Webmaster's Note: As Gerard says below, his Fourth Report came in two parts
Yüklə 3,49 Mb.
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| Query: 623 VKIGT*RSF*ATNLREIK*PIFGNMLVNNK*Y*NKMFYS*DLVQVVYERARLQQQLSGTG 444
+ V+YER+R+Q + +G G Sbjct: 666 ----------------------------------------QAMLVIYERSRIQAKAAGMG 685
+ML V L+ + Sbjct: 686 KMLAVGLAEE 695 ---------------------- gnl|ti|818424390 name:POAA-aab29e09.g1 mate_pair:818424044 (915 letters)
Score E
Sequences producing significant alignments: (bits) Value ref|XP_645909.1| hypothetical protein DDB0190208 [Dictyoste... 59 3e-007 ref|NP_841435.1| putative type I polyketide synthase WcbR [... 54 8e-006 ref|XP_361278.1| hypothetical protein MG03752.4 [Magnaporth... 54 8e-006 gb|AAF19810.1| MtaB [Stigmatella aurantiaca] 54 8e-006 ref|YP_120537.1| putative polyketide synthase [Nocardia far... 53 3e-005 ref|YP_116395.1| putative polyketide synthase [Nocardia far... 50 2e-004 ref|XP_793564.1| PREDICTED: similar to fatty acid synthase ... 50 2e-004 gb|AAK57190.1| MxaF [Stigmatella aurantiaca] 50 2e-004 gb|AAK81287.1| Polyketide synthase pksE (short-chain alcoho... 49 4e-004 ref|XP_682179.1| hypothetical protein AN8910.2 [Aspergillus... 49 4e-004 >ref|XP_645909.1| hypothetical protein DDB0190208 [Dictyostelium discoideum] gb|EAL72032.1| hypothetical protein DDB0190208 [Dictyostelium discoideum] Length = 3147
Identities = 26/59 (44%), Positives = 39/59 (66%), Gaps = 1/59 (1%) Frame = +2
+P N + SIPFD+ + ++ + FP +K+V IGINSFGFGG+N H +++EY N Sbjct: 403 VPSINCSNLNPSIPFDQYNISVIREIRQFPTDKLVNIGINSFGFGGSNCHLIIQEYNNN 461 --------
gnl|ti|818424066 name:POAA-aab29g09.b1 mate_pair:818424411 (597 letters)
Score E
Sequences producing significant alignments: (bits) Value ref|NP_062861.1| hypothetical protein PhpooMp16 [Physarum p... 192 1e-047 ref|NP_701691.1| hypothetical protein PFL1645w [Plasmodium ... 35 4.1 emb|CAG91026.1| unnamed protein product [Debaryomyces hanse... 33 9.9 >ref|NP_062861.1| hypothetical protein PhpooMp16 [Physarum polycephalum] dbj|BAB08095.1| ORF15 [Physarum polycephalum] Length = 126 Score = 192 bits (448), Expect = 1e-047 Identities = 85/96 (88%), Positives = 89/96 (92%) Frame = -3
MNDVQQA DPSTVIQDP+YLDS KQ D H+STFLHN+RNQFRNAYTIHKSNLNLLKVNLE Sbjct: 1 MNDVQQASDPSTVIQDPLYLDSIKQLDIHLSTFLHNMRNQFRNAYTIHKSNLNLLKVNLE 60
QWNTTYEAAIAAL AKIWK IPSNITQFT+LHYFL Sbjct: 61 LQWNTTYEAAIAALFAKIWKFIPSNITQFTDLHYFL 96 Score = 71.2 bits (160), Expect = 4e-011 Identities = 31/32 (96%), Positives = 31/32 (96%) Frame = -1 Query: 186 FL*LLVIFTQGPHPTDVSLKNPLFTPKQLHLE 91 FL LLVIFTQGPHPTDVSLKNPLFTPKQLHLE Sbjct: 95 FLKLLVIFTQGPHPTDVSLKNPLFTPKQLHLE 126 -------------------------- gnl|ti|818424077 name:POAA-aab29h09.b1 mate_pair:818424422 (907 letters)
Score E
Sequences producing significant alignments: (bits) Value ref|XP_646449.1| hypothetical protein DDB0216728 [Dictyoste... 54 8e-006 ref|XP_587376.2| PREDICTED: similar to lactamase, beta [Bos... 41 0.070 ref|XP_870688.1| PREDICTED: similar to lactamase, beta isof... 41 0.070 gb|AAH37198.1| LACTB protein [Homo sapiens] 40 0.13 gb|AAH46293.1| Lactb protein [Mus musculus] 40 0.13 gb|AAH95252.1| Hypothetical protein LOC553619 [Danio rerio]... 40 0.13 ref|NP_741982.1| lactamase, beta isoform b [Homo sapiens] 40 0.13 ref|NP_116246.2| lactamase, beta isoform a [Homo sapiens] >... 40 0.13 dbj|BAE28858.1| unnamed protein product [Mus musculus] 40 0.13 ref|XP_696650.1| PREDICTED: similar to lactamase, beta [Dan... 40 0.13 >ref|XP_646449.1| hypothetical protein DDB0216728 [Dictyostelium discoideum] gb|EAL72851.1| hypothetical protein DDB0216728 [Dictyostelium discoideum] Length = 1172
Identities = 23/35 (65%), Positives = 29/35 (82%) Frame = +1
ADVEN +P+ T SK+RVASISKA TS +GVL+E+ Sbjct: 839 ADVENVIPMETSSKLRVASISKALTSIGLGVLFEQ 873 -------------------- gnl|ti|818424424 name:POAA-aab29h11.g1 mate_pair:818424079 (881 letters)
Score E
Sequences producing significant alignments: (bits) Value emb|CAD27357.1| hypothetical protein [Drosophila melanogaster] 89 2e-016 gb|AAR99086.1| SD14423p [Drosophila melanogaster] >gi|13124... 89 2e-016 dbj|BAA01703.1| ORF [Drosophila simulans] 89 2e-016 pir||PC1232 copia polyprotein - fruit fly (Drosophila simul... 89 2e-016 emb|CAA26446.1| unnamed protein product [Drosophila melanog... 89 2e-016 prf||1107279B ORF g 89 2e-016 emb|CAB71063.1| copia-type polyprotein [Arabidopsis thaliana] 88 8e-016 gb|AAD50001.1| Hypothetical protein [Arabidopsis thaliana] 88 8e-016 emb|CAI72292.1| putative polyprotein [Phytophthora infestans] 86 3e-015 gb|AAG60117.1| copia-type polyprotein, putative [Arabidopsi... 85 4e-015 >emb|CAD27357.1| hypothetical protein [Drosophila melanogaster] Length = 1017 Score = 89.3 bits (203), Expect = 2e-016 Identities = 40/107 (37%), Positives = 67/107 (62%) Frame = -3
AE+ AL+E VRE + L+ LL + ++ +++EDNQ I + + + H R KH+D+KY Sbjct: 904 AEYMALFEAVREALWLKFLLTSINIKLENPIKIYEDNQGCISIANNPSCHKRAKHIDIKY 963
H+ +EQ+ + + ++YI T++ LAD FTK P F E+ ++GL Sbjct: 964 HFAREQV--QNNVICLEYIPTENQLADIFTKPLPAARFVELRDKLGL 1008 --------- gnl|ti|818413702 name:POAA-aab30b06.b1 mate_pair:818414058 (905 letters)
Score E
Sequences producing significant alignments: (bits) Value emb|CAA57417.1| putative RNA helicase [Dictyostelium discoi... 66 3e-009 gb|AAO53218.1| similar to Dictyostelium discoideum (Slime m... 66 3e-009 ref|XP_643509.1| putative RNA helicase [Dictyostelium disco... 66 3e-009 gb|AAW41818.1| pre-mRNA splicing factor, putative [Cryptoco... 62 4e-008 gb|EAL32254.1| GA19457-PA [Drosophila pseudoobscura] 62 4e-008 gb|AAL13744.1| LD21880p [Drosophila melanogaster] 61 8e-008 gb|AAV36975.1| LD41277p [Drosophila melanogaster] >gi|72930... 61 8e-008 ref|XP_586902.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-As... 59 3e-007 dbj|BAE22002.1| unnamed protein product [Mus musculus] 59 3e-007 ref|XP_619101.1| PREDICTED: DEAD box polypeptide 46 [Mus mu... 59 3e-007 >emb|CAA57417.1| putative RNA helicase [Dictyostelium discoideum] Length = 582 Score = 65.7 bits (147), Expect = 3e-009 Identities = 26/37 (70%), Positives = 34/37 (91%) Frame = +3
HRVGRTGRAG +GTAYTFITPDE++F++ +++ALE S Sbjct: 355 HRVGRTGRAGNRGTAYTFITPDEERFSSSIIKALEQS 391 ----------- gnl|ti|818414062 name:POAA-aab30b10.g1 mate_pair:818413706 (897 letters)
Score E
Sequences producing significant alignments: (bits) Value ref|XP_629514.1| hypothetical protein DDB0184466 [Dictyoste... 65 4e-009 ref|NP_473184.1| ubiquitin-conjugating enzyme E2, putative ... 64 7e-009 gb|EAA17987.1| Plasmodium vivax PV1H14205_P [Plasmodium yoe... 64 1e-008 gb|AAF99487.1| PV1H14205_P [Plasmodium vivax] 63 2e-008 ref|NP_566968.1| ubiquitin conjugating enzyme/ ubiquitin-li... 62 3e-008 ref|XP_746242.1| ubiquitin-conjugating enzyme E2, putative ... 62 3e-008 ref|NP_850684.1| ubiquitin conjugating enzyme/ ubiquitin-li... 62 3e-008 emb|CAA96792.1| unnamed protein product [Saccharomyces cere... 62 3e-008 gb|AAZ20287.1| ubiquitin-conjugating enzyme 2 [Arachis hypo... 50 2e-004 ref|XP_469523.1| putative DNA-binding protein [Oryza sativa... 46 0.002 >ref|XP_629514.1| hypothetical protein DDB0184466 [Dictyostelium discoideum] gb|EAL61101.1| hypothetical protein DDB0184466 [Dictyostelium discoideum] Length = 138
Identities = 28/43 (65%), Positives = 36/43 (83%) Frame = -2
KN ILSNW+SK I+ IL ELR+EM++++NKKL QPPEGA+F Sbjct: 96 KNLPILSNWTSKNRIQNILSELRREMSSSSNKKLVQPPEGANF 138 Score = 44.7 bits (97), Expect = 0.007 Identities = 15/20 (75%), Positives = 18/20 (90%) Frame = -1 Query: 774 ENRIYSLKIFCDKDYPQKPP 715 +NR YSLK++CDKDYP KPP Sbjct: 54 DNRFYSLKLYCDKDYPNKPP 73 --------
gnl|ti|818414068 name:POAA-aab30c06.g1 mate_pair:818413713 (910 letters)
Score E
Sequences producing significant alignments: (bits) Value gb|AAK13589.1| rRNA intron-encoded homing endonuclease [Ory... 55 5e-006 ref|XP_525925.1| PREDICTED: similar to rRNA intron-encoded ... 53 3e-005 emb|CAH00949.1| unnamed protein product [Kluyveromyces lact... 52 4e-005 ref|XP_523367.1| PREDICTED: similar to rRNA intron-encoded ... 51 1e-004 ref|ZP_00396973.1| hypothetical protein DgeoDRAFT_0651 [Dei... 41 0.071 gb|EAL83773.1| hypothetical protein DgeoDRAFT_1879 [Deinoco... 41 0.071 gb|ABA27052.1| TO71-3 [Taraxacum officinale] 40 0.17 emb|CAG01157.1| unnamed protein product [Tetraodon nigrovir... 40 0.17 gb|AAN36071.1| hypothetical protein PF11_0493 [Plasmodium f... 39 0.41 dbj|BAD90390.1| mFLJ00348 protein [Mus musculus] 38 0.55 >gb|AAK13589.1| rRNA intron-encoded homing endonuclease [Oryza sativa] Length = 66 Score = 55.2 bits (122), Expect = 5e-006 Identities = 24/35 (68%), Positives = 28/35 (80%) Frame = -2
V+ TP P+ +S+GSGGSMVARLKLKGIDGRA Sbjct: 24 VAYRTPPAPYEKSKSLGSGGSMVARLKLKGIDGRA 58 Score = 35.8 bits (76), Expect = 3.1 Identities = 28/66 (42%), Positives = 35/66 (53%), Gaps = 4/66 (6%) Frame = -1 Query: 364 RRSDTVVVLTINDADQG*DSVHLDSFRT----LEKSRVYGFWGEYGRKAET*RN*RKGTQ 197 RRSDTV+V TINDADQG V ++RT EKS+ G G + + + Sbjct: 4 RRSDTVLVSTINDADQGSADV---AYRTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPP 60
VEPAA
Sbjct: 61 GVEPAA 66 ------------ gnl|ti|818413742 name:POAA-aab30e11.b1 mate_pair:818414097 (447 letters)
Score E
Sequences producing significant alignments: (bits) Value sp|P36422|SYI_TETTH Isoleucyl-tRNA synthetase (Isoleucine--... 42 0.013 ref|XP_414300.1| PREDICTED: similar to Isoleucyl-tRNA synth... 42 0.013 ref|XP_541332.2| PREDICTED: similar to Isoleucyl-tRNA synth... 42 0.017 ref|NP_742012.1| isoleucine-tRNA synthetase [Mus musculus] ... 41 0.031 gb|AAH67029.1| Isoleucine-tRNA synthetase [Mus musculus] >g... 41 0.031 dbj|BAE22837.1| unnamed protein product [Mus musculus] 41 0.031 ref|XP_642268.1| isoleucine-tRNA ligase [Dictyostelium disc... 40 0.041 emb|CAG99966.1| unnamed protein product [Kluyveromyces lact... 38 0.18 ref|XP_360677.1| hypothetical protein MG03220.4 [Magnaporth... 38 0.18 emb|CAA17821.1| SPBC8D2.06 [Schizosaccharomyces pombe] >gi|... 37 0.43 >sp|P36422|SYI_TETTH Isoleucyl-tRNA synthetase (Isoleucine--tRNA ligase) (IleRS) gb|AAA30122.1| transfer RNA-Ile synthetase Length = 1081 Score = 42.2 bits (91), Expect = 0.013 Identities = 22/33 (66%), Positives = 24/33 (72%), Gaps = 1/33 (3%) Frame = -2
I H+TI SQ GK VLRR+DEVFD FESG Y Sbjct: 509 IDHLTIPSQKGKGVLRRIDEVFDCWFESGSMPY 541 -------------- gnl|ti|818414112 name:POAA-aab30g02.g1 mate_pair:818413757 (873 letters)
Score E
Sequences producing significant alignments: (bits) Value gb|AAO53070.1| similar to Arabidopsis thaliana (Mouse-ear c... 170 8e-041 ref|XP_643097.1| hypothetical protein DDB0217802 [Dictyoste... 170 8e-041 emb|CAG59561.1| unnamed protein product [Candida glabrata C... 163 1e-038 gb|EAL26077.1| GA14870-PA [Drosophila pseudoobscura] 155 4e-036 gb|EAL26076.1| GA14286-PA [Drosophila pseudoobscura] 155 4e-036 gb|EAA13061.3| ENSANGP00000004833 [Anopheles gambiae str. P... 154 5e-036 ref|NP_009376.1| Integral membrane Ca(2+)-ATPase, potential... 153 9e-036 gb|AAT94450.1| RE35187p [Drosophila melanogaster] 149 1e-034 gb|AAM68575.1| CG17034-PC, isoform C [Drosophila melanogast... 149 1e-034 gb|AAF58378.2| CG17034-PA, isoform A [Drosophila melanogast... 149 1e-034 >gb|AAO53070.1| similar to Arabidopsis thaliana (Mouse-ear cress). At1g59820/F23H11_14 [Dictyostelium discoideum] Length = 1829 Score = 170 bits (396), Expect = 8e-041 Identities = 75/170 (44%), Positives = 125/170 (73%), Gaps = 4/170 (2%) Frame = -1
+K+ CKGADSVIF R + +G+ ++T+ H++EFA GLRTLC + +E + + W Sbjct: 1243 IKIYCKGADSVIFERAKKNTDHCVGILQSTEKHLSEFACSGLRTLCMSVRTIEHEEYIAW 1302
+ I+ +A++S+ +A++VD A E IE + L+G+ GIED+LQ VP +++L+EAGI VW Sbjct: 1303 NKIHQEASISLVKKAEKVDAACELIEKDLLLIGSTGIEDRLQDHVPETISALREAGIKVW 1362
VLTGDK ETAI+++T ++V+ ++M++ I+ E+N++AL++RL T+S++ L Sbjct: 1363 VLTGDKQETAISISTSSAVINEEMELIILNESNKQALMKRLLTISNEKRL 1412 --------- gnl|ti|818413768 name:POAA-aab30h01.b1 mate_pair:818414123 (754 letters)
Score E
Sequences producing significant alignments: (bits) Value gb|AAK21974.1| rRNA promoter binding protein [Rattus norveg... 71 5e-011 gb|AAS66225.1| LRRG00134 [Rattus norvegicus] 46 0.003 ref|XP_425688.1| PREDICTED: similar to TGFB-induced factor ... 39 0.23 emb|CAH00939.1| unnamed protein product [Kluyveromyces lact... 38 0.42 emb|CAB52874.1| SPCC830.01c [Schizosaccharomyces pombe] 38 0.42 ref|NP_588472.2| hypothetical protein SPCC1620.14c [Schizos... 38 0.42 emb|CAH00931.1| unnamed protein product [Kluyveromyces lact... 38 0.56 emb|CAA29027.1| unnamed protein product [Baboon endogenous ... 38 0.56 dbj|BAA89659.1| gag-pol precursor polyprotein [Baboon endog... 38 0.56 >gb|AAK21974.1| rRNA promoter binding protein [Rattus norvegicus] ref|NP_671477.1| rRNA promoter binding protein [Rattus norvegicus] Length = 295
Identities = 36/57 (63%), Positives = 40/57 (70%), Gaps = 1/57 (1%) Frame = -1
AS+ A PA L P+ TQP+EPILIPKLRIRLA+FPY PE HLGDLLRI Sbjct: 135 ASSSRGARPAPLRAPARPTQPLEPILIPKLRIRLADFPYLHCSNMPEAVHLGDLLRI 191 -------------------- gnl|ti|818414123 name:POAA-aab30h01.g1 mate_pair:818413768 (893 letters)
Score E
Sequences producing significant alignments: (bits) Value dbj|BAB33421.1| putative senescence-associated protein [Pis... 75 7e-012 gb|AAS66225.1| LRRG00134 [Rattus norvegicus] 74 1e-011 ref|XP_577589.1| PREDICTED: similar to LRRG00134 [Rattus no... 68 5e-010 ref|XP_648070.1| conserved hypothetical protein [Entamoeba ... 60 1e-007 gb|AAR25995.1| putative senescence-associated protein [Pyru... 57 1e-006 ref|XP_665229.1| senescence-associated protein [Cryptospori... 51 1e-004 ref|XP_578859.1| PREDICTED: similar to hypothetical protein... 50 2e-004 gb|EAA18798.1| hypothetical protein [Plasmodium yoelii yoelii] 48 6e-004 gb|EAA16545.1| hypothetical protein [Plasmodium yoelii yoelii] 48 9e-004 gb|EAA21327.1| putative senescence-associated protein [Plas... 46 0.002 >dbj|BAB33421.1| putative senescence-associated protein [Pisum sativum] Length = 282
Identities = 32/36 (88%), Positives = 34/36 (94%) Frame = +2
VNNPTL EFCF+MIGRADIEGSKS+VAMNAW PQAS Sbjct: 79 VNNPTLGEFCFTMIGRADIEGSKSNVAMNAWLPQAS 114
Identities = 26/51 (50%), Positives = 27/51 (52%) Frame = +3
SA T N FLSY +LL H GKTNLSHDGL PAHVP Sbjct: 34 SAMTNCANQRFLSYYVELLLRHCHQ---------WGKTNLSHDGLIPAHVP 75 ---------------- gnl|ti|818410974 name:POAA-aab31a11.g1 mate_pair:818410637 (889 letters)
Score E
Sequences producing significant alignments: (bits) Value ref|XP_637789.1| hypothetical protein DDB0186863 [Dictyoste... 56 2e-006 ref|XP_693729.1| PREDICTED: similar to TBP-associated facto... 53 3e-005 emb|CAF91684.1| unnamed protein product [Tetraodon nigrovir... 50 1e-004 emb|CAF89261.1| unnamed protein product [Tetraodon nigrovir... 50 1e-004 ref|NP_003963.1| BTAF1 RNA polymerase II, B-TFIID transcrip... 46 0.002 ref|XP_873042.1| PREDICTED: similar to TATA-binding-protein... 45 0.005 ref|XP_543929.2| PREDICTED: similar to TATA-binding-protein... 45 0.005 ref|XP_421689.1| PREDICTED: similar to TBP-associated facto... 44 0.009 ref|XP_347207.2| PREDICTED: similar to TBP-associated facto... 44 0.012 ref|XP_788365.1| PREDICTED: similar to TBP-associated facto... 40 0.22 >ref|XP_637789.1| hypothetical protein DDB0186863 [Dictyostelium discoideum] gb|EAL64285.1| hypothetical protein DDB0186863 [Dictyostelium discoideum] Length = 2005 Score = 56.1 bits (124), Expect = 2e-006 Identities = 23/45 (51%), Positives = 31/45 (68%) Frame = -1
K +TEQPQ S KIV+ES++D +K ++ EWPF + DL DLF Sbjct: 302 KQHITEQPQDSGKIVMESILDVDKAYNQDEWPFTSIFNDLVIDLF 346 ---------------- gnl|ti|818410646 name:POAA-aab31b08.b1 mate_pair:818410983 (891 letters)
Score E
Sequences producing significant alignments: (bits) Value ref|YP_309947.1| IS1 ORF [Shigella sonnei Ss046] >gi|738550... 430 e-119 ref|NP_417902.1| IS1 protein InsB [Escherichia coli K12] >g... 380 e-104 ref|NP_863025.1| InsBcp3 [Escherichia coli] >gi|28629340|gb... 378 e-103 ref|NP_863037.1| InsBcp5 [Escherichia coli] >gi|28629352|gb... 378 e-103 ref|YP_311280.1| IS1 ORF [Shigella sonnei Ss046] >gi|743128... 377 e-103 emb|CAD09734.1| putative IS1 transposase [Salmonella enteri... 376 e-103 ref|ZP_00702652.1| COG1662: Transposase and inactivated der... 376 e-102 emb|CAE55757.1| hypothetical protein InsB [Escherichia coli... 375 e-102 gb|AAR05765.1| IS1 transposase [Salmonella typhimurium] >gi... 333 9e-090 gb|AAR05766.1| IS1 transposase [Salmonella typhimurium] >gi... 332 1e-089 >ref|YP_309947.1| IS1 ORF [Shigella sonnei Ss046] gb|AAZ87712.1| IS1 ORF [Shigella sonnei Ss046] Length = 194 Score = 430 bits (1013), Expect = e-119 Identities = 187/191 (97%), Positives = 187/191 (97%) Frame = +3
AV LHRFSTRYAPENH YGHEWRWMPGN HYGRWPQHDFTSLKKLRPQSVTSRIQPGSD Sbjct: 4 AVRLHRFSTRYAPENHLYGHEWRWMPGNCTHYGRWPQHDFTSLKKLRPQSVTSRIQPGSD 63
VIVCAEMDEQWGYVGAKSRQRWLFYAYDSLRKTVVAHVFGERTMATLGRLMSLLSPFDVV Sbjct: 64 VIVCAEMDEQWGYVGAKSRQRWLFYAYDSLRKTVVAHVFGERTMATLGRLMSLLSPFDVV 123
IWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLGRKSLSFSKSVELHDKV Sbjct: 124 IWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLGRKSLSFSKSVELHDKV 183
IGHYLNIKHYQ Sbjct: 184 IGHYLNIKHYQ 194 ------------------- gnl|ti|818410983 name:POAA-aab31b08.g1 mate_pair:818410646 (885 letters)
Score E
Sequences producing significant alignments: (bits) Value ref|YP_309947.1| IS1 ORF [Shigella sonnei Ss046] >gi|738550... 428 e-118 ref|NP_417902.1| IS1 protein InsB [Escherichia coli K12] >g... 380 e-104 ref|NP_863025.1| InsBcp3 [Escherichia coli] >gi|28629340|gb... 378 e-103 ----------------------------- gnl|ti|818410657 name:POAA-aab31c08.b1 mate_pair:818410994 (883 letters) Score E
Sequences producing significant alignments: (bits) Value gb|AAG41774.1| Cat [Promoter probe vector pPR9TT] 534 e-150 gb|ABB17069.1| chloramphenicol acetyl transferase [Moss gen... 511 e-143 dbj|BAA03718.1| PP-CAT [Photobacterium damselae subsp. pisc... 511 e-143 emb|CAA71024.1| chloramphenicol acetyltransferase [unidenti... 510 e-143 ------------ gnl|ti|818410994 name:POAA-aab31c08.g1 mate_pair:818410657 (903 letters)
Score E
Sequences producing significant alignments: (bits) Value pir||JQ1541 hypothetical 16.9K protein - Salmonella typhimu... 235 2e-060 ref|NP_758764.1| hypothetical protein pEA28_01 [Erwinia amy... 214 7e-054 gb|AAR02632.1| conserved hypothetical protein [Salmonella t... 211 3e-053 gb|AAB59125.1| 13.8 kd ORF [Plasmid ColE1] >gi|9507258|ref|... 209 1e-052 ref|YP_355421.1| hypothetical protein pCollet_06 [Escherich... 204 6e-051 sp|P03851|YPB3_ECOLI Hypothetical 9.4 kDa protein 160 1e-037 ref|NP_995570.1| hypothetical protein pPCP04 [Yersinia pest... 155 2e-036 ref|XP_731877.1| hypothetical protein PC403819.00.0 [Plasmo... 128 3e-028 ref|XP_668948.1| hypothetical protein PB400037.00.0 [Plasmo... 128 3e-028 gb|AAB59124.1| 10.2 kd ORF [Plasmid ColE1] >gi|9507257|ref|... 120 1e-025 >pir||JQ1541 hypothetical 16.9K protein - Salmonella typhimurium plasmid NTP16 Length = 149
Identities = 104/131 (79%), Positives = 110/131 (83%) Frame = -3
+R RR IGSA +TSITKIDA RGGETRQDY+DT F +E PSCAL FRPC LPDTCPP Sbjct: 11 QRRRRFSIGSAPLTSITKIDAQARGGETRQDYKDTRRFPLEAPSCALLFRPCRLPDTCPP 70
S+RE WRFLIAHAVGISVRCRSF PSWAVCTNPPFSPTAAPYPVTIV SPTR D +YRH Sbjct: 71 FSLREAWRFLIAHAVGISVRCRSFAPSWAVCTNPPFSPTAAPYPVTIVLSPTRXDTTYRH 130
QQPLVT L E Sbjct: 131 WQQPLVTDLEE 141 --------------------------- gnl|ti|818411017 name:POAA-aab31e07.g1 mate_pair:818410679 (839 letters)
Score E
Sequences producing significant alignments: (bits) Value emb|CAH36850.1| flavohemoprotein [Burkholderia pseudomallei... 65 3e-009 ref|ZP_00497012.1| COG1018: Flavodoxin reductases (ferredox... 65 3e-009 ref|ZP_00451964.1| COG1018: Flavodoxin reductases (ferredox... 65 3e-009 ref|ZP_00442255.1| COG1018: Flavodoxin reductases (ferredox... 65 3e-009 Yüklə 3,49 Mb. Dostları ilə paylaş:
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