Webmaster's Note: As Gerard says below, his Fourth Report came in two parts
Yüklə 3,49 Mb.
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ref|XP_711155.1| putative SPB4-like DEAD box RNA helicase [... 45 0.004 emb|CAG05307.1| unnamed protein product [Tetraodon nigrovir... 45 0.004 emb|CAG05302.1| unnamed protein product [Tetraodon nigrovir... 45 0.004 ref|XP_635318.1| hypothetical protein DDB0183998 [Dictyoste... 44 0.008 >ref|NP_177284.1| ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding [Arabidopsis thaliana] gb|AAG51890.1| putative DEAD/DEAH box helicase; 70712-72602 [Arabidopsis thaliana] Length = 465 Score = 53.5 bits (127), Expect = 1e-005 Identities = 26/53 (49%), Positives = 35/53 (66%) Frame = -2
KC D N +EGA +++GTPGR+ M ME+ +F+ LEIL+LDEADR Sbjct: 120 KCREVEADMNTLEEEGANLLIGTPGRLSDMMKRMEF-LDFRNLEILILDEADR 171 ------------ nl|ti|818412414 name:POAA-aab62f10.b1 mate_pair:818412075 (904 letters)
Score E
Sequences producing significant alignments: (bits) Value emb|CAJ00344.1| chloramphenicol acetyltransferase [Aeromona... 232 1e-059 ----------- gnl|ti|818412075 name:POAA-aab62f10.g1 mate_pair:818412414 (895 letters)
Score E
Sequences producing significant alignments: (bits) Value gb|AAB59124.1| 10.2 kd ORF [Plasmid ColE1] >gi|9507257|ref|... 141 3e-032 ---------- gnl|ti|818412077 name:POAA-aab62f12.g1 mate_pair:818412416 (908 letters)
Score E
Sequences producing significant alignments: (bits) Value emb|CAE73829.1| Hypothetical protein CBG21394 [Caenorhabdit... 79 2e-013 emb|CAE62908.1| Hypothetical protein CBG07099 [Caenorhabdit... 72 2e-011 emb|CAE63441.1| Hypothetical protein CBG07892 [Caenorhabdit... 67 9e-010 emb|CAE62907.1| Hypothetical protein CBG07098 [Caenorhabdit... 67 1e-009 emb|CAE62909.1| Hypothetical protein CBG07101 [Caenorhabdit... 60 1e-007 emb|CAE70527.1| Hypothetical protein CBG17156 [Caenorhabdit... 58 4e-007 emb|CAA33190.1| unnamed protein product [Crithidia fascicul... 55 4e-006 gb|AAA31881.1| A 'c' was inserted after nt 369 (=nt 10459 i... 53 1e-005 emb|CAE71792.1| Hypothetical protein CBG18801 [Caenorhabdit... 53 1e-005 emb|CAE72901.1| Hypothetical protein CBG20215 [Caenorhabdit... 52 3e-005 >emb|CAE73829.1| Hypothetical protein CBG21394 [Caenorhabditis briggsae] Length = 1108 Score = 79.0 bits (193), Expect = 2e-013 Identities = 54/137 (39%), Positives = 77/137 (56%), Gaps = 14/137 (10%) Frame = -2
+K KNPK K P+IQ+SKNP+I K IQ+SKNP+IQ+SKNP+IQ+SKNP+IQ Sbjct: 293 QKSKNPKIQESKNPRIQESKNPRIQKSKNPRIQESKNPRIQESKNPRIQESKNPRIQESK 352
IQ KNP+ +K+++ ++ N K K +I K+ N +SK + + Sbjct: 353 NARIQESKNPRIQKSKNPRIQESKNPKIQKSENPRIQKSKNPRIQESKNPRIQESKNPRI 412
SK + KNP
Sbjct: 413 QESQESKNPRIQESKNP 429 --------------- gnl|ti|818412092 name:POAA-aab62h05.g1 mate_pair:818412432 (891 letters)
Score E
Sequences producing significant alignments: (bits) Value ref|XP_762133.1| hypothetical protein UM05986.1 [Ustilago m... 89 2e-016 gb|AAW45017.1| proteasome subunit alpha type 5, putative [C... 87 6e-016 ref|XP_647379.1| hypothetical protein DDB0216562 [Dictyoste... 87 8e-016 ref|XP_624341.1| PREDICTED: similar to proteasome subunit, ... 87 8e-016 ref|XP_663476.1| hypothetical protein AN5872.2 [Aspergillus... 86 2e-015 ref|XP_782337.1| PREDICTED: similar to Proteasome subunit a... 85 4e-015 ref|XP_367205.1| hypothetical protein MG07130.4 [Magnaporth... 84 5e-015 gb|EAL93438.1| proteasome component Pup2, putative [Aspergi... 84 9e-015 gb|AAP06025.1| similar to NM_011967 proteasome (prosome, ma... 84 9e-015 gb|EAA74723.1| conserved hypothetical protein [Gibberella z... 84 9e-015 >ref|XP_762133.1| hypothetical protein UM05986.1 [Ustilago maydis 521] gb|EAK86958.1| hypothetical protein UM05986.1 [Ustilago maydis 521] Length = 250
Identities = 42/59 (71%), Positives = 49/59 (83%) Frame = +1
ES + + SRPFGVALL+AGIDE GPQL+H DPSGTF+++DAKAIG GSEGAQT LQ Sbjct: 125 ESTAGDEAMMSRPFGVALLIAGIDEKGPQLFHADPSGTFVRYDAKAIGSGSEGAQTELQ 183 -------------------- gnl|ti|818412433 name:POAA-aab62h06.b1 mate_pair:818412093 (924 letters)
Score E
Sequences producing significant alignments: (bits) Value gb|AAL02033.1| chloramphenicol acetyl transferase [Template... 85 4e-015 --------- gnl|ti|818412098 name:POAA-aab62h11.g1 mate_pair:818412438 (891 letters)
Score E
Sequences producing significant alignments: (bits) Value gb|AAF59456.3| Hypothetical protein Y37E11AM.1 [Caenorhabdi... 56 1e-006 emb|CAE63756.1| Hypothetical protein CBG08291 [Caenorhabdit... 56 1e-006 ref|XP_428039.1| PREDICTED: similar to anaphylatoxin C5a re... 53 2e-005 ref|XP_791731.1| PREDICTED: similar to DEAH (Asp-Glu-Ala-Hi... 50 1e-004 emb|CAG09044.1| unnamed protein product [Tetraodon nigrovir... 50 1e-004 gb|EAA01125.2| ENSANGP00000016870 [Anopheles gambiae str. P... 49 2e-004 gb|AAF48954.2| CG32533-PA [Drosophila melanogaster] >gi|161... 49 2e-004 ref|XP_541537.2| PREDICTED: similar to DEAH (Asp-Glu-Ala-Hi... 49 2e-004 ref|XP_397034.2| PREDICTED: similar to ENSANGP00000016870 [... 49 2e-004 gb|EAL38616.1| ENSANGP00000029361 [Anopheles gambiae str. P... 49 2e-004 >gb|AAF59456.3| Hypothetical protein Y37E11AM.1 [Caenorhabditis elegans] ref|NP_500405.2| Y37E11AM.1 [Caenorhabditis elegans] Length = 1037
Identities = 27/36 (75%), Positives = 30/36 (83%) Frame = -1
KSTQ+ QY LKAG+T +ACTQPRRIA AL RRVAY Sbjct: 121 KSTQVPQYLLKAGFTGVACTQPRRIACTALARRVAY 156 Score = 39.7 bits (91), Expect = 0.14 Identities = 17/32 (53%), Positives = 23/32 (71%) Frame = -2 Query: 539 QVNLPIFKFKNDIITALQTNNVIVVAGDTGCG 444 Q LPI + +I+ L+TN V++VAGDTGCG Sbjct: 89 QKELPIAERAGEIVELLKTNQVLIVAGDTGCG 120 ------------------- gnl|ti|820217484 name:POAA-aab63a02.b1 mate_pair:818413956 (909 letters)
Score E
Sequences producing significant alignments: (bits) Value gb|AAI08642.1| Unknown (protein for MGC:131328) [Xenopus la... 58 4e-007 ref|NP_001011220.1| hypothetical protein LOC496655 [Xenopus... 58 5e-007 ref|YP_200400.1| copper homeostasis protein [Xanthomonas or... 57 7e-007 ref|YP_364952.1| Copper homeostasis protein [Xanthomonas ca... 57 7e-007 ref|NP_643400.1| copper homeostasis protein [Xanthomonas ax... 57 7e-007 sp|Q8PI07|CUTC_XANAC Copper homeostasis protein cutC 57 7e-007 ref|YP_242285.1| copper homeostasis protein [Xanthomonas ca... 57 9e-007 ref|ZP_00683322.1| CutC [Xylella fastidiosa Ann-1] >gi|7172... 56 2e-006 ref|ZP_00681371.1| CutC [Xylella fastidiosa Ann-1] >gi|7173... 56 2e-006 pdb|1X8C|B Chain B, Crystal Structure Of The Semet-Derivati... 56 2e-006 >gb|AAI08642.1| Unknown (protein for MGC:131328) [Xenopus laevis] Length = 252 Score = 58.2 bits (139), Expect = 4e-007 Identities = 23/47 (48%), Positives = 36/47 (76%) Frame = +2
G+TPSVG++Q V+ ++IP+FV+IRPR GDF Y + E +++K + L Sbjct: 39 GITPSVGLLQVVKQYVQIPIFVMIRPRGGDFLYSDREVEVMKADIRL 85 ---------------- gnl|ti|820217485 name:POAA-aab63a03.b1 mate_pair:818413957 (900 letters)
Score E
Sequences producing significant alignments: (bits) Value ref|XP_646632.1| putative GATA-binding transcription factor... 51 6e-005 ref|XP_640565.1| putative GATA-binding transcription factor... 49 2e-004 ref|XP_637400.1| putative GATA-binding transcription factor... 49 3e-004 ref|XP_642534.1| putative GATA-binding transcription factor... 46 0.002 ref|XP_761920.1| hypothetical protein UM05773.1 [Ustilago m... 45 0.003 ref|XP_646970.1| putative GATA-binding transcription factor... 45 0.004 ref|XP_642533.1| putative GATA-binding transcription factor... 44 0.010 ref|XP_636120.1| hypothetical protein DDB0220608 [Dictyoste... 44 0.010 emb|CAG89885.1| unnamed protein product [Debaryomyces hanse... 42 0.022 dbj|BAD83848.1| GATA zinc finger protein [Dictyostelium dis... 42 0.029 >ref|XP_646632.1| putative GATA-binding transcription factor [Dictyostelium discoideum] gb|EAL72728.1| putative GATA-binding transcription factor [Dictyostelium discoideum] Length = 1006
Identities = 19/40 (47%), Positives = 24/40 (60%) Frame = +3
P P +H+R+ +I YC +CGT TPEWRRGP G Sbjct: 820 PHPPVKKTHRRRPANIDKSTLYCHNCGTKNTPEWRRGPSG 859 ------------ gnl|ti|820217510 name:POAA-aab63c07.b1 mate_pair:818413983 (916 letters)
Score E
Sequences producing significant alignments: (bits) Value dbj|BAB62718.1| plerocercoid growth factor/cysteine proteas... 82 2e-014 gb|AAR12010.1| cathepsin L-like proteinase [Triatoma infest... 82 3e-014 ref|XP_801784.1| PREDICTED: similar to cathepsin L, a isofo... 81 6e-014 ref|XP_779916.1| PREDICTED: similar to cathepsin L, a isofo... 81 6e-014 emb|CAE47501.1| cathepsin L-like proteinase [Diabrotica vir... 80 1e-013 gb|AAL34984.1| cathepsine L-like cysteine protease [Rhodniu... 80 1e-013 emb|CAE53701.1| cathepsin S precursor [Platichthys flesus] 79 2e-013 emb|CAE53700.1| cysteine proteinase precursor [Platichthys ... 79 2e-013 gb|AAB17051.1| cysteine protease 79 3e-013 dbj|BAA09821.1| cysteine proteinase [Spirometra erinaceieur... 79 3e-013 >dbj|BAB62718.1| plerocercoid growth factor/cysteine protease [Spirometra erinaceieuropaei] dbj|BAB62799.1| plerocercoid growth factor-2/cysteine protease [Spirometra erinaceieuropaei] Length = 336 Score = 82.4 bits (202), Expect = 2e-014 Identities = 33/46 (71%), Positives = 40/46 (86%) Frame = +2
G ENG+ YWL KNS+G +WGEGGY+KMARN+NN CGIA+MASYP + Sbjct: 291 GAENGEAYWLVKNSWGSSWGEGGYVKMARNRNNMCGIASMASYPTV 336 ------------------- gnl|ti|820217518 name:POAA-aab63d04.b1 mate_pair:818413991 (842 letters)
Score E
Sequences producing significant alignments: (bits) Value ref|YP_309947.1| IS1 ORF [Shigella sonnei Ss046] >gi|738550... 387 e-106 ref|NP_417902.1| IS1 protein InsB [Escherichia coli K12] >g... 345 1e-093 ref|NP_863025.1| InsBcp3 [Escherichia coli] >gi|28629340|gb... 344 2e-093 ref|NP_863037.1| InsBcp5 [Escherichia coli] >gi|28629352|gb... 343 4e-093 emb|CAD09734.1| putative IS1 transposase [Salmonella enteri... 342 7e-093 ref|YP_311280.1| IS1 ORF [Shigella sonnei Ss046] >gi|743128... 342 9e-093 ref|ZP_00717021.1| COG1662: Transposase and inactivated der... 342 1e-092 ref|YP_313456.1| IS1 ORF2 [Shigella sonnei Ss046] >gi|74314... 341 2e-092 ref|ZP_00706818.1| COG1662: Transposase and inactivated der... 341 2e-092 ref|ZP_00702652.1| COG1662: Transposase and inactivated der... 341 2e-092 >ref|YP_309947.1| IS1 ORF [Shigella sonnei Ss046] gb|AAZ87712.1| IS1 ORF [Shigella sonnei Ss046] Length = 194 Score = 387 bits (995), Expect = e-106 Identities = 184/190 (96%), Positives = 186/190 (97%) Frame = +1
AV LHRFSTRYAPE++ YGHEWRWMPGN HYGRWPQHDFTSLKKLRPQSVTSRIQPGSD Sbjct: 4 AVRLHRFSTRYAPENHLYGHEWRWMPGNCTHYGRWPQHDFTSLKKLRPQSVTSRIQPGSD 63
VIVCAEMDEQWGYVGAKSRQRWLFYAYDSLRKTVVAHVFGERTMATLGRLMSLLSPFDVV Sbjct: 64 VIVCAEMDEQWGYVGAKSRQRWLFYAYDSLRKTVVAHVFGERTMATLGRLMSLLSPFDVV 123
IWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLGRKSLSFSKSVELHDKV Sbjct: 124 IWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLGRKSLSFSKSVELHDKV 183
IGHYLNIKHY Sbjct: 184 IGHYLNIKHY 193 ------------- gnl|ti|818413991 name:POAA-aab63d04.g1 mate_pair:820217518 (800 letters)
Score E
Sequences producing significant alignments: (bits) Value ref|YP_309947.1| IS1 ORF [Shigella sonnei Ss046] >gi|738550... 342 7e-093 ref|NP_863025.1| InsBcp3 [Escherichia coli] >gi|28629340|gb... 330 4e-089 ref|YP_313456.1| IS1 ORF2 [Shigella sonnei Ss046] >gi|74314... 330 4e-089 ref|NP_417902.1| IS1 protein InsB [Escherichia coli K12] >g... 330 4e-089 ref|ZP_00733597.1| COG1662: Transposase and inactivated der... 330 4e-089 ref|YP_311280.1| IS1 ORF [Shigella sonnei Ss046] >gi|743128... 330 4e-089 ref|YP_312749.1| IS1 ORF [Shigella sonnei Ss046] >gi|743129... 328 1e-088 ref|YP_312350.1| IS1 ORF [Shigella sonnei Ss046] >gi|743122... 328 1e-088 ref|YP_312038.1| IS1 ORF [Shigella sonnei Ss046] >gi|738570... 328 1e-088 ref|YP_309727.1| IS1 ORF [Shigella sonnei Ss046] >gi|738547... 328 1e-088 >ref|YP_309947.1| IS1 ORF [Shigella sonnei Ss046] gb|AAZ87712.1| IS1 ORF [Shigella sonnei Ss046] Length = 194 Score = 342 bits (878), Expect = 7e-093 Identities = 171/187 (91%), Positives = 171/187 (91%) Frame = -1
FSTR PENH YG EW GRWPQHDFTSLKKLRPQSVTSRIQPGSDVIVC Sbjct: 10 FSTRYA-PENHLYGHEWRW-MPGNCTHYGRWPQHDFTSLKKLRPQSVTSRIQPGSDVIVC 67
AEMDEQWGYVGAKSRQRWLFYAYDSLRKTVVAHVFGERTMATLGRLMSLLSPFDVVIWMT Sbjct: 68 AEMDEQWGYVGAKSRQRWLFYAYDSLRKTVVAHVFGERTMATLGRLMSLLSPFDVVIWMT 127
DGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLGRKSLSFSKSVELHDKVIGHY Sbjct: 128 DGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLGRKSLSFSKSVELHDKVIGHY 187
LNIKHYQ
Sbjct: 188 LNIKHYQ 194 ------------ gnl|ti|820217523 name:POAA-aab63d09.b1 mate_pair:818413996 (905 letters)
Score E
Sequences producing significant alignments: (bits) Value ref|YP_309947.1| IS1 ORF [Shigella sonnei Ss046] >gi|738550... 392 e-108 ------------ gnl|ti|818413996 name:POAA-aab63d09.g1 mate_pair:820217523 (902 letters) Score E
Sequences producing significant alignments: (bits) Value ref|YP_309947.1| IS1 ORF [Shigella sonnei Ss046] >gi|738550... 394 e-108 ------------ gnl|ti|818414007 name:POAA-aab63e08.g1 mate_pair:820217534 (921 letters) Score E
Sequences producing significant alignments: (bits) Value ref|XP_779282.1| GLP_587_50044_49331 [Giardia lamblia ATCC ... 61 6e-008 ref|XP_791188.1| PREDICTED: similar to Parkin coregulated g... 60 1e-007 emb|CAJ05572.1| hypothetical protein, conserved [Leishmania... 58 4e-007 gb|EAN99013.1| hypothetical protein, conserved [Trypanosoma... 58 5e-007 gb|AAX80688.1| hypothetical protein, conserved [Trypanosoma... 57 9e-007 ref|XP_625146.1| PREDICTED: similar to Zgc:101786 [Apis mel... 57 9e-007 gb|AAH85440.1| Zgc:101786 [Danio rerio] >gi|55925315|ref|NP... 56 2e-006 ref|XP_419614.1| PREDICTED: similar to PACRG [Gallus gallus] 55 3e-006 ref|XP_784874.1| PREDICTED: similar to Parkin coregulated g... 55 5e-006 dbj|BAE22559.1| unnamed protein product [Mus musculus] 55 5e-006 >ref|XP_779282.1| GLP_587_50044_49331 [Giardia lamblia ATCC 50803] gb|EAA42471.1| GLP_587_50044_49331 [Giardia lamblia ATCC 50803] Length = 237 Score = 60.8 bits (146), Expect = 6e-008 Identities = 27/49 (55%), Positives = 37/49 (75%) Frame = +2
L+E D PY FLAREGV+N+L+ G SK+LPVIPQLI+P+ + + P + Sbjct: 98 LREKDHPYAFLAREGVTNLLEHGGSKVLPVIPQLILPLHAALETRDPEV 146 Score = 50.4 bits (119), Expect = 9e-005 Identities = 21/32 (65%), Positives = 25/32 (78%) Frame = +3 Query: 57 NVVEFAGSNKIQWKVEIEKLDYHHYLPIFFDG 152 +V A NKI WK EIE+LD+HHYLPIFF+G Sbjct: 66 SVEHTASGNKIIWKAEIEQLDFHHYLPIFFEG 97 -------------------- gnl|ti|820217540 name:POAA-aab63f02.b1 mate_pair:818414011 (938 letters)
Score E
Sequences producing significant alignments: (bits) Value ref|YP_283687.1| Response regulator receiver:ATP-binding re... 60 1e-007 ref|ZP_00150184.1| COG0642: Signal transduction histidine k... 60 1e-007 ref|ZP_00585281.1| PAS [Shewanella amazonensis SB2B] >gi|68... 57 7e-007 ref|NP_716490.1| sensory box histidine kinase/response regu... 55 4e-006 dbj|BAB75460.1| two-component hybrid sensor and regulator [... 55 4e-006 ref|ZP_00855004.1| PAS [Shewanella sp. MR-7] >gi|78510268|g... 55 4e-006 ref|ZP_00849349.1| PAS [Shewanella sp. ANA-3] >gi|78507503|... 55 4e-006 ref|YP_322082.1| Multi-sensor Hybrid Histidine Kinase [Anab... 55 4e-006 gb|EAP46058.1| PAS [Shewanella sp. MR-4] 55 4e-006 ref|ZP_00583064.1| PAS [Shewanella baltica OS155] >gi|68518... 55 5e-006 >ref|YP_283687.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal [Dechloromonas aromatica RCB] gb|AAZ45217.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal [Dechloromonas aromatica RCB] Length = 835 Score = 60.1 bits (144), Expect = 1e-007 Identities = 28/45 (62%), Positives = 35/45 (77%) Frame = +3
D TA +EF +SDSG+G+ V +Q LFKPF QAD+STTR+ GGTG Sbjct: 598 DRGTALLEFSVSDSGIGIPVDKQSLLFKPFSQADSSTTREYGGTG 642 ------------ gnl|ti|818414024 name:POAA-aab63g05.g1 mate_pair:820217554 (901 letters)
Score E
Sequences producing significant alignments: (bits) Value gb|AAK13589.1| rRNA intron-encoded homing endonuclease [Ory... 52 4e-005 ref|XP_525925.1| PREDICTED: similar to rRNA intron-encoded ... 50 1e-004 gb|AAL31950.1| CDH1-D [Gallus gallus] 50 1e-004 emb|CAH00948.1| unnamed protein product [Kluyveromyces lact... 42 0.022 emb|CAH00942.1| unnamed protein product [Kluyveromyces lact... 42 0.022 ref|XP_578848.1| PREDICTED: similar to Ac1147 [Rattus norve... 41 0.065 ref|XP_578845.1| PREDICTED: similar to Ac1147 [Rattus norve... 41 0.065 ref|ZP_00396973.1| hypothetical protein DgeoDRAFT_0651 [Dei... 39 0.25 gb|EAL83773.1| hypothetical protein DgeoDRAFT_1879 [Deinoco... 39 0.25 gb|AAN36071.1| hypothetical protein PF11_0493 [Plasmodium f... 37 1.2 >gb|AAK13589.1| rRNA intron-encoded homing endonuclease [Oryza sativa] Length = 66
Identities = 24/35 (68%), Positives = 28/35 (80%) Frame = -1
V+ TP P+ +S+GSGGSMVARLKLKGIDGRA Sbjct: 24 VAYRTPPAPYEKSKSLGSGGSMVARLKLKGIDGRA 58 Score = 35.4 bits (80), Expect = 2.7 Identities = 28/66 (42%), Positives = 35/66 (53%), Gaps = 4/66 (6%) Frame = -3 Query: 614 RRSDTVVVLTINDADQG*DSVHLDSFRT----LEKSRVYGFWGEYGRKAET*RN*RKGTQ 447 RRSDTV+V TINDADQG V ++RT EKS+ G G + + + Sbjct: 4 RRSDTVLVSTINDADQGSADV---AYRTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPP 60
VEPAA
Sbjct: 61 GVEPAA 66 --------------- gnl|ti|818414221 name:POAA-aab64a06.b1 mate_pair:818414565 (901 letters)
Score E
Sequences producing significant alignments: (bits) Value dbj|BAD73369.1| MAP3K delta-1 protein kinase-like [Oryza sa... 50 1e-004 ref|XP_636073.1| putative tyrosine kinase-like protein [Dic... 50 1e-004 ref|XP_647094.1| putative tyrosine kinase-like protein [Dic... 49 2e-004 gb|AAN61142.1| EDR1 [Oryza sativa (japonica cultivar-group)] 48 5e-004 gb|AAK30005.1| CTR2 protein kinase [Rosa hybrid cultivar] 48 5e-004 gb|AAG31141.1| EDR1 [Oryza sativa] 48 5e-004 dbj|BAD28881.1| CTR1-like kinase kinase kinase-like [Oryza ... 48 5e-004 gb|ABA95349.1| protein kinase, putative [Oryza sativa (japo... 48 5e-004 gb|ABA95348.1| protein kinase, putative [Oryza sativa (japo... 48 5e-004 ref|NP_849424.1| ATP binding / protein kinase/ protein seri... 47 7e-004 >dbj|BAD73369.1| MAP3K delta-1 protein kinase-like [Oryza sativa (japonica cultivar-group)] Length = 376 Score = 50.1 bits (118), Expect = 1e-004 Identities = 25/50 (50%), Positives = 34/50 (68%) Frame = -2
LRHPN++LF+G C+VP + L +V E ME GSL+ +IH K K S R+ Sbjct: 172 LRHPNVILFLGACMVPPH--LSMVTEYMEMGSLYYLIHMSGQKKKLSWRR 219 ---------------- gnl|ti|818414583 name:POAA-aab64c03.g1 mate_pair:818414240 (897 letters)
Score E
Sequences producing significant alignments: (bits) Value gb|AAK13589.1| rRNA intron-encoded homing endonuclease [Ory... 52 4e-005 ref|XP_525925.1| PREDICTED: similar to rRNA intron-encoded ... 50 1e-004 gb|AAL31950.1| CDH1-D [Gallus gallus] 50 1e-004 emb|CAH00949.1| unnamed protein product [Kluyveromyces lact... 49 2e-004 ref|XP_523367.1| PREDICTED: similar to rRNA intron-encoded ... 49 2e-004 emb|CAH00948.1| unnamed protein product [Kluyveromyces lact... 42 0.022 emb|CAH00942.1| unnamed protein product [Kluyveromyces lact... 42 0.022 ref|ZP_00396973.1| hypothetical protein DgeoDRAFT_0651 [Dei... 39 0.24 gb|EAL83773.1| hypothetical protein DgeoDRAFT_1879 [Deinoco... 39 0.24 gb|AAN36071.1| hypothetical protein PF11_0493 [Plasmodium f... 37 1.2 >gb|AAK13589.1| rRNA intron-encoded homing endonuclease [Oryza sativa] Length = 66
Identities = 24/35 (68%), Positives = 28/35 (80%) Frame = -1
V+ TP P+ +S+GSGGSMVARLKLKGIDGRA Sbjct: 24 VAYRTPPAPYEKSKSLGSGGSMVARLKLKGIDGRA 58 Score = 35.4 bits (80), Expect = 2.7 Identities = 28/66 (42%), Positives = 35/66 (53%), Gaps = 4/66 (6%) Frame = -3 Query: 439 RRSDTVVVLTINDADQG*DSVHLDSFRT----LEKSRVYGFWGEYGRKAET*RN*RKGTQ 272 RRSDTV+V TINDADQG V ++RT EKS+ G G + + + Sbjct: 4 RRSDTVLVSTINDADQGSADV---AYRTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPP 60
VEPAA
Sbjct: 61 GVEPAA 66 --------------- gnl|ti|818414242 name:POAA-aab64c05.b1 Yüklə 3,49 Mb. Dostları ilə paylaş:
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