Hatfield marine science center station bibliography

HATFIELD MARINE SCIENCE CENTER

STATION BIBLIOGRAPHY

Revised June 14, 2012

Names of authors affiliated with HMSC appear in bold print.

Names of researchers based at HMSC as graduate students are followed by single asterisks (*).

Names of researchers based at the Seafood Laboratory in Astoria as graduate students are

followed by double asterisks (**)

This file may be searched in any web browser by using the Find Command.

Abbot, D.H.; Embley, Robert W. and Hobart, M.A. Correlation of shear strength, hydraulic conductivity, and thermal gradients with sediment disturbance: South Pass Region, Mississippi Delta. Geo-Marine Letters. 1985. v.5 (2):113-119.



Adam, Michael D.; Hayes, John P. and Weeks, Jennifer. Effects of thinning on bird abundance and diversity in the Oregon Coast Range: a preliminary report. COPE Report. 1996. v.9 (1):4-6.



Agiovlasitis, S.; McCubbin, J. A.; Yun, J.; Mpitsos, George and Pavol, M. J. Effects of Down syndrome on three-dimensional motion during walking at different speeds. Gait & Posture. 2009. v.30 (3):345-350. Doi: 10.1016/j.gaitpost.2009.06.003.



Ainley, D. G.; Dugger, K. D.; Ford, R. G.; Pierce, S. D.; Reese, D. C.; Brodeur, Richard D.; Tynan, C. T. and Barth, J. A. Association of predators and prey at frontal features in the California Current: competition, facilitation, and co-occurrence. Marine Ecology-Progress Series. 2009. v.389:271-294. Doi: 10.3354/meps08153.



Aksornsri, Weeraporn**. Evaluating a value-added product through studies on consumer acceptability, sensory properties, and their correlations to biochemical and instrumental texture properties: the case of Pacific whiting (Merluccius productus) individually quick frozen (IQF) fillets. Ph.D. Dissertation. Corvallis, OR: Oregon State University. (Food Science and Technology). 1996. http://hdl.handle.net/1957/28166



Alexander, M.; Capotondi, A.; Miller, A.; Chai, F.; Brodeur, Richard D. and Deser, C. Decadal variability in the northeast Pacific in a physical-ecosystem model: Role of mixed layer depth and trophic interactions. Journal of Geophysical Research -Oceans. 2008. v.113 (C2):C02017 - Doi:10.1029/2007JC004359.


Al-Jufaily, Saud M.*. Variation in the maturity schedule of English sole and its influence on calculating the F % target fishing rate. Master's Thesis. Corvallis, OR: Oregon State University (Fisheries Science). 1996.



Al-Jufaily, Saud M.*. Qualitative analysis of sardine and anchovy oscillations and implications for the management of sardine and anchovy fisheries in Oman. Ph.D. Dissertation. Corvallis, OR: Oregon State University (Fisheries and Wildlife). 2002.



Allan, Jonathan C.; Hart, R. and Tranquili, J.V. The use of passive intergrated transponder (PIT) tags to trace cobble transport in a mixed sand-and-gravel beach on the high-energy Oregon coast, USA. Marine Geology. 2006. v.232 (1-2):63-86.



Allan, Jonathan C. and Komar, P.D. Climate controls on U.S. West coast erosion processes. Journal of Coastal Research. 2006. v.22 (3):511-529.



Allison, Gary W.*. The ecological consequences of the reduction of species diversity : experimental approaches. Ph.D. Dissertation. Corvallis, OR: Oregon State University (Zoology). 1997.



Almasi, K.N. and Eldridge, Peter M. A dynamic model of an estuarine invasion by a non-native seagrass. Estuaries and Coasts. 2008. v.31 (1):163-176.



Almonacid-Merino, Sergio Felipe**. Experimental and mathematical procedures for the estimation of shel-life; application to temperature-abused chilled seafood. Master's Thesis. Corvallis, OR: Oregon State University (Food Science and Technology). 1993. http://hdl.handle.net/1957/27097



Almonacid-Merino, Sergio Felipe**. Monte Carlo random walk simulation as a complement to experimental and theoretical approaches: application to mass transfer in fish muscle tissue. Bioresource Engineering. 2006. v.Ph.D.:110.



Alspach, George Samuel Jr.*. Aspects of osmoregulation in an intertidal shore crab, Hemigrapsus nudus (Dana). Master's Thesis. Corvallis: Oregon State University. (Zoology). 1967. http://hdl.handle.net/1957/29848



Alspach, George S. Jr.*. Osmotic and ionic regulation in the dungeness crab, Cancer magister (Dana). Ph.D. Dissertation. Corvallis, OR: Oregon State University (Zoology). 1972. http://hdl.handle.net/1957/29209



Ambusaidi, Hilal Saud*. Distribution and assemblages of demersal fish in Oman. Master's Thesis. Corvallis, OR: Oregon State University (Fisheries Science). 1994.



Amend, M.; Yoklavich, M.M.; Rzhanov, Y.; Grimes, C.B. and Wakefield, W. Waldo. Mosaics of benthic habitats using laser line scan technology. Mapping the seafloor for habitat characterization. 2007. (no. 47):61-70.



Ames, Robert T.; Leaman, B.M. and Ames, Kelly L. Evaluation of video technology for monitoring of multispecies longline catches. North American Journal of Fisheries Management. 2007. v.27 (3):955-964.



Amogan, H.P.; Martinez, J.P.; Ciuffetti, L.M.; Field, K.G. and Reno, Paul W. Karyotype and genome size of Nadelspora canceri determined by pulsed field gel electrophoresis. Acta Protozoologica. 2006. v.45 (3):249-254. http://www1.nencki.gov.pl/pdf/ap/ap913.pdf



Amspoker, Michael C.*. The distribution of intertidal diatoms associated with the sediments of Yaquina Estuary, Oregon. Ph.D. Dissertation. Corvallis, OR: Oregon State University (Botany). 1977. http://hdl.handle.net/1957/29207



An, Haejung; Calik, Hakan** ; He, Haian**; Adams, Roger M. and Morrissey, Michael T. Use of high hydrostatic pressure to control pathogens in raw oysters. Journal of Shellfish Research. 2000. v.19 (1):655-656.



An, Haejung; Chung, Yun-Chin** and Morrissey, Michael T. G. Sylvia and M. T. Morrissey, eds. 1992. Proteolysis of Pacific whiting and its inhibition. Held March 30-31, 1992. Newport, OR. Oregon Sea Grant, Oregon State University. (ORESU-W-92-001). 36-37.



An, Haejung; Craven, Cormac** and Kim, Shin-Hee**. Histamine formation and analysis in fish. In: J. DeVries, eds. Food Safety from a Chemical Perspective: Is there a role for HACCP? Minneapolis, MN: MN Analytical Progress Press. 1996. p.151-164.



An, Haejung; Hartley, Polla S. ; Fan, Xianbin and Morrissey, Michael T. Activity staining at Pacific whiting (Merluccius productus) protease. Journal of Food Science. 1995. v.60 (6):1228-1232.



An, Haejung; Peters, Margo Y.** and Seymour, Thomas A. Roles of endogenous enzymes on surimi gelation. Trends in Food Science and Technology. 1996. v.7:321-327.



An, Haejung; Peters, Margo Y.**; Seymour, Thomas A. and Morrissey, Michael T. Isolation and activation of cathepsin L-inhibitor complex from Pacific whiting (Merluccius productus). Journal of Agricultural and Food Chemistry. 1994. v.43 (2):327-330.



An, Haejung; Scope, R.K.; Rodriguez, M. and Ingram, L.O. Gel electrophorectic analysis of Zymomonas mobilis glycolytic and fermentive enzymes: identification of alcohol dehydrogenase II as a stress protein. Journal of Bacteriology. 1991. v.173 (19):5975-5882.



An, Haejung; Seymour, Thomas A. ; Wu, Juwen** and Morrissey, Michael T. Assay systems and characterization of Pacific whiting (Merluccius productus) protease. Journal of Food Science. 1994. v.59 (2):277-281.



An, Haejung; Weerasinghe, Vasana C.**; Seymour, Thomas A. and Morrissey, Michael T. Degradation of Pacific whiting surimi proteins by cathepsins. Journal of Food Science. 1994. v.59 (5):1013-1017, 1033.



An, Haejung ; Weerasinghe, Vasana C.**; Seymour, Thomas A. and Morrissey, Michael T. Cathepsin degradation of Pacific whiting surimi proteins. Journal of Food Science. 1994. v.59 (5):1013-1017.



Anadu, D.I.; Chapman, Gary A.; Curtis, L.R. and Tubb, R.A. Effect of zinc exposure on subsequent acute tolerance to heavy metals in rainbow trout. Bulletin of Environmental Contamination and Toxicology. 1989. v.43 (3):329-336.



Anderson, J.; Birge, W.; Gentile, J.; Lake, J.; Rodgers, J. , Jr. and Swartz, Richard C. K. L. Dickson; A. W. Maki and W. A. Brungs, eds. 1987. Biological effects, bioaccumulation, and ecotoxicology of sediment-associated chemicals (Chapter 18). Held August 12-17,1984. Florissant, CO. Pergamon Press. (SETAC special publications series). 267-296.



Anderson, James Allen*. A morphological and histological study of Kudoa spp. (Myxozoa, Myxosporea) in four Pacific marine fishes. Master's Thesis. Corvallis, OR: Oregon State University (Fisheries and Wildlife). 1985.



Anderson, J.L.; Laurel, Benjamin J. and Brown, J.A. Diel changes in behaviour and habitat use by age-0 Atlantic cod (Gadus morhua L.) in the laboratory and field. Journal of Experimental Marine Biology and Ecology. 2007. v.351 (1-2):267-275.



Anderson, Laura*. 2001. Oregon Coast tourism monitoring system: cooperative research venture for sustainable development and management. Oregon Sea Grant. Corvallis, Oregon.



Andrade, M.A.; Nuno, J.C.; Moran, F.; Montero, F. and Mpitsos, George J. Complex dynamics of a catalytic network having faulty replication into an error species. Physica D, Nonlinear Phenomena. 1993. v.63:21-40.



Ankley, G.T.; Berry, W.J.; DiToro, D.M.; Hansen, D.J.; Hoke, R.A.; Mount, D.R.; Reiley, M.C.; Swartz, Richard C. and Zarba, C.S. Use of equilibrium partitioning to establish sediment quality criteria for nonionic chemicals: a reply to Iannuzzi et al. Environmental Toxicology and Chemistry. 1996. v.15 (7):1019-1024.



Ankley, G.T.; Thomas, N.A.; DiToro, D.M.; Hansen, D.J.; Mahoney, J.D.; Berry, W.J.; Swartz, Richard C.; Hoke, R.A.; Garrison, A.W.; Allen, H.E. and Zarba, C.S. Assessing potential bioavailibility of metals in sediments: a proposed approach. Environmental Management. 1994. v.18 (3):331-337.



Appelgate, Bruce*. Tectonic and volcanic structures of the southern flank of Axial Volcano, Juan de Fuca Ridge : results from a SeaMARC I sidescan sonar survey. Master's Thesis. Corvallis, OR: Oregon State University (Oceanography). 1988.



Appelgate, Bruce*. Volcanic and structural morphology of the south flank of Axial Volcano, Juan de Fuca Ridge: results from a sea MARC I slide scan sonar survey. Journal of Geophysical Research. 1990. v.95 (B8):12,765-12,783.



Appelgate, Bruce* and Embley, Robert W. Submarine tumuli and inflated tube-fed lava flows on Axial Volcano, Juan de Fuca Ridge. Bulletin of Volcanology. 1992. v.54 (6):447-458.



Appelgate, Bruce*; Goldfinger, Chris*; MacKay, M.E.; Kulm, L.D.; Fox, Christopher G.; Embley, Robert W. and Meis, Philip J. A left-lateral strike-slip fault seaward of the Oregon convergent margin. Tectonics. 1992. v.11 (3):465-477.



Arabas, K. B.; Black, Bryan A.; Lentile, L.; Speer, J. and Sparks, J. Disturbance history of a mixed conifer stand in central Idaho, USA. Tree-Ring Research. 2008 v.64 (2 ):67-80. http://www.bioone.org/doi/pdf/10.3959/2007-13.1



Argaiz, Alvaro**. Relation of the decomposition of trimethylamine oxide and the quality of Pacific shrimp (Pandalus jordani). Master's Thesis. Corvallis, OR: Oregon State University. (Food Science and Technology). 1976. http://hdl.handle.net/1957/26970



Arkoosh, Mary R. ; Boylen, Deborah ; Dietrich, Joseph ; Anulacion, B. F.; Ylitalo, G.; Bravo, C. F.; Johnson, L. L.; Loge, F. J. and Collier, T. K. Disease susceptibility of salmon exposed to polybrominated diphenyl ethers (PBDEs). Aquatic Toxicology. 2010. v.98 (1):51-59. 10.1016/j.aquatox.2010.01.013.



Arkoosh, Mary R.; Boylen, D.; Stafford, Coral L.*; Johnson, L. L. and Collier, T. K. Use of disease challenge assay to assess immunotoxicity of xenobiotics in fish. In: G. K. Ostrander, eds. Techniques in Aquatic Toxicology, Vol. 2. Boca Raton, FL: CRC. 2004. p.19-37.



Arkoosh, Mary R.*; Casillas, E.; Clemons, Ethan R.; Huffman, Paul; Kagley, Anna N.; Adams, N.; Sanborn, H.R.; Collier, T.K. and Stein, J.E. Increased susceptibility of juvenile chinook salmon to vibriosis after exposure to chlorinated and aromatic compounds found in contaminated urban estuaries. Journal of Aquatic Animal Health. 2001. v.13 (3):257-268. http://hdl.handle.net/1957/25139



Arkoosh, Mary R.²; Cassillas, E.; Clemons, Ethan²; Kagley, Anna N.²; Olson, Robert E.¹; Reno, Paul W.¹ and Stein, J.E. Effect of pollution on fish diseases: potential impacts on salmonid populations. Journal of Aquatic Animal Health. 1998. v.10 (2):182-190. doi: 10.1577/1548-8667(1998)010<0182:EOPOFD>2.0.CO;2.



Arkoosh, Mary R.*; Clemons, Ethan R.; Huffman, Paul; Sanborn, H.R.; Casillas, E. and Stein, J.E. Leukoproliferative response of splenocytes from English sole (Pleuronectes vetulus) exposed to chemical contaminants. Environmental Toxicology and Chemistry. 1996. v.15 (7):1154-1162.



Arkoosh, Mary R.*; Clemons, Ethan R.; Huffman, Paul; Sanborn, H.R.; Casillas, E. and Stein, J.E. Evaluation of the leukoproliferative response of English sole (Pleuronectes vetulus) as a biomarker for immune dysfunction. Marine Environmental Research. 1996. v.42 (1-4):181-186.



Arkoosh, Mary R.; Clemons, Ethan R.; Kagley, Anna N.; Stafford, Coral L.*; Glass, Adam C.; Jacobson, Kym C.; Reno, Paul W.; Myers, M. S.; Casillas, E.; Loge, Frank; Johnson, L. L. and Collier, T. K. Survey of pathogens in juvenile salmon Oncorhynchus spp. migrating through Pacific Northwest estuaries. Journal of Aquatic Animal Health. 2004. v.16 (4):186-196. http://hdl.handle.net/1957/25133



Arkoosh, Mary R.* and Collier, T.K. Ecological Risk Assessment paradigm for salmon: Analyzing immune function to evaluate risk. Human and Ecological Risk Assessment. 2002. v.8 (2):265-276.



Arkoosh, Mary R.; Johnson, L.; Rossignol, P. A. and Collier, T. K. Predicting the impact of perturbations on salmon (Oncorhynchus spp.) communities: implications for monitoring. Canadian Journal of Fisheries and Aquatic Sciences. 2004. v.61 (7):1166-1175.



Armstrong, David A.*. Some biological effects of the insecticide sevin on marine bivalves. Master's Thesis. Corvallis, OR: Oregon State University (Fisheries and Wildlife). 1974. http://hdl.handle.net/1957/17986



Austin, Susan V. 1981. A Guide to Oregon's Commercial Fishing Vessels. Oregon State University Extension Marine Advisory Program. Corvallis, Oregon. SG 68.



Auth, Toby D. Distribution and community structure of ichthyoplankton from the northern and central California Current in May 2004-06. Fisheries Oceanography. 2008 v.17 (4):316-331. 10.1111/j.1365-2419.2008.00481.x. http://www3.interscience.wiley.com/cgi-bin/fulltext/120747861/PDFSTART



Auth, Toby D. Importance of far-offshore sampling in evaluating the ichthyoplankton community in the Northern California Current. California Cooperative Oceanic Fisheries Investigations Reports. 2009.107-117. http://calcofi.org/publications/calcofireports/vol50/Calcofi_vol.50_finals.pdf


Auth, Toby D. and Brodeur, Richard D. Distribution and community structure of ichthyoplankton off the coast of Oregon, USA, in 2000 and 2002. Marine Ecology Progress Series. 2006. v.319:199-213. http://hdl.handle.net/1957/25813



Auth, Toby D.; Brodeur, Richard D. and Fisher, K. M. Diel variation in vertical distribution of an offshore ichthyoplankton community off the Oregon coast. Fishery Bulletin. 2007. v.105 (3):313-326. http://fishbull.noaa.gov/1053/auth.pdf