Webmaster's Note: As Gerard says below, his Fourth Report came in two parts
Yüklə 3,49 Mb.
|
|
ref|ZP_00644398.1| COG1017: Hemoglobin-like flavoprotein [B... 65 3e-009 ref|ZP_00887996.1| COG1018: Flavodoxin reductases (ferredox... 65 3e-009 ref|ZP_00425530.1| Globin:Oxidoreductase FAD/NAD(P)-binding... 65 4e-009 ref|YP_368068.1| Hemoglobin-like flavoprotein [Burkholderia... 64 6e-009 ref|ZP_00480021.1| COG1018: Flavodoxin reductases (ferredox... 64 8e-009 ref|ZP_00491590.1| COG1018: Flavodoxin reductases (ferredox... 64 8e-009 >emb|CAH36850.1| flavohemoprotein [Burkholderia pseudomallei K96243] ref|YP_109434.1| flavohemoprotein [Burkholderia pseudomallei K96243] Length = 402
Identities = 32/41 (78%), Positives = 35/41 (85%) Frame = +3
LGALG AVS IAHKH SL IRP+ YPIVGE+LLAS+ EVLG Sbjct: 73 LGALGGAVSRIAHKHASLNIRPEHYPIVGENLLASIVEVLG 113 Score = 58.9 bits (141), Expect = 2e-007 Identities = 27/35 (77%), Positives = 30/35 (85%) Frame = +1 Query: 85 ELKNVFNLAHQETGAQPTALANAVFAYAANIDNLG 189 ELKNVFN HQ+TG+QP LA AV+AYAANIDNLG Sbjct: 40 ELKNVFNQTHQKTGSQPETLAKAVYAYAANIDNLG 74 --------------- gnl|ti|818410699 name:POAA-aab31g05.b1 mate_pair:818411038 (599 letters)
Score E
Sequences producing significant alignments: (bits) Value ref|XP_790864.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-As... 92 9e-018 gb|AAT68130.1| DEAD/H box 56 RNA helicase/noh61 [Danio reri... 90 4e-017 emb|CAG05399.1| unnamed protein product [Tetraodon nigrovir... 88 2e-016 gb|AAH68749.1| MGC81243 protein [Xenopus laevis] 86 1e-015 ref|NP_080814.1| nucleolar RNA helicase homolog [Mus muscul... 79 1e-013 ref|NP_001004211.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide ... 79 1e-013 dbj|BAC36145.1| unnamed protein product [Mus musculus] 79 1e-013 emb|CAG33494.1| DDX56 [Homo sapiens] 79 1e-013 ref|XP_641158.1| hypothetical protein DDB0205182 [Dictyoste... 79 1e-013 ref|XP_519072.1| PREDICTED: similar to Niemann-Pick C1-like... 79 1e-013 >ref|XP_790864.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 56, partial [Strongylocentrotus purpuratus] Length = 336
Identities = 47/91 (51%), Positives = 64/91 (70%) Frame = +2
IYQ LMSATL + + +K+L+LH P+TL L A + LP + LS+ VRC DK+L+ Sbjct: 187 IYQAILMSATLSEDVKTLKKLVLHNPITLKL---AESQLPEADRLSQYQVRCIEEDKYLL 243
Y +L+L+LI K +IFVNSID C+RLKL+L Sbjct: 244 IYTLLKLKLIRGKTIIFVNSIDRCYRLKLYL 274 Score = 60.8 bits (146), Expect = 3e-008 Identities = 27/47 (57%), Positives = 37/47 (78%) Frame = +1 Query: 418 LSEFTVRCAPADKFLVTYAMLRLQLIPTKVLIFVNSIDTCFRLKLFL 558 LS++ VRC DK+L+ Y +L+L+LI K +IFVNSID C+RLKL+L Sbjct: 228 LSQYQVRCIEEDKYLLIYTLLKLKLIRGKTIIFVNSIDRCYRLKLYL 274 >gb|AAT68130.1| DEAD/H box 56 RNA helicase/noh61 [Danio rerio] ref|NP_001003876.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 56 [Danio rerio] Length = 557 Score = 90.1 bits (222), Expect = 4e-017 Identities = 46/91 (50%), Positives = 64/91 (70%) Frame = +2
IYQ +LMSATL+D + +KEL+LH PVTL L+ + LP S+ L + +++C DKFL+ Sbjct: 187 IYQAFLMSATLNDDVQALKELVLHNPVTLKLQ---GSQLPDSSQLQQFSIKCEEEDKFLL 243
Y ML+L LI K L+FV+ +D +RLKLFL Sbjct: 244 IYTMLKLGLIQGKTLLFVSDVDRSYRLKLFL 274 Score = 56.2 bits (134), Expect = 7e-007 Identities = 26/52 (50%), Positives = 36/52 (69%) Frame = +1 Query: 403 PLSLALSEFTVRCAPADKFLVTYAMLRLQLIPTKVLIFVNSIDTCFRLKLFL 558 P S L +F+++C DKFL+ Y ML+L LI K L+FV+ +D +RLKLFL Sbjct: 223 PDSSQLQQFSIKCEEEDKFLLIYTMLKLGLIQGKTLLFVSDVDRSYRLKLFL 274 ------------------- gnl|ti|818410700 name:POAA-aab31g06.b1 mate_pair:818411039 (909 letters)
Score E
Sequences producing significant alignments: (bits) Value gb|AAI06491.1| Unknown (protein for IMAGE:7390062) [Xenopus... 64 6e-009 ref|NP_032563.2| alpha-methylacyl-CoA racemase [Mus musculu... 61 6e-008 gb|AAH15825.1| Amacr protein [Mus musculus] 61 6e-008 dbj|BAE35893.1| unnamed protein product [Mus musculus] 61 6e-008 sp|O09174|AMACR_MOUSE Alpha-methylacyl-CoA racemase (2-meth... 61 6e-008 gb|AAB72146.1| alpha-methylacyl-CoA racemase [Mus musculus] 61 6e-008 ref|ZP_00873338.1| Alpha-methylacyl-CoA racemase [Novosphin... 60 8e-008 gb|EAA12853.3| ENSANGP00000019280 [Anopheles gambiae str. P... 60 8e-008 ref|NP_001026619.1| alpha-methylacyl-CoA racemase [Gallus g... 60 8e-008 ref|YP_373400.1| L-carnitine dehydratase/bile acid-inducibl... 50 1e-004 >gb|AAI06491.1| Unknown (protein for IMAGE:7390062) [Xenopus laevis] Length = 257 Score = 64.3 bits (155), Expect = 6e-009 Identities = 31/49 (63%), Positives = 37/49 (75%) Frame = +1
+N+LD G+ FY YKT DGKF++VGA E QFYA LLK K K KKK+KK Sbjct: 209 ENMLDGGSPFYSTYKTADGKFMAVGAIETQFYAELLKGKCQKKKKKKKK 257 ----------- gnl|ti|818410705 name:POAA-aab31g12.b1 mate_pair:818411044 (889 letters)
Score E
Sequences producing significant alignments: (bits) Value dbj|BAE28771.1| unnamed protein product [Mus musculus] 74 9e-012 dbj|BAE29390.1| unnamed protein product [Mus musculus] 74 9e-012 gb|AAP92542.1| Ab1-133 [Rattus norvegicus] >gi|62646397|ref... 73 1e-011 ref|XP_589621.2| PREDICTED: similar to Protein KIAA1404 [Bo... 73 1e-011 ref|XP_534452.2| PREDICTED: similar to Protein KIAA1404 [Ca... 72 3e-011 ref|XP_695523.1| PREDICTED: similar to Protein KIAA1404, pa... 71 4e-011 ref|XP_417395.1| PREDICTED: similar to Protein KIAA1404 [Ga... 71 6e-011 emb|CAF96521.1| unnamed protein product [Tetraodon nigrovir... 69 3e-010 ref|XP_796885.1| PREDICTED: similar to Protein KIAA1404, pa... 62 3e-008 ref|XP_793245.1| PREDICTED: similar to Protein KIAA1404 [St... 61 6e-008 >dbj|BAE28771.1| unnamed protein product [Mus musculus] Length = 840 Score = 73.6 bits (179), Expect = 9e-012 Identities = 33/67 (49%), Positives = 49/67 (73%), Gaps = 2/67 (2%) Frame = +3
D+R+Y + RI MC+ +G++Y+V F+T + V W SKRL+YGSL+C+S D F+T L+ Sbjct: 400 DIRIYFDARIITPMCSASGIVYKVQFDTKPLKLVRWQNSKRLLYGSLVCMSKDNFETFLF 459
ATVS R+
Sbjct: 460 ATVSNRE 466 Score = 52.8 bits (125), Expect = 2e-005 Identities = 29/59 (49%), Positives = 40/59 (67%), Gaps = 3/59 (5%) Frame = +1 Query: 403 DVVDGKFDNAMHYLDTHFRLLREDCLQPLREGIQAYLPFSFNIY*EKKKK---LRRYFD 570 +++ GK+++ YLDTHFRLLRED ++PLREGI L SF +K+K +R YFD Sbjct: 349 NIISGKYESTAVYLDTHFRLLREDFVRPLREGILKLLQ-SFEDQCLRKRKFDDIRIYFD 406 ----------------- gnl|ti|818411050 name:POAA-aab31h06.g1 mate_pair:818410710 (883 letters)
Score E
Sequences producing significant alignments: (bits) Value dbj|BAB33421.1| putative senescence-associated protein [Pis... 69 2e-010 gb|AAS66225.1| LRRG00134 [Rattus norvegicus] 69 3e-010 ref|XP_577589.1| PREDICTED: similar to LRRG00134 [Rattus no... 64 9e-009 ref|XP_648070.1| conserved hypothetical protein [Entamoeba ... 56 1e-006 gb|AAR25995.1| putative senescence-associated protein [Pyru... 54 9e-006 ref|XP_665229.1| senescence-associated protein [Cryptospori... 47 7e-004 ref|XP_578859.1| PREDICTED: similar to hypothetical protein... 47 0.001 gb|EAA18798.1| hypothetical protein [Plasmodium yoelii yoelii] 46 0.002 ref|XP_724980.1| hypothetical protein PY04651 [Plasmodium y... 45 0.004 gb|EAA21327.1| putative senescence-associated protein [Plas... 44 0.010 >dbj|BAB33421.1| putative senescence-associated protein [Pisum sativum] Length = 282 Score = 69.3 bits (168), Expect = 2e-010 Identities = 32/36 (88%), Positives = 34/36 (94%) Frame = +1
VNNPTL EFCF+MIGRADIEGSKS+VAMNAW PQAS Sbjct: 79 VNNPTLGEFCFTMIGRADIEGSKSNVAMNAWLPQAS 114 Score = 39.7 bits (91), Expect = 0.14 Identities = 26/51 (50%), Positives = 27/51 (52%) Frame = +2 Query: 317 SAYTIGLNHWFLSY*SDLLSGHTAAPKRLLVVK*EGKTNLSHDGLNPAHVP 469 SA T N FLSY +LL H GKTNLSHDGL PAHVP Sbjct: 34 SAMTNCANQRFLSYYVELLLRHCHQ---------WGKTNLSHDGLIPAHVP 75 ------------ gnl|ti|818412443 name:POAA-aab32a05.b1 mate_pair:818412103 (898 letters)
Score E
Sequences producing significant alignments: (bits) Value gb|AAG41774.1| Cat [Promoter probe vector pPR9TT] 487 e-136 gb|ABB17069.1| chloramphenicol acetyl transferase [Moss gen... 469 e-131 -------- nl|ti|818412103 name:POAA-aab32a05.g1 mate_pair:818412443 (895 letters) Score E
Sequences producing significant alignments: (bits) Value pir||JQ1541 hypothetical 16.9K protein - Salmonella typhimu... 258 1e-067 ref|NP_758764.1| hypothetical protein pEA28_01 [Erwinia amy... 241 2e-062 ----- gnl|ti|818412116 name:POAA-aab32b08.g1 mate_pair:818412455 (892 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 2,903,629 sequences; 997,095,999 total letters
Score E
Sequences producing significant alignments: (bits) Value emb|CAH64774.1| disrupted transposase of Tn10 [uncultured b... 464 e-129 gb|AAG50897.1| bacterial IS-element [Arabidopsis thaliana] 464 e-129 ---------------------- gnl|ti|818412459 name:POAA-aab32b12.b1 mate_pair:818412120 (891 letters) Score E
Sequences producing significant alignments: (bits) Value gb|EAA13877.2| ENSANGP00000012578 [Anopheles gambiae str. P... 139 1e-031 gb|AAH61756.1| Ribophorin I [Rattus norvegicus] >gi|7189157... 138 2e-031 ref|NP_037199.1| ribophorin I [Rattus norvegicus] >gi|73629... 138 2e-031 ref|XP_848830.1| PREDICTED: similar to Dolichyl-diphosphool... 137 4e-031 gb|AAH16080.1| Ribophorin I [Mus musculus] >gi|74210115|dbj... 137 5e-031 gb|AAH85483.1| Rpn1 protein [Mus musculus] 137 5e-031 dbj|BAE30867.1| unnamed protein product [Mus musculus] 137 5e-031 ref|XP_516729.1| PREDICTED: ribophorin I [Pan troglodytes] 137 7e-031 ref|NP_999498.1| ribophorin I [Sus scrofa] >gi|9857227|emb|... 136 8e-031 emb|CAG33023.1| RPN1 [Homo sapiens] 135 1e-030 >gb|EAA13877.2| ENSANGP00000012578 [Anopheles gambiae str. PEST] ref|XP_319348.2| ENSANGP00000012578 [Anopheles gambiae str. PEST] Length = 333
Identities = 63/126 (50%), Positives = 90/126 (71%) Frame = -2
V+ SLKPFP+ IT + RQLV+Y+ N YFYSPYPT Q+TTV L+S ++E +++ P Sbjct: 1 VFTKSLKPFPSSITQSERQLVQYFGNVYFYSPYPTVTQKTTVHLSSRNVESYTQFK-PSA 59
S T+TYG Y ++ +H + +HFEN +PFLT+T++ + EVSHWGN+AVE+ +D+ H Sbjct: 60 QSDSTVTYGPYDNVAAFSHEPMTIHFENFTPFLTVTRLERTIEVSHWGNIAVEETIDIVH 119
GA LK
Sbjct: 120 SGATLK 125 --------------------- gnl|ti|818412461 name:POAA-aab32c02.b1 mate_pair:818412122 (911 letters)
Score E
Sequences producing significant alignments: (bits) Value ref|XP_795877.1| PREDICTED: similar to g-protein beta WD-40... 49 3e-004 ref|XP_795893.1| PREDICTED: similar to g-protein beta WD-40... 48 5e-004 ref|NP_704103.1| hypothetical protein [Plasmodium falciparu... 42 0.039 ref|XP_786095.1| PREDICTED: similar to CG10185-PA [Strongyl... 42 0.039 ref|XP_793081.1| PREDICTED: similar to CG10185-PA, partial ... 41 0.050 gb|AAF79815.1| T4O12.13 [Arabidopsis thaliana] 39 0.19 gb|EAL87031.1| hypothetical protein Afu7g04400 [Aspergillus... 39 0.25 gb|AAS77755.1| NADH dehydrogenase subunit 2 [Aleurodicus du... 39 0.33 >ref|XP_795877.1| PREDICTED: similar to g-protein beta WD-40 repeat (5F983) [Strongylocentrotus purpuratus] Length = 1711
Identities = 20/53 (37%), Positives = 36/53 (67%), Gaps = 1/53 (1%) Frame = -3
I +WY+ DTNA+PPVY+LQ I +P++ ++ + + NA +W ++FE + + Sbjct: 195 IRKWYVEDTNAIPPVYVLQPITVHLPNYYDSSDSQKQNATRQKWWEVFERMRK 247 ---------------------- gnl|ti|818412476 name:POAA-aab32d06.b1 mate_pair:818412138 (901 letters)
Score E
Sequences producing significant alignments: (bits) Value gb|AAG41774.1| Cat [Promoter probe vector pPR9TT] 492 e-138 gb|ABB17069.1| chloramphenicol acetyl transferase [Moss gen... 469 e-131 ----------------------- gnl|ti|818412138 name:POAA-aab32d06.g1 mate_pair:818412476 (889 letters) Score E
Sequences producing significant alignments: (bits) Value pir||JQ1541 hypothetical 16.9K protein - Salmonella typhimu... 256 1e-066 gb|AAR02632.1| conserved hypothetical protein [Salmonella t... 231 2e-059 ref|NP_758764.1| hypothetical protein pEA28_01 [Erwinia amy... 226 6e-058 gb|AAB59125.1| 13.8 kd ORF [Plasmid ColE1] >gi|9507258|ref|... 224 4e-057 ref|YP_355421.1| hypothetical protein pCollet_06 [Escherich... 222 2e-056 sp|P03851|YPB3_ECOLI Hypothetical 9.4 kDa protein 179 1e-043 ref|NP_995570.1| hypothetical protein pPCP04 [Yersinia pest... 168 2e-040 ref|XP_731877.1| hypothetical protein PC403819.00.0 [Plasmo... 145 2e-033 ref|XP_668948.1| hypothetical protein PB400037.00.0 [Plasmo... 145 2e-033 gb|AAB59124.1| 10.2 kd ORF [Plasmid ColE1] >gi|9507257|ref|... 122 1e-026 >pir||JQ1541 hypothetical 16.9K protein - Salmonella typhimurium plasmid NTP16 Length = 149 Score = 256 bits (653), Expect = 1e-066 Identities = 121/126 (96%), Positives = 121/126 (96%) Frame = -1
F IGSAPLTSITKIDAQ RGGETRQDYKDTRRFPLEAPSCALLFRPCRLPDTCPPFSLRE Sbjct: 16 FSIGSAPLTSITKIDAQARGGETRQDYKDTRRFPLEAPSCALLFRPCRLPDTCPPFSLRE 75
AWRFLIAHAVGISVRCRSFAPSWAVCTNPPFSPTAAPYPVTIVLSPTR DTTYRHWQQPL Sbjct: 76 AWRFLIAHAVGISVRCRSFAPSWAVCTNPPFSPTAAPYPVTIVLSPTRXDTTYRHWQQPL 135
VT L E
Sbjct: 136 VTDLEE 141 ---------------------- gnl|ti|818412483 name:POAA-aab32e02.b1 mate_pair:818412146 (920 letters)
Score E
Sequences producing significant alignments: (bits) Value ref|NP_104893.1| metalloprotease (cell division protein) Ft... 49 3e-004 ref|XP_415834.1| PREDICTED: similar to hypothetical protein... 48 4e-004 gb|AAN30591.1| cell division protein FtsH [Brucella suis 13... 47 7e-004 ref|YP_222356.1| FtsH, cell division protein FtsH [Brucella... 47 7e-004 ref|XP_629167.1| hypothetical protein DDB0219849 [Dictyoste... 47 7e-004 gb|AAL51524.1| CELL DIVISION PROTEIN FTSH [Brucella meliten... 47 7e-004 ref|XP_800514.1| PREDICTED: hypothetical protein XP_795421,... 47 0.001 ref|XP_798496.1| PREDICTED: similar to G2/mitotic-specific ... 47 0.001 emb|CAC47314.1| PROBABLE METALLOPROTEASE TRANSMEMBRANE PROT... 46 0.002 gb|AAT68129.1| U1 small ribonucleoprotein 70kd [Danio rerio... 42 0.030 >ref|NP_104893.1| metalloprotease (cell division protein) FtsH [Mesorhizobium loti MAFF303099] dbj|BAB50679.1| metalloprotease (cell division protein); FtsH [Mesorhizobium loti MAFF303099] Length = 642
Identities = 22/36 (61%), Positives = 27/36 (75%) Frame = +1
F +G+ TSGASSD+ QA+KLA MV WGFSDK+ Sbjct: 483 FKFGKENITSGASSDIEQATKLARAMVTRWGFSDKL 518 ----------- gnl|ti|818412502 name:POAA-aab32f10.b1 mate_pair:818412163 (563 letters)
Score E
Sequences producing significant alignments: (bits) Value ref|XP_628882.1| hypothetical protein DDB0192205 [Dictyoste... 55 1e-006 emb|CAH70596.1| OTTHUMP00000018802 [Homo sapiens] 54 3e-006 ref|XP_509571.1| PREDICTED: similar to RIKEN cDNA 5033406L1... 54 3e-006 ref|NP_694983.2| DHHC-containing protein 20 [Homo sapiens] 54 3e-006 ref|XP_675692.1| conserved hypothetical protein [Plasmodium... 53 7e-006 gb|AAH78093.1| Zdhhc2-prov protein [Xenopus laevis] 52 9e-006 ref|NP_001017129.1| hypothetical protein LOC549883 [Xenopus... 52 9e-006 gb|AAI06252.1| Unknown (protein for MGC:130694) [Xenopus la... 52 9e-006 gb|AAH70607.1| MGC81318 protein [Xenopus laevis] 52 1e-005 ref|XP_785286.1| PREDICTED: similar to zinc finger, DHHC do... 51 2e-005 >ref|XP_628882.1| hypothetical protein DDB0192205 [Dictyostelium discoideum] gb|EAL60464.1| hypothetical protein DDB0192205 [Dictyostelium discoideum] Length = 319
Identities = 25/60 (41%), Positives = 39/60 (65%) Frame = -1
WV+NCVG NNH+YF+LFL+YL + C Y+ ++S+ + + S YI F + I+L+ Sbjct: 165 WVNNCVGANNHRYFMLFLVYLWISCVYVCILSYPHVF---NSESGYIPFSMLMSFVITLT 221
gnl|ti|818412510 name:POAA-aab32g06.b1 mate_pair:818412170 (846 letters) Score E
Sequences producing significant alignments: (bits) Value dbj|BAC29164.1| unnamed protein product [Mus musculus] 53 1e-005 ref|NP_035864.2| yolk sac gene 2 [Mus musculus] >gi|7418897... 53 1e-005 gb|AAH07136.1| Yolk sac gene 2 [Mus musculus] 53 1e-005 dbj|BAE37942.1| unnamed protein product [Mus musculus] 53 1e-005 dbj|BAC31534.1| unnamed protein product [Mus musculus] 53 1e-005 dbj|BAC26026.1| unnamed protein product [Mus musculus] 53 1e-005 ref|XP_343374.2| PREDICTED: similar to sialic-acid O-acetyl... 53 1e-005 sp|P70665|YSG2_MOUSE Sialate O-acetylesterase precursor (Si... 53 1e-005 gb|AAD55976.1| cytosolic sialic acid 9-O-acetylesterase [Mu... 53 1e-005 ref|XP_789419.1| PREDICTED: similar to cytosolic sialic aci... 52 2e-005 >dbj|BAC29164.1| unnamed protein product [Mus musculus] Length = 453 Score = 53.1 bits (126), Expect = 1e-005 Identities = 21/31 (67%), Positives = 25/31 (80%) Frame = +3
NF Y SAVCW GRYLY+ L+ P+GLVSS+W Sbjct: 100 NFTYMSAVCWLFGRYLYDTLQYPIGLVSSSW 130 -------------- gnl|ti|818412173 name:POAA-aab32g09.g1 (894 letters) Score E
Sequences producing significant alignments: (bits) Value gb|AAP68991.1| 4-coumarate:coenzyme A ligase 2 [Salvia milt... 65 4e-009 ref|NP_176482.1| 4-coumarate-CoA ligase [Arabidopsis thalia... 65 4e-009 ref|XP_471766.1| OSJNBa0033H08.6 [Oryza sativa (japonica cu... 64 5e-009 gb|AAC97600.1| 4-coumarate:CoA ligase isoenzyme 2 [Glycine ... 64 7e-009 gb|AAL56850.1| 4-coumarate:CoA ligase [Populus tomentosa] 64 7e-009 gb|AAL35216.1| 4-coumarate:CoA ligase [Amorpha fruticosa] 64 7e-009 gb|AAL02145.1| 4-coumarate:CoA ligase [Populus tomentosa] 64 7e-009 gb|AAL02144.1| 4-coumarate:CoA ligase [Populus tomentosa] 64 7e-009 gb|AAY84731.1| 4-coumarate:CoA ligase [Populus tomentosa] 64 7e-009 sp|O24146|4CL2_TOBAC 4-coumarate--CoA ligase 2 (4CL 2) (4-c... 64 7e-009 >gb|AAP68991.1| 4-coumarate:coenzyme A ligase 2 [Salvia miltiorrhiza] Length = 540 Score = 64.7 bits (156), Expect = 4e-009 Identities = 30/38 (78%), Positives = 35/38 (92%) Frame = +2
GDI ++DA+ LFIVDRLKE+IKY+GFQVAPAEIEALL Sbjct: 419 GDIGFIDADDELFIVDRLKEIIKYKGFQVAPAEIEALL 456 ------------------- gnl|ti|818411850 name:POAA-aab33a11.g1 mate_pair:818412195 (899 letters)
Score E
Sequences producing significant alignments: (bits) Value dbj|BAB82452.1| CYP1 [Vigna radiata] 98 4e-019 sp|P21568|CYPH_LYCES Peptidyl-prolyl cis-trans isomerase (P... 97 6e-019 emb|CAA52414.1| cyclophilin [Phaseolus vulgaris] 97 1e-018 gb|ABB29940.1| cyclophilin-like [Solanum tuberosum] >gi|455... 96 1e-018 emb|CAC80550.1| cyclophilin [Ricinus communis] 94 6e-018 dbj|BAA25755.1| vcCyP [Vicia faba] 94 6e-018 gb|AAX94775.1| cyclophilin [Cucumis sativus] 94 8e-018 emb|CAA21760.1| Hypothetical protein Y75B12B.2 [Caenorhabdi... 92 2e-017 emb|CAA69622.1| cyclophylin [Digitalis lanata] 91 7e-017 gb|AAL51087.1| cyclophilin [Glycine max] 90 9e-017 >dbj|BAB82452.1| CYP1 [Vigna radiata] Length = 172 Score = 97.8 bits (242), Expect = 4e-019 Identities = 53/107 (49%), Positives = 60/107 (56%) Frame = -2
NPKVFFD+ IG P G++VFE LF D+TPRTAENFRALCTG Sbjct: 3 NPKVFFDMTIGGQPAGKIVFE--------------------LFADTTPRTAENFRALCTG 42
EKG+G+ GKPLH+KGS FHRVIP FM QG Sbjct: 43 ------------------EKGVGRSGKPLHYKGSIFHRVIPNFMCQG 71 --------------- gnl|ti|818412211 name:POAA-aab33c04.b1 mate_pair:818411867 (915 letters)
Score E
Sequences producing significant alignments: (bits) Value gb|ABB17069.1| chloramphenicol acetyl transferase [Moss gen... 374 e-102 gb|AAC53603.1| chloramphenicol acetyltransferase 374 e-102 ------------------ gnl|ti|818411867 name:POAA-aab33c04.g1 mate_pair:818412211 (902 letters) Score E
Sequences producing significant alignments: (bits) Value sp|P03851|YPB3_ECOLI Hypothetical 9.4 kDa protein 179 2e-043 pir||JQ1541 hypothetical 16.9K protein - Salmonella typhimu... 174 3e-042 gb|AAR02632.1| conserved hypothetical protein [Salmonella t... 148 2e-034 ref|NP_758764.1| hypothetical protein pEA28_01 [Erwinia amy... 144 5e-033 gb|AAB59125.1| 13.8 kd ORF [Plasmid ColE1] >gi|9507258|ref|... 144 5e-033 ref|YP_355421.1| hypothetical protein pCollet_06 [Escherich... 139 1e-031 ref|NP_995570.1| hypothetical protein pPCP04 [Yersinia pest... 138 2e-031 gb|AAB59124.1| 10.2 kd ORF [Plasmid ColE1] >gi|9507257|ref|... 122 1e-026 ref|XP_731877.1| hypothetical protein PC403819.00.0 [Plasmo... 98 3e-019 ref|XP_668948.1| hypothetical protein PB400037.00.0 [Plasmo... 98 3e-019 >sp|P03851|YPB3_ECOLI Hypothetical 9.4 kDa protein Length = 84 Score = 179 bits (453), Expect = 2e-043 Identities = 83/84 (98%), Positives = 84/84 (100%) Yüklə 3,49 Mb. Dostları ilə paylaş:
|