNEIDRTWDCPCHGSRFDEWGEVIAG 489 ---------- gnl|ti|818424177 name:POAA-aab27a12.b1 mate_pair:818424517 (910 letters)
Score E
Sequences producing significant alignments: (bits) Value gb|AAL31950.1| CDH1-D [Gallus gallus] 72 2e-011 gb|EAA17111.1| hypothetical protein [Plasmodium yoelii yoelii] 57 9e-007 gb|EAA16550.1| hypothetical protein [Plasmodium yoelii yoelii] 54 6e-006 ref|XP_428325.1| PREDICTED: similar to Ac1147, partial [Gal... 46 0.002 emb|CAJ30044.1| hypothetical protein [Magnetospirillum gryp... 45 0.003 ref|XP_740673.1| conserved hypothetical protein [Plasmodium... 43 0.017 ref|ZP_00831711.1| hypothetical protein YintA_01003972 [Yer... 42 0.023 ref|ZP_00827553.1| hypothetical protein YfreA_01004251 [Yer... 42 0.023 ref|ZP_00823799.1| hypothetical protein YmolA_01003823 [Yer... 42 0.023 dbj|BAB66226.1| 109aa long hypothetical protein [Sulfolobus... 36 1.6 >gb|AAL31950.1| CDH1-D [Gallus gallus] Length = 451 Score = 72.4 bits (176), Expect = 2e-011 Identities = 42/76 (55%), Positives = 48/76 (63%) Frame = -2
NDP+AGSPT TLLRLLLPL V + + V P L +PIGSSDGRCVQR Sbjct: 250 NDPSAGSPTETLLRLLLPLDSQVRPSSRRSGRAVADPAGADPRTSLNHPIGSSDGRCVQR 309
AGT+ST+ D LL I Sbjct: 310 AGTYSTRAYDPHLLGI 325 --------- gnl|ti|818424517 name:POAA-aab27a12.g1 mate_pair:818424177 (905 letters)
Score E
Sequences producing significant alignments: (bits) Value gb|EAA16547.1| hypothetical protein [Plasmodium yoelii yoelii] 50 8e-005 emb|CAH00932.1| unnamed protein product [Kluyveromyces lact... 43 0.013 gb|EAA21329.1| hypothetical protein [Plasmodium yoelii yoelii] 37 0.72 ref|YP_056023.1| exodeoxyribonuclease V beta chain [Propion... 37 0.94 emb|CAG01157.1| unnamed protein product [Tetraodon nigrovir... 37 1.2 dbj|BAD87997.1| hypothetical protein [Oryza sativa (japonic... 35 2.7 gb|AAV93453.1| conserved hypothetical protein [Silicibacter... 34 8.0 ref|XP_684058.1| PREDICTED: similar to GREB1 protein isofor... 34 8.0 ref|XP_683664.1| PREDICTED: similar to Kiaa0575 [Danio rerio] 34 8.0 ref|XP_684467.1| PREDICTED: similar to GREB1 protein isofor... 34 8.0 >gb|EAA16547.1| hypothetical protein [Plasmodium yoelii yoelii] Length = 124 Score = 50.4 bits (119), Expect = 8e-005 Identities = 22/40 (55%), Positives = 26/40 (65%) Frame = -3
MT G+W WK SAKECVT H PN + LKMD + Y+A Sbjct: 1 MTVGRWSWKSKSAKECVTTHLPNELALKMDGAKADYRYQA 40 --------- gnl|ti|818424198 name:POAA-aab27c09.b1 mate_pair:818424538 (513 letters)
Score E
Sequences producing significant alignments: (bits) Value gb|AAN45158.1| IS1 ORF2 [Shigella flexneri 2a str. 301] >gi... 81 1e-014 gb|AAA96692.1| InsB [Shigella flexneri] 81 1e-014 gb|AAN45784.1| IS1 ORF2 [Shigella flexneri 2a str. 301] >gi... 80 2e-014 ref|NP_838765.1| IS1 orfB [Shigella flexneri 2a str. 2457T]... 80 2e-014 gb|AAN43305.1| IS1 ORF2 [Shigella flexneri 2a str. 301] >gi... 80 2e-014 ref|NP_839306.1| IS1 orfB [Shigella flexneri 2a str. 2457T]... 80 2e-014 ref|NP_838982.1| IS1 orfB [Shigella flexneri 2a str. 2457T]... 80 2e-014 gb|AAY57552.1| IS1 orfB [Shigella flexneri] >gi|66865681|gb... 80 2e-014 gb|AAN45719.1| IS1 ORF2 [Shigella flexneri 2a str. 301] >gi... 80 2e-014 gb|ABB65997.1| IS1 ORF2 [Shigella boydii Sb227] 80 2e-014 >gb|AAN45158.1| IS1 ORF2 [Shigella flexneri 2a str. 301] ref|NP_709451.1| IS1 ORF2 [Shigella flexneri 2a str. 301] Length = 167
Identities = 49/98 (50%), Positives = 60/98 (61%) Frame = +2
EH GYV AK+R WL + Y IR+ VV V + TLRV +L F +V+ M WP Sbjct: 45 EHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTLATLRVFLSLLSAFEVVVWMTDGWP 104
LYES LKG +H IS YT RIER L+L HL+R+ RK Sbjct: 105 LYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLVRK 142 ----------- gnl|ti|818424199 name:POAA-aab27c10.b1 mate_pair:818424539 (894 letters)
Score E
Sequences producing significant alignments: (bits) Value ref|YP_309947.1| IS1 ORF [Shigella sonnei Ss046] >gi|738550... 394 e-108 ref|NP_417902.1| IS1 protein InsB [Escherichia coli K12] >g... 349 8e-095 ref|NP_863025.1| InsBcp3 [Escherichia coli] >gi|28629340|gb... 347 3e-094 ref|NP_863037.1| InsBcp5 [Escherichia coli] >gi|28629352|gb... 347 3e-094 ref|YP_311280.1| IS1 ORF [Shigella sonnei Ss046] >gi|743128... 346 7e-094 emb|CAD09734.1| putative IS1 transposase [Salmonella enteri... 345 1e-093 ref|ZP_00702652.1| COG1662: Transposase and inactivated der... 345 2e-093 emb|CAE55757.1| hypothetical protein InsB [Escherichia coli... 344 2e-093 ref|YP_313456.1| IS1 ORF2 [Shigella sonnei Ss046] >gi|74314... 344 3e-093 ref|ZP_00706818.1| COG1662: Transposase and inactivated der... 344 3e-093 >ref|YP_309947.1| IS1 ORF [Shigella sonnei Ss046] gb|AAZ87712.1| IS1 ORF [Shigella sonnei Ss046] Length = 194
Identities = 187/191 (97%), Positives = 187/191 (97%) Frame = +3
AV LHRFSTRYAPENH YGHEWRWMPGN HYGRWPQHDFTSLKKLRPQSVTSRIQPGSD Sbjct: 4 AVRLHRFSTRYAPENHLYGHEWRWMPGNCTHYGRWPQHDFTSLKKLRPQSVTSRIQPGSD 63
VIVCAEMDEQWGYVGAKSRQRWLFYAYDSLRKTVVAHVFGERTMATLGRLMSLLSPFDVV Sbjct: 64 VIVCAEMDEQWGYVGAKSRQRWLFYAYDSLRKTVVAHVFGERTMATLGRLMSLLSPFDVV 123
IWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLGRKSLSFSKSVELHDKV Sbjct: 124 IWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLGRKSLSFSKSVELHDKV 183
IGHYLNIKHYQ Sbjct: 184 IGHYLNIKHYQ 194 ------------------------ gnl|ti|818424539 name:POAA-aab27c10.g1 mate_pair:818424199 (903 letters)
Score E
Sequences producing significant alignments: (bits) Value gb|ABB04063.1| SacB [Shuttle/allelic-replacement vector pMQ... 224 4e-057 sp|P94468|SACB_BACST Levansucrase precursor (Beta-D-fructof... 224 4e-057 gb|AAZ04375.1| levansucrase [Cloning vector pJF361] 222 1e-056 gb|AAA72307.1| sacB from B.subtilis; ORF >gi|209130|gb|AAA7... 222 1e-056 gb|AAN75494.1| levansucrase [Bacillus subtilis] 221 3e-056 emb|CAA37179.1| unnamed protein product [Bacillus amyloliqu... 202 2e-050 gb|AAR30560.1| levansucrase [Cloning vector pTARBAC2.1] >gi... 202 2e-050 gb|AAO61298.1| SacB [BAC cloning vector pEBAC190G] >gi|1661... 202 2e-050 pdb|1PT2|A Chain A, Crystal Structure Of Levansucrase (E342... 171 4e-041 pdb|1OYG|A Chain A, Crystal Structure Of Bacillus Subtilis ... 171 4e-041 >gb|ABB04063.1| SacB [Shuttle/allelic-replacement vector pMQ75] gb|ABB04059.1| SacB [Shuttle/allelic-replacement vector pMQ83] gb|ABB04055.1| SacB [Shuttle/allelic-replacement vector pMQ30] ref|NP_391325.1| levansucrase [Bacillus subtilis subsp. subtilis str. 168] emb|CAB15450.1| levansucrase [Bacillus subtilis subsp. subtilis str. 168] emb|CAB08015.1| levansucrase [Bacillus subtilis] emb|CAI39224.1| levansucrase [Bacillus subtilis] emb|CAI39222.1| levansucrase [Bacillus subtilis] gb|AAS67529.1| levansucrase precursor [Cloning vector pDS132] gb|AAB61667.1| levansucrase [Cloning vector pEX18T] gb|AAA57325.1| levansucrase [Cloning vector pEX100T] gb|AAC27031.1| levansucrase [site-specific excision vector pFLP2] gb|AAC27026.1| levansucrase precursor [Cloning vector pEX18Tc] gb|AAC27023.1| levansucrase precursor [Cloning vector pEX18Gm] gb|AAY99784.1| levansucrase [Insertion vector pWSMK-T] gb|AAY99783.1| levansucrase [Insertion vector pWSMK-T] emb|CAA26513.1| levansucrase [Bacillus subtilis] dbj|BAD83818.1| levansucrase [Cloning vector pMV5] gb|AAX23608.1| levansucrase [Cloning vector pEX18ApGW] gb|AAT08994.1| levansucrase [Flp expression vector pFLP3] gb|AAX11247.1| SacB [Gene deletion vector pEX100Tlink] sp|P05655|SACB_BACSU Levansucrase precursor (Beta-D-fructofuranosyl transferase) (Sucrose 6-fructosyl transferase) Length = 473 Score = 224 bits (570), Expect = 4e-057 Identities = 108/110 (98%), Positives = 109/110 (99%) Frame = +3
MNIKKFAKQATVLTFTTALLAGGATQAFAKETNQKPYKETYGISHITRHDMLQIPEQQKN Sbjct: 1 MNIKKFAKQATVLTFTTALLAGGATQAFAKETNQKPYKETYGISHITRHDMLQIPEQQKN 60
EKYQVPEFDSSTIKNISSAKGLDVWDSWPLQNADGTVANYHGYHIVFA + Sbjct: 61 EKYQVPEFDSSTIKNISSAKGLDVWDSWPLQNADGTVANYHGYHIVFALA 110 >sp|P94468|SACB_BACST Levansucrase precursor (Beta-D-fructofuranosyl transferase) (Sucrose 6-fructosyl transferase) gb|AAB97111.1| levansucrase [Geobacillus stearothermophilus] Length = 473
Identities = 108/110 (98%), Positives = 109/110 (99%) Frame = +3
MNIKKFAKQATVLTFTTALLAGGATQAFAKETNQKPYKETYGISHITRHDMLQIPEQQKN Sbjct: 1 MNIKKFAKQATVLTFTTALLAGGATQAFAKETNQKPYKETYGISHITRHDMLQIPEQQKN 60
EKYQVPEFDSSTIKNISSAKGLDVWDSWPLQNADGTVANYHGYHIVFA + Sbjct: 61 EKYQVPEFDSSTIKNISSAKGLDVWDSWPLQNADGTVANYHGYHIVFALA 110 ----------- gnl|ti|818424200 name:POAA-aab27c11.b1 mate_pair:818424540 (910 letters)
Score E
Sequences producing significant alignments: (bits) Value emb|CAE71690.1| Hypothetical protein CBG18665 [Caenorhabdit... 60 1e-007 emb|CAE57169.1| Hypothetical protein CBG00003 [Caenorhabdit... 57 7e-007 emb|CAE75007.1| Hypothetical protein CBG22908 [Caenorhabdit... 55 3e-006 emb|CAE65393.1| Hypothetical protein CBG10341 [Caenorhabdit... 55 3e-006 emb|CAE71792.1| Hypothetical protein CBG18801 [Caenorhabdit... 55 3e-006 emb|CAE72410.1| Hypothetical protein CBG19571 [Caenorhabdit... 55 3e-006 emb|CAE56248.1| Hypothetical protein CBG23887 [Caenorhabdit... 55 3e-006 emb|CAE75004.1| Hypothetical protein CBG22905 [Caenorhabdit... 54 8e-006 emb|CAE71821.1| Hypothetical protein CBG18859 [Caenorhabdit... 53 1e-005 emb|CAE56199.1| Hypothetical protein CBG23823 [Caenorhabdit... 50 1e-004 >emb|CAE71690.1| Hypothetical protein CBG18665 [Caenorhabditis briggsae] Length = 145 Score = 60.1 bits (144), Expect = 1e-007 Identities = 30/40 (75%), Positives = 34/40 (85%) Frame = -2
I+ +K+ K KNSK QKFKNSKIQK KNSKI+KFKN KIQK Sbjct: 1 IKKSKIQKFKNSKNQKFKNSKIQKIKNSKIQKFKNSKIQK 40 Score = 58.2 bits (139), Expect = 4e-007 Identities = 28/36 (77%), Positives = 33/36 (91%) Frame = -1 Query: 388 NKNKKFKNSKIQKFKNSKIQKFKNSQIQKFENSKIK 281 +K +KFKNSK QKFKNSKIQK KNS+IQKF+NSKI+ Sbjct: 4 SKIQKFKNSKNQKFKNSKIQKIKNSKIQKFKNSKIQ 39 --------------- gnl|ti|818424201 name:POAA-aab27c12.b1 mate_pair:818424541 (567 letters)
Score E
Sequences producing significant alignments: (bits) Value ref|YP_386230.1| Biotin/lipoyl attachment:Carbamoyl-phospha... 109 6e-023 ref|YP_295677.1| Biotin/lipoyl attachment:Carbamoyl-phospha... 109 6e-023 ref|YP_294377.1| Biotin/lipoyl attachment:Carbamoyl-phospha... 109 6e-023 ref|YP_283318.1| Biotin/lipoyl attachment:Carbamoyl-phospha... 109 6e-023 ref|ZP_00855471.1| 3-methylcrotonyl-CoA carboxylase alpha s... 108 1e-022 ref|ZP_00850434.1| 3-methylcrotonyl-CoA carboxylase alpha s... 108 1e-022 gb|EAP45974.1| 3-methylcrotonyl-CoA carboxylase alpha subun... 108 1e-022 ref|NP_717502.1| acetyl-CoA carboxylase, biotin carboxylase... 107 2e-022 ref|ZP_00580425.1| Biotin/lipoyl attachment:Carbamoyl-phosp... 107 2e-022 ref|ZP_00813963.1| Biotin/lipoyl attachment:Carbamoyl-phosp... 107 2e-022 >ref|YP_386230.1| Biotin/lipoyl attachment:Carbamoyl-phosphate synthase L chain, ATP-binding:Carbamoyl-phosphate synthetase large chain-like:Biotin carboxylase-like [Geobacter metallireducens GS-15] gb|ABB33505.1| Biotin/lipoyl attachment:Carbamoyl-phosphate synthase L chain, ATP-binding:Carbamoyl-phosphate synthetase large chain-like:Biotin carboxylase-like [Geobacter metallireducens GS-15] Length = 668
Identities = 51/61 (83%), Positives = 54/61 (88%) Frame = -2
YVGAGTVEF+LDED FYFMEMNTRLQVEHP+TEMITGQDLV+WQL VAAG PLP RQ Sbjct: 268 YVGAGTVEFLLDEDGSFYFMEMNTRLQVEHPVTEMITGQDLVEWQLQVAAGAPLPCRQKD 327
L Sbjct: 328 L 328 ---------- gnl|ti|818424211 name:POAA-aab27d10.b1 mate_pair:818424549 (797 letters) Score E
Sequences producing significant alignments: (bits) Value ref|NP_863025.1| InsBcp3 [Escherichia coli] >gi|28629340|gb... 70 6e-011 ref|NP_417902.1| IS1 protein InsB [Escherichia coli K12] >g... 70 6e-011 ref|ZP_00706818.1| COG1662: Transposase and inactivated der... 70 6e-011 ref|YP_311947.1| IS1 ORF [Shigella sonnei Ss046] >gi|738570... 70 6e-011 ref|YP_309947.1| IS1 ORF [Shigella sonnei Ss046] >gi|738550... 70 6e-011 emb|CAE55757.1| hypothetical protein InsB [Escherichia coli... 70 8e-011 emb|CAD09734.1| putative IS1 transposase [Salmonella enteri... 70 8e-011 ref|NP_863037.1| InsBcp5 [Escherichia coli] >gi|28629352|gb... 70 8e-011 ref|ZP_00711121.1| COG1662: Transposase and inactivated der... 68 4e-010 ref|ZP_00702652.1| COG1662: Transposase and inactivated der... 68 4e-010 ----------- gnl|ti|818424217 name:POAA-aab27e04.b1 mate_pair:818424554 (922 letters) Score E
Sequences producing significant alignments: (bits) Value emb|CAA52151.1| actin-like protein [Gallus gallus] >gi|4538... 55 3e-006 emb|CAD71133.1| probable actin-like protein ACT2 [Neurospor... 55 5e-006 gb|AAH36253.1| ACTR2 protein [Homo sapiens] 54 6e-006 dbj|BAC28126.1| unnamed protein product [Mus musculus] 54 6e-006 gb|AAH47530.1| Actr2 protein [Mus musculus] 54 6e-006 gb|AAV38182.1| ARP2 actin-related protein 2 homolog (yeast)... 54 6e-006 ref|XP_580624.2| PREDICTED: similar to actin-related protei... 54 6e-006 gb|AAH14546.1| Actin-related protein 2 [Homo sapiens] 54 6e-006 emb|CAH93316.1| hypothetical protein [Pongo pygmaeus] >gi|6... 54 6e-006 ref|XP_866190.1| PREDICTED: similar to actin-related protei... 54 6e-006 >emb|CAA52151.1| actin-like protein [Gallus gallus] ref|NP_990555.1| ARP2 actin-related protein 2 homolog [Gallus gallus] sp|P53488|ARP2_CHICK Actin-like protein 2 (Actin-related protein 2) (Actin-like protein ACTL)
Length = 394 Score = 55.5 bits (132), Expect = 3e-006 Identities = 25/64 (39%), Positives = 41/64 (64%), Gaps = 2/64 (3%) Frame = +3
+W+ F EKL +DTKN KILL PP+ + ++ E++ E +QF G+ + A++ LY Sbjct: 88 LWDYTFGPEKLNIDTKNCKILLTEPPMNPTKNREKIVEVMFETYQFSGVYVAIQAVLTLY 147
+QG+
Sbjct: 148 AQGL 151 -------------- gnl|ti|818424220 name:POAA-aab27e08.b1 mate_pair:818424556 (792 letters)
Score E
Sequences producing significant alignments: (bits) Value gb|ABB17069.1| chloramphenicol acetyl transferase [Moss gen... 365 e-100 -------------- gnl|ti|818424556 name:POAA-aab27e08.g1 Yüklə 3,49 Mb. Dostları ilə paylaş:
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