Instream Flow Council Instream flow and stream ecology literature OctoberApril 104, 2016 hb

Irvine, J.R., and B.R. Ward. 1989. Patterns of timing and size of wild coho salmon (Oncorhynchus kisutch) smolts migrating from the Keough River watershed on northern Vancouver Island. Canadian Journal of Fisheries and Aquatic Sciences 46 (7): 1086-1094.
Irvine, J.R., and N.E. West. 1979. Riparian tree species distribution and succession along the lower Escalante River, Utah. Southwestern Naturalist 24 (2): 331-346.
Irvine, K.N., and J.J. Drake. 1987. Spatial analysis of snow- and rain-generated highflows in southern Ontario. Can. Geogr. 31: 140-149.
Irvine, R.L., T. Oussoren, J.S. Baxter, and D.C. Schmidt. 2009. The effects of flow reduction rates on fish stranding in British Columbia, Canada. River Research and Applications 25: 405-415.
Irving, D.B., and T. Modde. 2000. Home-range fidelity and use of historical habitat by adult Colorado squawfish (Ptychocheilus lucius) in the White River, Colorado, and Utah. Western North American Naturalist 60: 16-25.
Irwin, E.R., and M.C. Freeman. 2002. Proposal for adaptive management to conserve biotic integrity in a regulated segment of the Tallapoosa River, Alabama, U.S.A. Conservation Biology 16: 1212-1222.
Irwin, E.R., M.C. Freeman, and K.M. Costley. 1999. Habitat use by juvenile channel catfish and flathead catfish in lotic systems in Alabama. Pages 223-230 in: E.R. Irwin, W.A. Hubert, C.F. Rabeni, H.L. Schramm, Jr., and T. Coon, editors. Catfish 2000: proceedings of the international ictalurid symposium. American Fisheries Society Symposium 24, Bethesda, Maryland.
ISAB (Independent Scientific Advisory Board). 2003. Review of flow augmentation: update and clarification. Report to the Northwest Power Planning Council, the National Marine Fisheries Services, the Columbia River Basin Tribes, ISAB 2003-1, Portland, Oregon.
Isaak, D.J., and W.A. Hubert. 2001. A hypothesis about factors that affect maximum summer temperatures across montane landscapes. Journal of the American Water Resources Association 37: 351-366.

Isaak, D.J., C.C. Muhlfield, A.S. Todd, R. Al-Chokhachy, J. Roberts, J.L. Kershner, K.D. Fausch, and S.W. Hostetler. 2012. The past as prelude to the future for understanding 21^st-century climate effects on Rocky Mountain trout. Fisheries 37 (12): 542-556.

Isaak, D.J., R.F. Thurow, B.E. Rieman, and J.B. Dunham. 2007. Chinook salmon use of spawning patches: relative roles of habitat quality, size, and connectivity. Ecological Applications 17: 352-364. Doi: 10.1890/05-1949.
Ittekkot, V., C. Humborg, and P. Schaefer. 2000. Hydrological alterations and marine biogeochemistry: A silicate issue? Bioscience 50 (9): 776-782.
Iverson, M., P. Wiberg-Larsen, S.B. Hansen, and F.S. Hansen. 1978. The effect of partial and total drought on the macroinvertebrate community of three small Danish streams. Hydrobiologia 60: 235-242.
Jackson, D.A., P.R. Peres-Neto, and J.D. Olden. 2001. What controls who is where in freshwater fish communities: the roles of biotic, abiotic and spatial factors? Canadian Journal of Fisheries and Aquatic Sciences 58: 157-170. Doi:10.1139/cjfas-58-1-157.
Jackson, D.C., A.V. Brown, and W.D. Davies. 1991. Zooplankton transport and diel drift in the Jordan Dam tailwater during a minimum flow regime. Rivers 2 (3): 190-197.
Jackson, D.C., and W.D. Davies. 1988. Environmental factors influencing summer angler effort on the Jordan Dam tailwater. North American Journal of Fisheries Management 8: 305-309.
Jackson, H.M., C.N. Gibbins, and C. Soulsby. 2007. Role of discharge and temperature variation in determining invertebrate community structure in a regulated river. River Research and Applications 23: 651-669.
Jackson, R.B., S.R. Carpenter, C.N. Dahm, et al. 2001. Water in a changing world. Ecological Applications 11: 1027-1045.
Jackson, R.B., E.G. Jobbagy, R. Avissar, S.B. Roy, D.J. Barrett, C.W. Cook, K.A. Farley, D/C/ le Maitre, B.A. McCarl, and B.C. Murray. 2005. Trading water for carbon with biological carbon sequestration. Science 310: 1944-1947.
Jackson, R.I. 1950. Variations in flow patterns at Hell’s Gate and their relationships to the migration of sockeye salmon. International Pacific Salmon Fisheries Commission, Bulletin 3: 85-129.
Jackson, W.L., and R.L. Beschta. 1992. Instream flows for rivers: maintaining stream form and function as a basis for protecting dependent uses. Pp. 524-535 in: M.E. Jones and A. Laeanen, editors, Interdisciplinary Approaches in Hydrology and Hydrogeology. American Institute of Hydrology, St. Paul, MN.
Jackson, W., T. Martinez, P. Cuplin, and W. Minkley. 1987. Assessment of water conditions and management opportunities in support of riparian values: BLM San Pedro River Properties... Denver, CO: U.S. Bureau of Land Management (BLM-YA-PT-88).
Jacobson, R.A. 2008. Preface: Applications of MesoHABSIM using fish target communities. River Research and Applications 24: 434-438.
Jacobson, R.A., G.S. Warner, P. Parasiewicz, A.C. Batzoglou, and F.L. Ogden. 2008. An interdisciplinary study of the effects of groundwater extraction on freshwater fishes. International Journal of Ecological Economics and Statistics 12 (F08): 7-25.
Jacobson, R.B., and D.L. Galat. 2005. Flow and form in rehabilitation of large-river ecosystems - an example from the lower Missouri River. Geomorphology 77: 249-269. Doi: 10.1016/j.geomorph.2006.01.014.
Jaeger, K.L., and J.D. Olden. 2012. Electrical resistance sensor arrays as a means to quantify longitudinal connectivity of rivers. River Research and Applications 28: 1843-1852. Doi: 10.1002/rra.1554.
Jaeger, M.E., A.V. Zale, T.E. McMahon, and B.J. Schmitz. 2005. Seasonal movements, habitat use, aggregation, exploitation, and entrainment of saugers in the lower Yellowstone River: an empirical assessment of factors affecting population recovery. North American Journal of Fisheries Management 25 (4): 1550-1568.
Jager, H.I. 2014. Thinking outside the channel: timing pulse flows to benefit salmon via indirect pathways. Ecol. Model. 273: 117-127.
Jager, H.I., H.E. Cardwell, M.J. Sale, M.S. Bevelhimer, C.C. Coutant, and W. van Winkle. 1997. Modelling the linkages between flow management and salmon recruitment in streams. Ecological Modelling 103: 171-191.
Jager, H.I., D.L. DeAngelis, M.J. Sale, W. Van Winkle, D.D. Schmoyer, M.J. Sabo, D.J. Orth, and J.A. Lukas. 1993. An individual-based model for smallmouth bass reproduction and young-of-year dynamics in streams. Rivers 4 (2): 91-113.
Jager, H.I., and E. Pert. 1997. Comment: testing the independence of microhabitat preferences and flow (part 2). Transactions of the American Fisheries Society 126 (3): 537540.
Jager, H.I., and K.A. Rose. 2003. Designing optimal flow patterns for fall chinook salmon in a Central Valley, California, river. North American Journal of Fisheries Management 23 (1): 1-21.
Jager, H.I., W. Van Winkle, and B.D. Holcomb. 1999. Would hydrologic climate change in Sierra Nevada streams influence trout persistence? Transactions of the American Fisheries Society 128 (2): 222-240. Doi:10.1577/1548-8659(1999)128<0222:WHCCIS>2.0.CO;2.
Jain, K.E., I.K. Birdwell, and A.P. Farrell. 1998. Repeat performance of mature sockeye salmon following a brief recovery period: a proposed measure of fish health and water quality. Canadian Journal of Zoology 76: 1488-1496.
Jain, K.E., and A.P. Farrell. 2003. Influence of seasonal temperature on the repeat swimming performance of rainbow trout Oncorhynchus mykiss. Journal of Experimental Biology 206: 3569-3579.
Jain, K.E., J.C. Hamilton, and A.P. Farrell. 1997. Use of a ramp velocity test to measure critical swimming speed in rainbow trout, Oncorhynchus mykiss. Comparative Biochemistry and Physiology 117A: 441-444.
Jakober, M.J. 1995. Autumn and winter movement and habitat use of resident bull trout and westslope cutthroat trout in Montana. M.Sc. thesis, Montana State University, Bozeman, Montana. (elsewhere listed as Influence of stream size and morphology on the seasonal distribution and habitat use of resident bull trout and westslope cutthroat trout in Montana.
Jakober, M.I., T.E. McMahon, and R.F. Thurow. 2000. Diel habitat partitioning by bull charr and cutthroat trout during fall and winter in Rocky Mountain streams. Environmental Biology of Fishes 59: 79-89.
Jakober, M.I., T.E. McMahon, R.F. Thurow, and C.G. Clancy. 1998. Role of stream ice on fall and winter movements and habitat use by bull trout and cutthroat trout in Montana headwater streams. Transactions of the American Fisheries Society 127 (2): 223-235. Doi:10.1577/1548-8659(1998)1272.0.CO:2.
James, A.B.W., Z.S. Dewson, and R.G. Death. 2008. Do stream macroinvertebrates use instream refugia in response to severe short-term flow reduction in New Zealand streams? Freshwater Biology 53: 1316-1334. Doi: 10.1111/j.1365-2427.2008.01969.x
James, A.B.W., Z.S. Dewson, and R.G. Death. 2008. The effect of experimental flow reductions on macroinvertebrate drift in natural and streamside channels. River Res. Appl. 24: 22-35. Doi: 10.1002/rra.1052.
James, A.B.W., Z.S. Dewson, and R.G. Death. 2009. The influence of flow reduction on macroinvertebrate drift density and distance in three New Zealand streams. J. N. Am. Benthol. Soc. 28: 220-232. Doi: 10.1899/07-146.1.
James, C.A., J. Kershner, J. Samhouri, S. O’Neill, and P.S. Levin. 2012. A methodology for evaluating and ranking water quantity indicators in support of ecosystem-based management. Environmental Management 49: 703-719. Doi: 10.1007/s00267-012-9808-7
James, D.A., J.W. Erickson, and B.A. Barton. 2007. Brown trout seasonal movement patterns and habitat use in an urbanized South Dakota stream. North American Journal of Fisheries Management 27: 978-985.
James, D.A., J.W. Wilhite, and S.R. Chipps. 2010. Influence of drought conditions on brown trout biomass and size structure in the Black Hills, South Dakota. North American Journal of Fisheries Management 30 (3): 791-798. Doi: 10.1557/M09-199.1
James, L.A. 1997. Channel incision on the lower American River, California, from streamflow gage records. Water Resources Research 33: 485-490.
Janac, M., M. Ondrackova, P. Jurajda, Z. Valova, and M. Reichard. 2010. Flood duration determines the reproduction success of fish in artificial oxbows in a floodplain of a potamal river. Ecol. Freshw. Fish 19 (4): 644-655. Doi: 10.1111/j.1600-0633.2010.00449.x.
Jang, I.K., and C.H. Kim. 1992. A study on the changes of the molluscan and crustacean fauna after the construction of the Naktong estuary barrage. Bulletin of the Korean Fisheries Society 25: 265-281.
Jansson, R., C. Nilsson, M. Dynesius, and E. Andersson. 2000. Effects of river regulation on river-margin vegetation: a comparison of eight boreal rivers. Ecological Applications 10: 203-224.
Jansson, R., C. Nilsson, and B. Malmqvist. 2007. Restoring freshwater ecosystems in riverine landscapes: the roles of connectivity and recovery processes. Freshwater Biology 32: 589-596.
Jansson, R., C. Nilsson, and B. Renofalt. 2000. Fragmentation of riparian floras in rivers with multiple dams. Ecology 81: 899-903.
Jardine, T.D., N.R. Bond, M.A. Burford, M.J. Kennard, D.P. Ward, P. Bayliss, P.M. Davies, M.M. Douglas, S.K. Hamilton, J.M. Melack, R.J. Naiman, N.E. Pettit, B.J. Pusey, D.M. warfe, and S.E. Bunn. 2015. Does flood rhythm drive ecosystem responses in tropical riverscapes? Ecology 96 (3): 684-692.
Jarrett, R.D. 1990. Hydrologic and hydraulic research in mountain rivers. Water Resources Bulletin 26: 419-429.
Jarvela, J. 1992. Flow resistance of flexible and stiff vegetation: a flume study with natural plants. Journal of Hydrology 269: 44-54.
Jassby, A.S., W.J. Kimmerer, S.G. Monismith, C. Arbor, J.E. Cloern, T.M. Powell, J.R. Schubel, and T.J. Vendlinski. 1995. Isohaline position as a habitat indicator for estuarine populations. Ecological Applications 5: 272-289.
Jay, D.A., and C.A. Simenstad. 1996. Downstream effects of water withdrawn in a small high-gradient basin: erosion and deposition on the Skokomish delta. Estuaries 19: 501-517.
Jeffers, J.N.R. 1998. Characterization of river habitat features using ordination techniques. Aquatic Conservation Marine and Freshwater Ecosystems 8: 529-540.
Jefferson, A., A. Nolin, S. Lewis, and C. Tague. Hydrogeologic controls on streamflow sensitivity to climatic variation. Hydrologic Processes doi: 10.1002/hyp.7041.
Jeffres, C.A. 2006. Ephemeral floodplain habitats provide best growth conditions for juvenile Chinook salmon in a California river. M.S. thesis. University of California, Davis.
Jeffres, C.A., A.P. Klimley, J.E. Merz, and J.J. Cech. 2006. Movement of Sacramento sucker, Catostomus occidentalis, and hitch, Lavinia exilicauda, during a spring release of water from Camanche Dam in the Mokelumne River, California. Environmental Biology of Fishes 75: 365-373.
Jeffres, C., and P.B. Moyle. 2012. When good fish make bad decisions: coho salmon in an ecological trap. North American Journal of Fisheries Management 32 (1): 87-92. Doi: 10.1080/02755947,2012.661389
Jeffres, C., J.J. Opperman, and P.B. Moyle. 2008. Ephemeral floodplain habitats provide best growth conditions for juvenile Chinook salmon in a California river. Environmental Biology of Fishes 83 (4): 449-458. Doi: 10.1007/s10641-008-9367-1.

Jenkins, A.R., and E.R. Keeley. 2010. Bioenergetic assessment of habitat quality for stream-dwelling cutthroat trout (Oncorhynchus clarkii bouvieri) with implications for climate change and nutrient supplementation. Canadian Journal of Fisheries and Aquatic Sciences 67 (2): 371-385. Doi:10.1139/F09-193

Jenkins, K.M., and A.J. Boulton. 1998. Community dynamics of invertebrates emerging from reflooded lake sediments: flood pulse and aeolian influences. International Journal of Ecology and Environmental Sciences 24: 179-192.
Jenkins, K.M., and A.J. Boulton. 2003. Connectivity in a dryland river: short-term aquatic microinvertebrate recruitment following floodplain inundation. Ecology 84 (10): 2708-2723.
Jenkins, K.M., and A.J. Boulton. 2007. Detecting impacts and setting restoration targets in arid-zone rivers: aquatic micro-invertebrate responses to reduced floodplain inundation. Journal of Applied Ecology 44: 823-832.
Jenkins, T.M., Jr. 1969. Social structure, position choice and microdistribution of two trout species (Salmo trutta and S. gairdneri) resident in mountain streams. Animal Behaviour Monographs 2: 56-123.
Jenkins, T.M., Jr., S. Diehl, K.W. Kratz, and S.D. Cooper. Effects of population density on individual growth of brown trout in streams. Ecology 80 (3): 941-956. Doi: 10.1890/0012-9658(1999)080[0941:EOPDOI]2.0.CO;2.
Jennings, C.A., E.W. Dilts, J.L. Shelton Jr., and R.C. Peterson. 2010. Fine sediment affects on survival to emergence of robust redhorse. Environmental Biology of Fishes 87: 43-53. Doi:10.1007/s10641-009-9561-9.
Jennings, M.J., J.E. Claussen, and D.P. Philipp. 1996. Evidence for heritable preference for spawning habitat between two walleye populations. Transactions of the American Fisheries Society 125: 978-982.
Jennings, M.J., and D.P. Philipp. 1994. Biotic and abiotic factors affecting survival of early life history intervals of a stream-dwelling sunfish. Environmental Biology of Fishes 39: 153-159/
Jensen, A.J., B. Finstad, P. Fiske, N.A. Hvidsten, A.H. Rikardsen, and L. Saksgard. 2012. Timing of smolt migration in sympatric populations of Atlantic salmon (Salmo salar), brown trout (Salmo trutta), and Arctic char (Salvelinus alpinus). Canadian Journal of Fisheries and Aquatic Sciences 69 (4): 711-723. Doi: 10.1139/F2012-005.
Jensen, A.J., and B.O. Johnsen. 1999. The functional relationship between peak spring floods and survival and growth of juvenile Atlantic salmon (Salmo salar) and brown trout (Salmo trutta). Functional Ecology 13: 778-785. Doi: 10.1046/j.1365-2435.1999.00358.x.
Jensen, A.J., B.O. Johnsen, and L.P. Hansen. 1989. Effects of river flow and water temperature on the upstream migration of adult Atlantic salmon Salmo salar L. in the River Vefsna, northern Norway. Pages 140-146 in: E. Brannon and B. Jonsson, editors. Salmonid migration and distribution. School of Fisheries, University of Washington, Seattle.
Jensen, D.W., E.A. Steel, A.H. Fullerton, and G.R. Pess. 2009. Impact of fine sediment on egg-to-fry survival of Pacific salmon: a meta-analysis of published studies. Rev. Fish. Sci. 17 (3): 348-359. Doi: 10.1080/10641260902716954.
Jensen, T., and J.C. Vokoun. 2013. Using multistate occupancy estimation to model habitat use in difficult-to-sample watersheds: bridle shiner in a low-gradient swampy stream. Canadian Journal of Fisheries and Aquatic Sciences 70 (10): 1429-1437. Dx.doi.org/10.1139/cjfas-2013-0011.
Jessop, B.M. 2003. Annual variability in the effects of water temperature, discharge, and tidal stage on the migration of American eel elvers from estuary to river. Pages 3-16 in: D.A. Dixon, editor. Biology, management, and protection of catadromous eels. American Fisheries Society, Symposium 33, Bethesda, MD.
Jewitt, GP.W., D.C. Weeks, G.L. Heritage, and A.H.M. Gorgens. 2001. Modelling abiotic-biotic links in the rivers of the Kruger National Park, Moumulanga, South Africa. Pages 77-90 in: Hydro-Ecology: Linking Hydrology and Aquatic Ecology (Proc. Birmingham, UK, Workshop, July 1999). IAHS, Wallingford.
Jiang, X., A. Arthington, and L. Changming. 2010. Environmental flow requirements of fish in the lower reach of the Yellow River. Water International 35: 3 Jansson, R., C. Nilsson, and B. 81-396.

Jirka, K.J., and J. Homa, Jr. 1990. Development and preliminary evaluation of suitability index curves for juvenile brook trout. Rivers 1 (3): 207217.

Johengen, T.H., B.A. Biddanda, and J.B. Cotner. 2008. Stimulation of Lake Michigan plankton metabolism by sediment resuspension and river runoff. J. Great Lakes Res. 34 (2): 213-227. Doi: 10.3394/0380-1330(2008)34[213:SOLMPM]2.0.CO;2.

John, K.R. 1963. The effect of torrential rain on the reproductive cycle of Rhinichthys osculus (Girard) in the Chiricahua Mountains, Arizona. Copeia 1963: 286-291.

Johnson, B.L., and C.A. Jennings. 1998. Habitat associations of small fishes around islands in the upper Mississippi River. North American Journal of Fisheries Management 18: 327-336. Doi:10.1577/1548-8675(1998)018<0327:HAOSFA>2.0.CO;2.
Johnson, B.L., W.B. Richardson, and T.J. Naimo. 1995. Past, present, and future concepts in large river ecology. BioScience 45 134-141.
Johnson, B.R., K.M. Fritz, K.A. Blocksom, and D.M. Walters. 2009. Larval salamanders and channel geomorphology are indicators of hydrologic permanence in forested headwater streams. Ecol. Ind. 9 (1): 150-159.
Johnson, C.A., and R.J. Naiman. 1987. Boundary dynamics at the aquatic-terrestrial interface: the influence of beaver and geomorphology. Landsc. Ecol. 1 (1): 45-57. Doi:10.1007/BF02275265.
Johnson, C.E., and R.A. Kennon. 2007. Habitat use of the shoal bass Micropterus cataractae, in an Alabama stream. Journal of Freshwater Ecology 22: 493-498.
Johnson, C.J., S.E. Nielsen, E.H. Merrill, T. McDonald, and M. Boyce. 2006. Resource selections functions based on use-availability data: theoretical motivation and evaluation methods. Journal of Wildlife Management 70: 347-357. Doi: 10.2193/0022-541X(2006)70[347-RSFBOU]2.0.CO;2.
Johnson, D.H. 1980. The comparison of usage and availability measurements for evaluating resource preference. Ecology 69: 125-134.
Johnson, E.L., C.C. Caudill, M.L. Keefer, T.S. Clabough, C.A. Peery, and M.A. Jepson. 2012. Movement of radio-tagged adult Pacific lampreys during a large-scale fishway velocity experiment. Transactions of the American Fisheries Society 141 (3): 571-579. Doi: 10.1080/00028487.2012.683468.
Johnson, F.H. 1961. Walleye egg survival during incubation on several types of bottom in Lake Winnibigoshish, Minnesota, and connecting waters. Transactions of the American Fisheries Society 90: 312-322.
Johnson, G.E., W.H. Pearson, S.L. Southard, and R.P. Mueller. 2012. Upstream movement of juvenile coho salmon in relation to environmental conditions in a culvert test bed. Transactions of the American Fisheries Society 141 (6): 1520-1531. Doi: 10.1080/00028487.2012.699013.
Johnson, I.W., C.R.N. Elliott, and A. Gustard. 1994. Data requirements and collection procedures for application of the Instream Flow Incremental Methodology in the UK. Institute of Hydrology: Wallingford.
Johnson, I.W., C.R.N. Elliott, A. Gustard, and A.T. Newton. 1993. River Allen instream flow requirements, pp. 5.15-5.21 in: Proceedings of British Hydrological Society Fourth National Hydrological Symposium, British Hydrological Society, Cardiff.
Johnson, I.W., C.R.N. Elliott, and A. Gustard. 1995. Modeling the effect of groundwater abstraction on salmonid habitat availability in the River Allen, Dorset, England. Regulated Rivers: Research & Management 10: 229-238.
Johnson, I.W., and F.M. Law. 1995. Computer models for quantifying the hydro-ecology of British rivers. J. CIWEM 9: 290-297.
Johnson, J.H. 2008. Seasonal habitat use of brook trout and juvenile Atlantic salmon in a tributary of Lake Ontario. Northeastern Naturalist 15: 363-374.
Johnson, J.H., and K.A. Douglas. 2009. Diurnal stream habitat use of juvenile Atlantic salmon, brown trout and rainbow trout in winter. Fisheries Management and Ecology 16: 352-359.
Johnson, J.H., and D.S. Dropkin. 1996. Seasonal habitat use by brook trout, Salvelinus fontinalis (Mitchill), in a second-order stream. Fisheries Management and Ecology 3: 1-11.
Johnson, J.H., D.S. Dropkin, and P.G. Schaffer. 1992. Habitat use by a headwater stream fish community in north-central Pennsylvania. Rivers 3 (2): 69-79.
Johnson, J.H., and P.A. Kucera. 1985. Summer-autumn habitat utilization of subyearling steelhead trout in tributaries of the Clearwater River, Idaho. Canadian Journal of Zoology 63: 2283-2290.
Johnson, J.H., C.C. Nack, and J.E. McKenna, Jr. 2010. Migratory salmonid redd habitat characteristics in the Salmon River, New York. Journal of Great Lakes Research 36: 387-392.
Johnson, M.F., and S.P. Rice. 2014. Animal perception in gravel-bed rivers: scales of sensing and environmental controls on sensory information. Canadian Journal of Fisheries and Aquatic Sciences 71 (6): 945-957. Doi: 10.1139/cjfas-2013-0474.
Johnson, N.S., and R.M. Adams. 1988. Benefits of increased streamflow: the case of the John Day River steelhead fishery. Water Resources Research 24: 1839-1846.
Johnson, P.M. 2001. Habitat associations and drought responses of freshwater mussels in the lower Flint River basin. Master’s thesis, University of Georgia, Athens. 114 pp.
Johnson, R.L., S.C. Blumenshine, and S.M. Coghlan. 2006. A bioenergetic analysis of factors limiting brown trout growth in an Ozark tailwater river. Environmental Biology of Fishes 77 (2): 121-132. Doi: 10.1007/s10641-006-9059-7.
Johnson, S.C., R. Burgess, and W. Kaemmerer. 1976. Forest overstory vegetation and environment on the Missouri River floodplain in North Dakota. Ecological Monographs 46 (1): 59-84.
Johnson, S.L., and A.P. Covich. 2000. The importance of night-time observations for determining habitat preferences of stream biota. Regulated Rivers: Research and Management 16: 91-99.
Johnson, S.L., J.D. Rodgers, M.F. Solazzi, and T.E. Nickelson. 2005. Effects of an increase in large wood on abundance and survival of juvenile salmonids (Oncorhynchus spp.) in an Oregon coastal stream. Canadian Journal of Fisheries and Aquatic Sciences 62 (2): 412-424.
Johnson, S.L., F.J. Swanson, G.E. Grant, and S.M. Wondzell. 2000. Riparian forest disturbances by a mountain flood – the influence of floated wood. Hydrol. Process. 14 (16-17): 3031-3050. Doi: 10.1002/1099-1085(200011/12)14:16/17<3031::AID-HYP133>3.0.CO;2-6.
Johnson, T.H. 1985. Density of steelhead parr for mainstem rivers in western Washington during the low flow period, 1984. Washington State Department of Game, Fishery Management Division 856, Olympia.