Instream Flow Council Instream flow and stream ecology literature OctoberApril 104, 2016 hb

Instream Flow Council – Instream flow and stream ecology literature – OctoberApril 104, 2016 - HB

Aadland, Luther P. 1993. Stream habitat types: their fish assemblages and relationship to flow. North American Journal of Fisheries Management 13 (4): 790-805.
Aadland, L.P., C.M. Cook, M.T. Negus, H.G. Drewes, and C.S. Anderson. 1991. Microhabitat preferences of selected stream fishes and a community-oriented approach to instream flow assessments. Section of Fisheries, Minnesota Department of Natural Resources, St. Paul, MN.
Aadland, L., and A. Kuitunen. 2006. Habitat suitability criteria for stream fishes and mussels of Minnesota. Minnesota Department of Natural Resources, Special Publication 162, St. Paul.
Aadland, L., C. Waltner, M.T. Negus, H.G. Drewes, and C.S. Anderson. 1989. Microhabitat criteria for selected stream fishes and methodological considerations for instream flow studies in Minnesota. Minnesota Department of Natural Resources, Section of Fisheries Technical Report 1987-1989: report to the Legislative Commission on Minnesota Resources, St. Paul.
Aarestrup, K., C. Nielsen, and A. Koed. 2002. Net ground speed of downstream migrating radio-tagged Atlantic salmon (Salmo salar L.) smolts in relation to environmental factors. Hydrobiologia 483: 95-102.
Aarts, B.G.W., F.W.B. Van den Brink, and P.H. Nienhuis. 2004. Habitat loss as the main cause of the slow recovery of fish faunas of regulated large rivers in Europe: the transversal floodplain gradient. River Research and Applications 20 (1): 3-23. Doi:10.1002/rra.720.
Aarts, G., J. Fieberg, S. Brasseur, and J. Matthiopoulos. 2013. Qualntifying the effect of habitat availability on species distributions. Journal of Animal Ecology 82: 1135-1145.
Aarts, G., M. MacKenzie, B. McConnell, M. Fedak, and J. Matthiopoulos. 2008. Estimating space-use and habitat preferences from wildlife telemetry data. Ecography 31: 140-160.
Aass, P., P.S. Nielsen, and A. Braband. 1989. Effect of river regulation on the structure of a fast-growing brown trout (Salmo trutta) population. Regulated Rivers: Research and Management 3: 256-266.
Abatzoglou, J.T., R. Barbero, J.W. Wolf, and Z. Holden. 2014. Tracking interannual streamflow variability with drought indices in the U.S. Pacific Northwest. J. Hydrometeor. 15: 1900-1912. Doi: 10.1175/JHM-D-13-0167.1.
Abbe, T.B., and D.R. Montgomery. 1996. Large woody debris jams, channel hydraulics and habitat formation in large rivers. Regulated Rivers 12: 201-221.
Abe, T., and F. Nakamura. 1999. Effects of experimental removal of woody debris on channel morphology and fish habitats. Ecol. Civil. Eng. 2: 179-190. [in Japanese with English abstract]
Achord, S., P.S. Levin, and R.W. Zabel. 2003. Density dependent mortality in Pacific salmon: the ghost of impacts past? Ecology Letters 6: 335-342.
Ackerman, J.D. 1999. Effect if velocity on the filter feeding of dreissenid mussels (Dreissena polymorpha and Dreissena bugensis): implications for trophic dynamics. Can. J. Fish. Aquat. Sci. 56: 1551-151.
Acosta, C.A., and S.A. Perry. 2001. Impact of hydropattern disturbance on crayfish population dynamics in the seasonal wetlands of Everglades National Park, USA. Aquatic Conservation – Marine and Freshwater Ecosystems 11: 45-57.
Acreman, M.C. 1998. Principles of water management for people and the environment. Pages 25-48 in: A. deShirbinin and V. Dompka, editors, Water and Population Dynamics. American Association for the Advancement of Science, New York.
Acreman, M.C. 2005. Linking science and decision-making: features and experience from environmental river flow-setting. Environmental Modelling and Software 20: 99-109.
Acreman, M.C., B. Adams, B. Birchall, and B. Connorton. 2000. Does groundwater abstraction cause degradation of rivers and wetlands? Journal of the Chartered Institution of Water and Environmental Management 14 (3): 200-206.
Acreman, M., J. Aldrick, C. Binnie, et al. 2009. Environmental flows from dams: the Water Framework Directive. Proc. ICE Eng. Sustain. 2: 13-22.
Acreman, M., A.H. Arthington, M.J. Colloff, C, Couch, N.D. Crossman, F. Dyer, I. Overton, C.A. Pollino, M.J. Stewardson, and W. Young. 2014. Environmental flows for natural, hybrid, and novel riverine ecosystems in a changing world. Frontiers in Ecology and the Environment 12 (8): 466-473. Doi: 10.1890/130134
Acreman, M., and M.J. Dunbar. 2004. Defining environmental river flow requirements: a review. Hydrology and Earth System Sciences 8 (5): 861-876.
Acreman, M., M. Dunbar, J. Hannaford, O. Mountford, P. Wood, N. Holmes, I. Cowx, R. Noble, C. Extence, J. Aldrick, J. King, A. Black, and D. Crookal. 2008. Developing environmental standards for abstractions from UK rivers to implement the EU Water Framework Directive. Hydrological Sciences Journal 53: 1105-1120.
Acreman, M.C., F. Farquharson, M.P. McCartney, C.A. Sullivan, K. Campbell, N. Hodgson, J. Morton, D. Smith, M. Birley, D. Knott, J. Lazenby, R. Wingfield, and E. Barber. 2000. Managed flood releases from reservoirs: issues and guidance. Centre for Ecology and Hydrology, Department of International Development, and World Commission on Dams. Wallingford, UK.
Acreman, M.C., and A.J. D. Ferguson. 2010. Environmental flows and the European Water Framework Directive. Freshwater Biology 55 (1): 32-48
Acreman, M., I. Overton, J. King, P. Wood, M. Dunbar, E. Kendy, and W. Young. 2014. The changing role of eco-hydrological science in guiding environmental flows. Hydrol. Sci. J. 59: 433-450.
Acreman, M.C., R. Riddington, and D.J. Booker. 2003. Hydrological impacts of floodplain restoration: a case study of the River Cherwell, UK. Hydrology and Earth Systems Science 7 (1): 75-85. Doi: 10.5194/hess-7-75-2003.
Acuna, V., T. Datry, J. Marshall, D. Barcelo, C.N. Dahm, A. Ginebreda, G. McGregor, S. Sabater, K. Tockner, and M.A. Palmer. 2014. Why should we care about temporary waterways? Science 343 (6175): 1080-1081. Doi: 10.1126/science.1246666.
Acuna, V., A. Giorgi, I. Munoz, et al. 2007. Meteorological and riparian influences on organic matter dynamics in a forested Mediterranean stream. Journal of the North American Benthological Society 26: 54-69.
Adams, J.B., G.C. Bate, T.D. Harrison, P. Huizinga, S. Taljaard, L. van Niekerk, E.E. Plumstead, A.K. Whitfield, and T.H. Wooldridge. 2002. A method to assess the freshwater inflow requirements of estuaries and application to the Mtata Estuary, South Africa. Estuaries 25 (6B): 1382-1393.
Adams, J.B., W.T. Knoop, and G.C. Bate. 1992. The distribution of estuarine macrophytes in relation to freshwater. Botanica Marina 35: 69-75.
Adams, J.B. and M.M.B. Talbot. 1992. The influence of river impoundment on the estuarine seagrass Zostera capensis Setchall. Botanica Marina 35: 69-75.
Adams, K.N., and A.M. Fowler. 2006. Improving empirical relationships for predicting the effect of vegetation change on annual water yield. Journal of Hydrology 32: 90-115.
Adams, N.J., D.R. Barton, D.R. Cunjak, R.A. Power, and S.C. Riley. 1988. Diel patterns of activity and substrate preference in young arctic char from the Koroc River, northern Quebec. Canadian Journal of Zoology 66: 2500-2502.
Adams, S.B., and M.L. Warren, Jr. 2005. Recolonization by warmwater fishes and crayfishes after severe drought in upper coastal plain hill streams. Transactions of the American Fisheries Society 134: 1173-1192.
Adams, S.B., M.L. Warren, Jr., and W.R. Haag. 2004. Spatial and temporal patterns of fish assemblages of upper coastal plain streams, Mississippi, USA. Hydrobiologia 528: 45-61.
Adams, S.R., J.J. Hoover, and K.J. Killgore. 1999. Swimming endurance of juvenile pallid sturgeon, Scaphirhynchus albus. Copeia 1999: 802-807.
Adams, S.R., J.J. Hoover, and K.J. Killgore. 2000. Swimming performance of the Topeka shiner (Notropis topeka) an endangered midwestern minnow. American Midland Naturalist 144: 178-186.
Adams, W.M. 1992. Wasting the Rain: Rivers, People, and Planning in Africa. Earthscan Publications, London.
Addley, C., G.K. Clipperton, T. Hardy, and A.G.H. Locke. 2003. South Saskatchewan River Basin, Alberta, Canada – Fish habitat suitability criteria (HSC) curves. Alberta Fish and Wildlife Division, Alberta Sustainable Resource Development, Edmonton, AB.

Addley, R.C. 1993. A mechanistic approach to modeling habitat needs of drift-feeding salmonids. Master’s thesis, Department of Civil and Environmental Engineering, Utah State University, Logan, Utah.

Aebischer, N.J., P.A. Robertson, and R.E. Kenward. 1993. Compositional analysis of habitat use from animal radio-tracking data. Ecology 74: 1313-1325.
Agostinho, A.A., L.C. Gomes, S. Verissimo, and E.K. Okada. 2004. Flood regime, dam regulation and fish in the Upper Parana River: effects on assemblage attributes, reproduction and recruitment. Reviews in Fish Biology and Fisheries 14: 11-19.
Agostinho, A.A., L.C. Gomes, and M. Zalewski. 2001. The importance of floodplains for the dynamics of fish communities of the upper river Parana. Ecohydrology & Hydrobiology 1: 209-217.
Aguilar, J.P. 2009. Historic changes of ecologically relevant hydrologic indices in unregulated Kansas streams. Doctoral dissertation. Kansas State University, Manhattan.
Ahearn, D.S., R.W. Sheibley, and R.A. Dahlgren. 2005. Effects of river regulation on water quality in the lower Mokelumne River, California. River Research and Applications 21: 651-670.
Ahearn, D.S., J.H.. Viers, J.F. Mount, and R.A. Dahlgren. 2006. Priming the productivity pump: flood pulse driven trends in suspended algal biomass distribution across a restored floodplain. Freshwater Biol. 51: 1417-1433.
Ahmad, R., F.N. Scatena, and A. Gupta. 1993. Morphology and sedimentation in Caribbean montane streams: examples from Jamaica and Puerto Rico. Sedimentary Geology 85: 157-169.

Ahmadi-Nedushan, B., A. St. Hilaire, M. Berube, E. Robichaud, N. Thiemonge, and B. Bobee. 2006. A review of statistical methods for the evaluation of aquatic habitat suitability for instream flow assessment. River Research and Applications 22: 503-523. Doi: 10.1111/j.1365-2427.2009.02181.x.

Ahmadi-Nedushan, B., A. St. Hilaire, M. Berube, T.B.M.J. Ouarda, and E. Robichaud. 2008. Instream flow determination using a multiple input fuzzy-based rule system: A case study. River Research and Applications 24: 279-292.
Aho, J.M., Anderson, C.S., and Terrell, J.W. 1986. Habitat suitability index models and instream flow suitability curves: redbreast sunfish. Washington, D.C.: U.S. Fish and Wildlife Service (Biological Report 82 [10.119]).
Ainsworth, L.M., R. Routledge, and J. Cao. 2011. Functional data analysis in ecosystem research: the decline of Oweekeno Lake sockeye salmon and Wannock River flow. Journal of Agricultural, Biological and Environmental Statistics 16: 282-300. Doi10.1007/s13253-010-0049-z.
Alabaster, John S. 1970. River flow and upstream movement and catch of migratory salmonids. Journal of Fish Biology 2: 1-13.
Aladin, N.V., and W.D. Williams. 1993. Recent changes in the biota of the Aral Sea, Central Asia. Verhandlungen der Internationalen Vereinigun fur theoretische und angewundie Limnologie 25: 790-792.
Albanese, B., P.L. Angermeier, and S. Dorai-Raj. 2004. Ecological correlates of fish movement in a network of Virginia streams. Canadian Journal of Fisheries and Aquatic Sciences 61: 857-869.
Alber, M. 2002. A conceptual model of estuarine freshwater inflow management. Estuaries 25 (6B): 1246-1261.
Alber, M., and J.E. Sheldon. 1999. Use of a date-specific method to examine variability in the flushing times of Georgia estuaries. Estuaries, Coastal and Shelf Science 49: 469-482.
Albertson, L.K., and D.C. Allen. 2015. Meta-analysis: abundance, behavior, and hydraulic energy shape biotic effects on sidement transport in streams. Ecology 96 (5): 1329-1339.
Albertson, P.N., and L.J. Torak. 2002. Simulated effects of ground-water pumpage on stream-aquifer flow in the vicinity of federally protected species of freshwater mussels in the lower Apalachicola-Chattahoochee-Flint River Basin (Subarea 4), southeastern Alabama, northwestern Florida, and southwestern Georgia. U.S. Geological Survey Water Investigations Report 02-4016.
Alcamo, J., P. Doell, T. Henrichs, F. Kaspar, B. Lehner, T. Roesch, and S. Siebert. 2003. Global estimates of water withdrawals and availability under current and future “business-as-usual” conditions. Hydrological Sciences Journal 48: 339-348.
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Alcamo, J., C. Vorosmarty, R.J. Naiman, D. Lettenmaier, and C. Pahl-Wostl. 2008. A grand challenge for freshwater research: understanding the global water system. Environmental Research Letters 3: 1-6.
Al-Chokhachy, R., and P. Budy. 2007. Summer microhabitat use of fluvial bull trout in eastern Oregon streams. North American Journal of Fisheries Management 27 (4): 1068-1081.
Al-Chokhachy, R., and B.B. Roper. 2010. Different approaches to habitat surveys can impact fisheries management and conservation decisions. Fisheries 35 (10): 476-488.
Al-Chokhachy, R., B.B. Roper, and E.K. Archer. 2010. Evaluating the status and trends of physical stream habitat in headwater streams within the interior Columbia River and upper Missouri River basins using an index approach. Transactions of the American Fisheries Society 139 (4): 1041-1059. Doi: 10:1577/T08-221.1.
Al-Chokhachy, R., B.B. Roper, T. Bowerman, and P. Budy. 2010. A review of bull trout habitat associations and exploratory analyses of patterns across the interior Columbia River basin. North American Journal of Fisheries Management 30 (2): 464-480. Doi:10.1577/M09-034.1.
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Alexander, C.A.D., C.N. Peters, D.R. Marmorek, and P. Higgins. 2006. A decision analysis of flow management experiments for Columbia River mountain whitefish (Prosopium williamsoni) management. Canadian Journal of Fisheries and Aquatic Sciences 63 (5): 1142-1156.
Alexander, H.D., and K.H. Dunton. 2002. Freshwater inundation effects on emergent vegetation of a hypersaline salt marsh. Estuaries 25 (6B): 1426-1435.
Alexander, J.S., R.B. Zelt, and N.J. Schaepe. 2010. Hydrogeomorphic and hydraulic habitats of the Niobrara River, Nebraska – with special emphasis on the Niobrara National Scenic River. U.S. Geological Survey Scientific Investigations Report 2010-5141. 62 pp.
Alexander, R.B., E.W. Boyer, R.A. Smith, and G.E. Schwarz. 2007. The role of headwater streams in downstream water quality. Journal of the American Water Resources Association 43: 41-59.
Alexander, R.B., R.A. Smith, and G.E. Schwarz. 2000. Effects of stream channel size on the delivery of nitrogen to the Gulf of Mexico. Nature 403:758-761.
Alexiades, A.V., M.M. Peacock, and R. Al-Chokhachy. 2012. Movement patterns, habitat use, and survival of Lahontan cutthroat trout in the Truckee River. North American Journal of Fisheries Management 32 (5): 974-983. Doi: 10.1080/02755947.2012.711272.
Alfredsen, K. 1997. A modelling system for estimation of impacts on fish habitat. Page 6 in: 27^th International Association for Hydraulic Research Congress: Water for a changing society. IAHR, San Francisco. Pp. 883-889.

Alfredsen, K., P. Borsanyi, A. Harby, H.-P. Fjeldstad, and S.-E. Wersland. 2004. Application of habitat modelling in river rehabilitation and artificial habitat design. Hydroecologie Appliquee 14 (1): 105-117.

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Allen, M.A. 2000. Seasonal microhabitat use by juvenile spring Chinook salmon in the Yakima River basin, Washington. Rivers 7 (4): 314-332.
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Allibone, R.M., and C.R. Townsend. 1997. Distribution of four recently discovered galaxiid species in the Taieri River, New Zealand: the role of microhabitat. Journal of Fish Biology 51: 1235-1246

Allison, S.K. 1996. Recruitment and establishment of salt marsh plants following disturbance by flooding. American Midland Naturalist 136: 232-247.
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