Webmaster's Note: As Gerard says below, his Fourth Report came in two parts
Yüklə 3,49 Mb.
|
|
mate_pair:818414585 (914 letters)
Score E
Sequences producing significant alignments: (bits) Value gb|AAX30301.1| unknown [Schistosoma japonicum] 87 8e-016 emb|CAH00945.1| unnamed protein product [Kluyveromyces lact... 86 2e-015 gb|AAX27748.1| unknown [Schistosoma japonicum] 69 3e-010 emb|CAB51041.1| putative transcription factor [Periplaneta ... 65 3e-009 dbj|BAD26579.1| cytochrome P450 like_TBP [Citrullus lanatus] 64 1e-008 pir||T02955 probable cytochrome P450 monooxygenase - maize ... 53 2e-005 dbj|BAA10929.1| cytochrome P450 like_TBP [Nicotiana tabacum] 52 2e-005 dbj|BAB33421.1| putative senescence-associated protein [Pis... 49 3e-004 dbj|BAD18905.1| rRNA intron-encoded endonuclease [Thermopro... 45 0.003 dbj|BAD18906.1| rRNA intron-encoded endonuclease [Thermopro... 43 0.013 >gb|AAX30301.1| unknown [Schistosoma japonicum] Length = 55
Identities = 40/44 (90%), Positives = 41/44 (93%) Frame = +3
LI DAHEW+NEIPTVPTYYLAKPQPRERAW N RGKKTLLSLTL Sbjct: 5 LISDAHEWMNEIPTVPTYYLAKPQPRERAWRNQRGKKTLLSLTL 48 ------------ gnl|ti|818414256 name:POAA-aab64d08.b1 mate_pair:818414599 (291 letters)
Score E
Sequences producing significant alignments: (bits) Value ref|XP_796781.1| PREDICTED: similar to 2-oxoisovalerate deh... 64 2e-009 ref|XP_476751.1| putative branched-chain alpha-keto acid de... 64 2e-009 gb|AAL48834.1| RE25729p [Drosophila melanogaster] 63 3e-009 gb|EAA46092.1| CG17691-PA.3 [Drosophila melanogaster] >gi|6... 63 3e-009 ref|XP_647496.1| 3-methyl-2-oxobutanoate dehydrogenase (lip... 63 4e-009 emb|CAB01970.1| Hypothetical protein F27D4.5 [Caenorhabditi... 62 5e-009 emb|CAE57351.1| Hypothetical protein CBG00293 [Caenorhabdit... 62 5e-009 ref|XP_392824.2| PREDICTED: similar to ENSANGP00000019119 [... 61 1e-008 emb|CAH92405.1| hypothetical protein [Pongo pygmaeus] 61 1e-008 pdb|1X80|B Chain B, Crystal Structure Of The Human Mitochon... 61 1e-008 >ref|XP_796781.1| PREDICTED: similar to 2-oxoisovalerate dehydrogenase beta subunit, mitochondrial precursor (Branched-chain alpha-keto acid dehydrogenase E1 component beta chain) (BCKDH E1-beta), partial [Strongylocentrotus purpuratus] Length = 294 Score = 63.9 bits (154), Expect = 2e-009 Identities = 31/36 (86%), Positives = 31/36 (86%) Frame = +1
RVFNTPLCEQGI GF IG AAVG TAIAEIQFAD I Sbjct: 63 RVFNTPLCEQGIVGFGIGMAAVGATAIAEIQFADYI 98 ---------------- gnl|ti|818414262 name:POAA-aab64e03.b1 mate_pair:818414605 (921 letters)
Score E
Sequences producing significant alignments: (bits) Value ref|XP_760936.1| hypothetical protein UM04789.1 [Ustilago m... 76 1e-012 gb|AAW41578.1| nucleolus protein, putative [Cryptococcus ne... 66 2e-009 gb|AAS54255.1| AGL236Wp [Ashbya gossypii ATCC 10895] >gi|45... 56 2e-006 ref|XP_719423.1| hypothetical protein CaO19_7664 [Candida a... 55 3e-006 ref|XP_650659.1| hypothetical protein 205.t00005 [Entamoeba... 55 3e-006 ref|XP_463365.1| B1097D05.27 [Oryza sativa (japonica cultiv... 55 3e-006 ref|NP_010011.1| hypothetical protein; Ycr087c-ap [Saccharo... 55 5e-006 gb|AAH58310.1| Hypothetical protein MGC65749 [Danio rerio] ... 54 1e-005 gb|AAL57050.1| cell growth-regulating nucleolar protein [Da... 54 1e-005 gb|AAX70100.1| hypothetical protein, conserved [Trypanosoma... 53 1e-005 >ref|XP_760936.1| hypothetical protein UM04789.1 [Ustilago maydis 521] gb|EAK86244.1| hypothetical protein UM04789.1 [Ustilago maydis 521] Length = 426 Score = 76.3 bits (186), Expect = 1e-012 Identities = 33/53 (62%), Positives = 37/53 (69%) Frame = +3
MVSF CDGCGD VKKP+ HY RC AP+ CLDC F + E + HNSCISE Sbjct: 1 MVSFNCDGCGDVVKKPKLQQHYNRCYAPVTCLDCSMQFNSPNEFKSHNSCISE 53 ----------- gnl|ti|818414280 name:POAA-aab64f10.b1 mate_pair:818414623 (894 letters)
Score E
Sequences producing significant alignments: (bits) Value gb|AAK13589.1| rRNA intron-encoded homing endonuclease [Ory... 52 4e-005 ref|XP_525925.1| PREDICTED: similar to rRNA intron-encoded ... 50 1e-004 gb|AAL31950.1| CDH1-D [Gallus gallus] 50 1e-004 emb|CAH00949.1| unnamed protein product [Kluyveromyces lact... 49 2e-004 ref|XP_523367.1| PREDICTED: similar to rRNA intron-encoded ... 49 2e-004 emb|CAH00948.1| unnamed protein product [Kluyveromyces lact... 42 0.022 emb|CAH00942.1| unnamed protein product [Kluyveromyces lact... 42 0.022 ref|ZP_00396973.1| hypothetical protein DgeoDRAFT_0651 [Dei... 39 0.24 gb|EAL83773.1| hypothetical protein DgeoDRAFT_1879 [Deinoco... 39 0.24 gb|AAN36071.1| hypothetical protein PF11_0493 [Plasmodium f... 37 1.2 >gb|AAK13589.1| rRNA intron-encoded homing endonuclease [Oryza sativa] Length = 66
Identities = 24/35 (68%), Positives = 28/35 (80%) Frame = -1
V+ TP P+ +S+GSGGSMVARLKLKGIDGRA Sbjct: 24 VAYRTPPAPYEKSKSLGSGGSMVARLKLKGIDGRA 58 Score = 35.4 bits (80), Expect = 2.7 Identities = 28/66 (42%), Positives = 35/66 (53%), Gaps = 4/66 (6%) Frame = -3 Query: 406 RRSDTVVVLTINDADQG*DSVHLDSFRT----LEKSRVYGFWGEYGRKAET*RN*RKGTQ 239 RRSDTV+V TINDADQG V ++RT EKS+ G G + + + Sbjct: 4 RRSDTVLVSTINDADQGSADV---AYRTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPP 60
VEPAA
Sbjct: 61 GVEPAA 66 ---------------- gnl|ti|818414624 name:POAA-aab64f11.g1 mate_pair:818414281 (905 letters)
Score E
Sequences producing significant alignments: (bits) Value ref|ZP_00872759.1| O-sialoglycoprotein endopeptidase [Novos... 79 3e-013 ref|ZP_00631860.1| Peptidase M22, glycoprotease [Paracoccus... 73 1e-011 ref|YP_351553.1| Glycoprotease (M22) metalloprotease [Rhodo... 72 3e-011 ref|ZP_00268386.1| COG0533: Metal-dependent proteases with ... 72 3e-011 ref|YP_192276.1| O-sialoglycoprotein endopeptidase [Glucono... 72 3e-011 ref|ZP_00858911.1| Peptidase M22, glycoprotease [Bradyrhizo... 71 5e-011 gb|AAV97068.1| O-sialoglycoprotein endopeptidase, putative ... 69 2e-010 ref|XP_635126.1| hypothetical protein DDB0183804 [Dictyoste... 69 3e-010 gb|ABA98521.1| O-sialoglycoprotein endopeptidase, putative ... 67 1e-009 ref|ZP_00578368.1| Peptidase M22, glycoprotease [Sphingopyx... 66 1e-009 >ref|ZP_00872759.1| O-sialoglycoprotein endopeptidase [Novosphingobium aromaticivorans DSM 12444] gb|EAP37255.1| O-sialoglycoprotein endopeptidase [Novosphingobium aromaticivorans DSM 12444] Length = 656 Score = 78.6 bits (192), Expect = 3e-013 Identities = 36/64 (56%), Positives = 47/64 (73%) Frame = +3
NAALR L+ +A++ G++ V PP +LCTDN MI WAG ERL G++D P DV RPRWP Sbjct: 583 NAALRGALEGLAESHGLSLVAPPPKLCTDNAAMIGWAGAERLALGYVD-PLDVAARPRWP 641
LD++
Sbjct: 642 LDEN 645 ---------- PP40_resultat
mate_pair:818414635 (899 letters)
Score E
Sequences producing significant alignments: (bits) Value ref|XP_637331.1| kynurenine aminotransferase [Dictyostelium... 62 3e-008 gb|AAQ15190.1| kynurenine aminotransferase III [Mus musculu... 57 9e-007 ref|NP_776124.1| cysteine conjugate-beta lyase 2 [Mus muscu... 57 9e-007 gb|AAK97625.1| kynurenine aminotransferase [Aedes aegypti] 57 9e-007 gb|AAN71426.1| RE50216p [Drosophila melanogaster] 57 9e-007 gb|AAO41545.1| CG6950-PD, isoform D [Drosophila melanogaste... 57 9e-007 gb|EAL28795.1| GA19977-PA [Drosophila pseudoobscura] 57 9e-007 pdb|1YIY|B Chain B, Aedes Aegypti Kynurenine Aminotransfera... 57 9e-007 ref|XP_874437.1| PREDICTED: similar to Kynurenine--oxogluta... 57 1e-006 ref|XP_884825.1| PREDICTED: similar to Kynurenine--oxogluta... 57 1e-006 >ref|XP_637331.1| kynurenine aminotransferase [Dictyostelium discoideum] gb|EAL63836.1| kynurenine-oxoglutarate transaminase [Dictyostelium discoideum] Length = 435
Identities = 26/30 (86%), Positives = 29/30 (96%) Frame = -2
RFATLPGMWERT+T+GSA KTFSITGW+VG Sbjct: 243 RFATLPGMWERTITIGSAGKTFSITGWKVG 272 ---------- gnl|ti|818414303 name:POAA-aab64h11.b1 mate_pair:818414641 (892 letters)
Score E
Sequences producing significant alignments: (bits) Value ref|XP_629242.1| hypothetical protein DDB0191828 [Dictyoste... 233 7e-060 ref|NP_179370.2| unknown protein [Arabidopsis thaliana] >gi... 216 6e-055 pir||E84556 probable vacuolar sorting-associated protein [i... 216 6e-055 pir||T08858 vacuolar protein-sorting protein homolog A_TM01... 216 8e-055 ref|XP_469973.1| putative vacuolar protein sorting-associat... 211 2e-053 ref|NP_177713.2| unknown protein [Arabidopsis thaliana] 205 2e-051 gb|AAF26771.2| T4O12.9 [Arabidopsis thaliana] 204 3e-051 emb|CAB62653.1| vacuolar sorting protein 35 homolog [Arabid... 204 4e-051 ref|NP_190699.2| unknown protein [Arabidopsis thaliana] 204 4e-051 gb|AAH89195.1| Unknown (protein for MGC:98309) [Xenopus lae... 197 4e-049 >ref|XP_629242.1| hypothetical protein DDB0191828 [Dictyostelium discoideum AX4] gb|EAL60808.1| hypothetical protein DDB0191828 [Dictyostelium discoideum] Length = 781
Identities = 129/241 (53%), Positives = 156/241 (64%) Frame = +1
L + ++ + V F + QYL +T ++ L N P YLL+TVG Sbjct: 65 LSPKSYYALYLVAFDYLQYL---NTYLYEEKHGKKMIELYEVVQHAGNVLPRLYLLITVG 121
SVYIK+K+A AKDVL+DL+EMCRGVQHPTRGLFLR YLSE+ KDKLPD+ S G V D Sbjct: 122 SVYIKTKQAPAKDVLKDLIEMCRGVQHPTRGLFLRHYLSEVTKDKLPDIDSSVENGTVMD 181
S+DFI+ NFTE NKLWVRMQHQ P +D+ERRENERLE Sbjct: 182 SIDFIIQNFTETNKLWVRMQHQAPTKDRERRENERLE----------------------- 218
LR+LVGKNLSR++QL+GVD Y+ VLP+V+EQII+CKDKIAQQYLMEILI Sbjct: 219 --------LRLLVGKNLSRLAQLDGVDQKTYSEVVLPKVVEQIINCKDKIAQQYLMEILI 270
Q Sbjct: 271 Q 271 --------------- gnl|ti|818414641 name:POAA-aab64h11.g1 mate_pair:818414303 (897 letters) Score E
Sequences producing significant alignments: (bits) Value ref|XP_629242.1| hypothetical protein DDB0191828 [Dictyoste... 94 8e-018 emb|CAE49237.1| novel protein simlar to human and mouse vac... 79 2e-013 emb|CAG31542.1| hypothetical protein [Gallus gallus] >gi|57... 73 1e-011 ref|NP_075373.1| vacuolar protein sorting 35 [Mus musculus]... 73 1e-011 gb|AAH89195.1| Unknown (protein for MGC:98309) [Xenopus lae... 73 1e-011 ref|XP_792834.1| PREDICTED: similar to vacuolar protein sor... 73 1e-011 dbj|BAE25050.1| unnamed protein product [Mus musculus] 73 1e-011 dbj|BAE39047.1| unnamed protein product [Mus musculus] 73 1e-011 dbj|BAE39652.1| unnamed protein product [Mus musculus] 73 1e-011 ref|XP_214646.2| PREDICTED: maternal embryonic message 3 [R... 73 1e-011 >ref|XP_629242.1| hypothetical protein DDB0191828 [Dictyostelium discoideum AX4] gb|EAL60808.1| hypothetical protein DDB0191828 [Dictyostelium discoideum] Length = 781
Identities = 45/93 (48%), Positives = 61/93 (65%) Frame = -1
+IY+ AR F +GGP RIRHT+ PLVF SLR + K+Q SG ++LD+ W IG K+F Sbjct: 510 KIYIIARGHFGKGGPHRIRHTLVPLVFCSLRFIRNFKQQVDSGVISLDENKWIAIGSKIF 569
F ETI +A IK ++ S R++LQA Q+ C Sbjct: 570 TFVSETIKALADIKLADLSFRLYLQALQTFDHC 602 -------------- gnl|ti|818412792 name:POAA-aab65a04.b1 mate_pair:818415516 (675 letters)
Score E
Sequences producing significant alignments: (bits) Value ref|XP_638612.1| cAMP phosphodiesterase [Dictyostelium disc... 58 3e-007 gb|AAL99404.1| cGMP phosphodiesterase [Rattus norvegicus] >... 52 2e-005 gb|AAI02959.1| LOC511665 protein [Bos taurus] 51 3e-005 ref|XP_589046.2| PREDICTED: similar to phosphodiesterase 9A... 51 3e-005 ref|XP_692819.1| PREDICTED: similar to phosphodiesterase 9A... 51 3e-005 ref|NP_032830.2| phosphodiesterase 9A [Mus musculus] >gi|26... 50 5e-005 gb|AAH61163.1| Phosphodiesterase 9A [Mus musculus] >gi|3192... 50 5e-005 ref|XP_416747.1| PREDICTED: similar to phosphodiesterase 9A... 50 5e-005 ref|XP_853727.1| PREDICTED: similar to phosphodiesterase 9A... 50 5e-005 dbj|BAE40109.1| unnamed protein product [Mus musculus] 50 5e-005 >ref|XP_638612.1| cAMP phosphodiesterase [Dictyostelium discoideum] emb|CAA06513.1| RegA [Dictyostelium discoideum] gb|AAB03508.1| RegA [Dictyostelium discoideum] sp|Q23917|REGA_DICDI 3',5'-cyclic-nucleotide phosphodiesterase regA (PDEase regA) gb|EAL65213.1| cAMP phosphodiesterase [Dictyostelium discoideum] Length = 793 Score = 57.8 bits (138), Expect = 3e-007 Identities = 28/53 (52%), Positives = 38/53 (71%), Gaps = 1/53 (1%) Frame = -1
FE+F L E F+IP+ L+RFI++V Y+ +N YH FTHAFDV QT+Y L + Sbjct: 453 FENFQLPEIFKIPIEKLQRFIMTVNALYRKNNRYHNFTHAFDVTQTVYTFLTS 505 Score = 37.0 bits (84), Expect = 0.56 Identities = 14/23 (60%), Positives = 20/23 (86%) Frame = -2 Query: 599 LKHWEFNVFRYSEKDLLPLIKNM 531 +K WEF+VF+YSE DL+PL+ +M Sbjct: 430 IKGWEFDVFKYSEDDLMPLLVDM 452 ----------- gnl|ti|818415516 name:POAA-aab65a04.g1 mate_pair:818412792 (901 letters)
Score E
Sequences producing significant alignments: (bits) Value ref|XP_638612.1| cAMP phosphodiesterase [Dictyostelium disc... 59 3e-007 ref|NP_172517.1| ARR4 (RESPONSE REGULATOR 4); transcription... 50 1e-004 ref|NP_176202.1| ARR3 (RESPONSE REGULATOR 3); transcription... 48 4e-004 ref|ZP_00860856.1| PAS [Bradyrhizobium sp. BTAi1] >gi|78515... 48 4e-004 ref|ZP_00673521.1| Guanylate cyclase:Response regulator rec... 45 0.003 gb|AAK14395.1| response regulator protein [Dianthus caryoph... 45 0.003 gb|AAK80681.1| Response regulator (CheY-like receiver domai... 45 0.003 ref|NP_441205.1| hybrid sensory kinase [Synechocystis sp. P... 45 0.004 ref|YP_298733.1| Response regulator receiver:ATP-binding re... 45 0.004 ref|ZP_00402108.1| Helix-turn-helix, Fis-type [Anaeromyxoba... 42 0.022 >ref|XP_638612.1| cAMP phosphodiesterase [Dictyostelium discoideum] emb|CAA06513.1| RegA [Dictyostelium discoideum] gb|AAB03508.1| RegA [Dictyostelium discoideum] sp|Q23917|REGA_DICDI 3',5'-cyclic-nucleotide phosphodiesterase regA (PDEase regA) gb|EAL65213.1| cAMP phosphodiesterase [Dictyostelium discoideum] Length = 793 Score = 58.5 bits (140), Expect = 3e-007 Identities = 37/103 (35%), Positives = 52/103 (50%) Frame = +1
++DLV+ D+MMP +TG LL++I P ++PVI Sbjct: 205 KYDLVLTDVMMPHITGFDLLQRINDHPVHRHIPVI------------------------- 239
+MSG + A I+ GGQDFL KP+ K L KKI TVL++ Sbjct: 240 LMSGTAVDYKYANDTIKIGGQDFLTKPIAKELLKKKIDTVLQS 282 ----------------- gnl|ti|818412834 name:POAA-aab65d10.b1 mate_pair:818415556 (907 letters)
Score E
Sequences producing significant alignments: (bits) Value emb|CAA11401.1| InsA protein [Escherichia coli] 166 1e-039 ------------------ gnl|ti|818412835 name:POAA-aab65d11.b1 mate_pair:818415557 (898 letters)
Score E
Sequences producing significant alignments: (bits) Value gb|ABB04063.1| SacB [Shuttle/allelic-replacement vector pMQ... 160 4e-038 sp|P94468|SACB_BACST Levansucrase precursor (Beta-D-fructof... 160 4e-038 Score = 160 bits (406), Expect = 4e-038 Identities = 80/80 (100%), Positives = 80/80 (100%) Frame = +1
MNIKKFAKQATVLTFTTALLAGGATQAFAKETNQKPYKETYGISHITRHDMLQIPEQQKN Sbjct: 1 MNIKKFAKQATVLTFTTALLAGGATQAFAKETNQKPYKETYGISHITRHDMLQIPEQQKN 60
EKYQVPEFDSSTIKNISSAK Sbjct: 61 EKYQVPEFDSSTIKNISSAK 80 ----------- gnl|ti|818415557 name:POAA-aab65d11.g1 mate_pair:818412835 (887 letters)
Score E
Sequences producing significant alignments: (bits) Value ref|YP_309947.1| IS1 ORF [Shigella sonnei Ss046] >gi|738550... 394 e-108 ------------- gnl|ti|818412842 name:POAA-aab65e08.b1 mate_pair:818415565 (907 letters)
Score E
Sequences producing significant alignments: (bits) Value emb|CAB03612.1| SPAC6G9.10c [Schizosaccharomyces pombe] >gi... 64 6e-009 gb|AAG09081.1| Similar to tRNA-splicing endonuclease positi... 64 9e-009 ref|NP_173124.1| unknown protein [Arabidopsis thaliana] 64 9e-009 emb|CAG62365.1| unnamed protein product [Candida glabrata C... 62 4e-008 emb|CAG85343.1| unnamed protein product [Debaryomyces hanse... 61 5e-008 gb|AAS52799.1| AER115Wp [Ashbya gossypii ATCC 10895] >gi|45... 61 5e-008 ref|XP_537811.2| PREDICTED: similar to senataxin isoform 1 ... 60 8e-008 gb|AAH78166.1| ALS4 protein [Homo sapiens] 60 1e-007 emb|CAI40858.1| RP11-479K20.3 [Homo sapiens] 60 1e-007 gb|AAI06018.1| Unknown (protein for IMAGE:6014937) [Homo sa... 60 1e-007 >emb|CAB03612.1| SPAC6G9.10c [Schizosaccharomyces pombe] ref|NP_594119.1| hypothetical protein SPAC6G9.10c [Schizosaccharomyces pombe 972h-] sp|Q92355|SEN1_SCHPO Helicase sen1 (Endonuclease sen1) Length = 1687 Score = 64.3 bits (155), Expect = 6e-009 Identities = 30/54 (55%), Positives = 41/54 (75%) Frame = -1
+ + S GIGFL D RR+NVALTRAR SLL++G+ +L ++ WG+LVDDA+ R Sbjct: 1583 VKSYSKHGIGFLRDFRRLNVALTRARSSLLIIGNMETLKTDDLWGSLVDDALSR 1636 Score = 37.7 bits (86), Expect = 0.55 Identities = 15/20 (75%), Positives = 19/20 (95%) Frame = -2 Query: 756 DGFQGREKDIIIFSCVRAHS 697 DGFQG+EKDII FSCV+++S Sbjct: 1568 DGFQGQEKDIIFFSCVKSYS 1587 ------------------ gnl|ti|818415565 name:POAA-aab65e08.g1 mate_pair:818412842 (892 letters)
Score E
Sequences producing significant alignments: (bits) Value ref|XP_758928.1| hypothetical protein UM02781.1 [Ustilago m... 56 2e-006 emb|CAB03612.1| SPAC6G9.10c [Schizosaccharomyces pombe] >gi... 56 2e-006 emb|CAG85343.1| unnamed protein product [Debaryomyces hanse... 55 2e-006 gb|EAL17662.1| hypothetical protein CNBL1770 [Cryptococcus ... 55 2e-006 emb|CAA22438.1| SPBC29A10.10c [Schizosaccharomyces pombe] >... 55 3e-006 gb|AAW45045.1| hypothetical protein CNH01780 [Cryptococcus ... 55 3e-006 ref|XP_723150.1| putative nuclear RNA processing factor [Ca... 55 4e-006 ref|XP_451783.1| unnamed protein product [Kluyveromyces lac... 54 9e-006 gb|AAS52799.1| AER115Wp [Ashbya gossypii ATCC 10895] >gi|45... 53 1e-005 sp|Q00416|SEN1_YEAST Helicase SEN1 (tRNA-splicing endonucle... 53 1e-005 >ref|XP_758928.1| hypothetical protein UM02781.1 [Ustilago maydis 521] gb|EAK83692.1| hypothetical protein UM02781.1 [Ustilago maydis 521] Length = 3036
Identities = 23/32 (71%), Positives = 30/32 (93%) Frame = +3
A+E+S++IPL+YG K+CIMVGDPNQLP TV+S Sbjct: 1730 AVELSTIIPLRYGCKQCIMVGDPNQLPPTVIS 1761 ---------------- gnl|ti|818412866 name:POAA-aab65g09.b1 mate_pair:818415588 (834 letters)
Score E
Sequences producing significant alignments: (bits) Value dbj|BAC90546.1| gll2605 [Gloeobacter violaceus PCC 7421] >g... 70 9e-011 ref|NP_641153.1| hypothetical protein XAC0801 [Xanthomonas ... 62 3e-008 ref|YP_202440.1| hypothetical protein XOO3801 [Xanthomonas ... 62 3e-008 ref|YP_362584.1| hypothetical protein XCV0853 [Xanthomonas ... 62 3e-008 gb|EAA74386.1| hypothetical protein FG05047.1 [Gibberella z... 59 2e-007 ref|ZP_00546357.1| hypothetical protein Francci3DRAFT_3552 ... 59 3e-007 ref|YP_242288.1| hypothetical protein XC_1199 [Xanthomonas ... 56 1e-006 ref|NP_103497.1| hypothetical protein mlr2056 [Mesorhizobiu... 56 1e-006 gb|EAL90731.1| conserved hypothetical protein [Aspergillus ... 56 2e-006 emb|CAF32108.1| hypothetical protein, conserved [Aspergillu... 56 2e-006 >dbj|BAC90546.1| gll2605 [Gloeobacter violaceus PCC 7421] ref|NP_925551.1| hypothetical protein gll2605 [Gloeobacter violaceus PCC 7421] Length = 241
Identities = 29/56 (51%), Positives = 42/56 (75%) Frame = -2
GK V WK N+ ++VD+P FY++L++ FP AKV+LSVRDP KWY+SA++ I+ Sbjct: 85 GKPVAWKALYQNFRSSVDWPTCAFYRELIQVFPAAKVLLSVRDPYKWYQSAFETIY 140 --------------------------- gnl|ti|818412870 name:POAA-aab65h03.b1 mate_pair:818415592 (900 letters)
Score E
Sequences producing significant alignments: (bits) Value gb|ABB17069.1| chloramphenicol acetyl transferase [Moss gen... 465 e-129 ---------- gnl|ti|820217101 name:POAA-aab66d09.g1 mate_pair:820216764 (910 letters)
Score E
Sequences producing significant alignments: (bits) Value sp|P03851|YPB3_ECOLI Hypothetical 9.4 kDa protein 130 5e-029 gb|AAB59124.1| 10.2 kd ORF [Plasmid ColE1] >gi|9507257|ref|... 122 1e-026 ref|ZP_00374729.1| conserved hypothetical protein [Wolbachi... 81 6e-014 pir||JQ1541 hypothetical 16.9K protein - Salmonella typhimu... 61 6e-008 ---------- gnl|ti|820216767 name:POAA-aab66d12.b1 mate_pair:820217104 (886 letters)
Score E
Sequences producing significant alignments: (bits) Value ref|XP_370145.1| hypothetical protein MG06642.4 [Magnaporth... 58 4e-007 emb|CAD70465.1| conserved hypothetical protein [Neurospora ... 56 2e-006 Yüklə 3,49 Mb. Dostları ilə paylaş:
|