kdsB
3-deoxy-D-manno-octulosonate cytidylyltransferase
|
NTHI0068
|
HI0058
|
HS_0658
|
HD0334
|
lpxK
tetraacyldisaccharide-1-P 4'-kinase
|
NTHI0069
|
HI0059
|
HS_0656
|
HD0217
|
msbA
Lipid A ABC transporter, ATP-binding protein
|
NTHI0072
|
HI0060
|
HS_1021
|
HD1630
|
msbB
lipid A biosynthesis (kdo)2-(lauroyl)-lipid IVA acyltransferase
|
NTHI0296
|
HI0199
|
HS_1202
|
HD0404
|
lgtC
glycosyl transferase
repeats?
|
NTHI0365
GACA repeated 10 times in frame
|
HI0258
GACA repeated 22 times in frame just after start codon
|
HS_0636 lob2D
CAGT repeated 19 times in the middle of the CDS
|
HD1090
no repeats
|
orfM
Xanthosine triphosphate pyrophosphatase
|
NTHI0366
|
HI0260
|
HS_0125
|
HD1348
|
kdkA
3-deoxy-D-manno-octulosonic acid kinase,
|
NTHI0367
|
HI0260.1
|
no
|
HD1101
|
opsX/rfaC
ADP-heptose:LPS heptosyltransferase I
|
NTHI0368
|
HI0261
|
HS_1611
lipopolysaccharide heptosyltransferase-1
|
HD0445
|
lpt6
phosphorylethanolamine transferase
|
NTHI0383
|
HI0275
|
HS_0234
|
no
|
galE
UDP-glucose 4-epimerase
|
NTHI0471
|
HI0351
|
HS_0789
|
HD0829
|
lic3A
alpha-2,3-sialyltransferase
|
NTHI0472
CAAT repeated 18 times in frame
|
HI0352
|
no
|
no
|
possible acetyltransferase
|
NTHI0512
AGCA repeated 8 times in frame
|
HI0391
no repeats
|
HS_0553
no repeats
|
no
|
waaQ
ADP-heptose:LPS heptosyltransferase III
|
NTHI0649
|
HI0523
|
no
|
HD1202
|
lic2A
UDP galactose lipooligosaccharide galactosyltransferase
|
NTHI0677
CAAT repeated 14 times in frame
|
HI0550
CAAT repeated 21 times in middle of CDS
|
HS_0637 lob2A
TGAT repeated 36 times in 300 bases upstream of CDS start
|
Top hit is to lgtB HD0472
no repeats
|
kdtA
3-deoxy-d-manno-octulosonic-acid transferase
|
NTHI0772
|
HI0652
|
HS_1590
|
HD0454
|
lgtF
UDP-glucose--Lipooligosaccharide glucosyltransferase
|
NTHI0773
|
HI0653
|
HS_0291
|
HD1201
|
lpxH
UDP-2,3 diacylglucosamine hydrolase
|
NTHI0892
|
HI0735
|
HS_0498
|
HD1938
|
manB phosphomannomutase
|
NTHI0899
|
HI0740
|
HS_1670
|
HD1507
|
lex2B
UDP-glucose--lipooligosaccharide glucosyltransferase
|
NTHI0913
this is a family 25 glycosyltransferase
|
top hit is HI1697
a family 25 glycosyltransferase
|
HS_0638 lob1 glycosyltransferase, family 25
|
top hit is HD1721
a family 25 glycosyltransferase
|
lic2B
glycosyltransferase lpsA homolog
|
NTHI0926
|
HI0765
|
HS_0637 lob2A is the top hit
|
HD0472 lgtB is the top hit
|
galU
glucosephosphate uridylyltransferase
|
NTHI0976
|
HI0812
|
HS_1117
|
HD1431
|
lic3A2
CMP-neu5Ac--lipooligosaccharide alpha 2-3 sialyltransferase
|
NTHI1034
CAAT repeated 18 times in frame
|
HI0352
32 CAAT repeats and an earlier start are 317 bases upstream of the gene start. The earlier start and repeats are out of frame with the NTHI1034 gene.
|
no
|
no
|
rmlB/rffG
DTDP-glucose 4,6-dehydratase
|
NTHI1037
|
HI0873
|
HS_0707
|
HD0687
|
lpxD
UDP-3-O-(3-hydroxymyristoyl)-glucosamine N-acyltransferase
|
NTHI1082
|
HI0915
|
HS_0978
|
HD1189
|
predicted PE--lipooligosaccharide phosphorylethanolamine transferase
|
NTHI1180
|
HI1005
|
no
|
HD0371
|
lpxB
lipid-A-disaccharide synthetase
|
NTHI1220
|
HI1060
|
HS_1358
|
HD0846
|
lpxA
UDP-N-acetylglucosamine acetyltransferase
|
NTHI1222
|
HI1061
|
HS_1359
|
HD1187
|
predicted PE-lipooligosaccharide phosphorylethanolamine transferase
|
NTHI1224
|
HI1064
|
no
|
HD1598
|
rfaF
ADP-heptose--LPS heptosyltransferase II
|
NTHI1272
|
HI1105
|
HS_1612
|
HD0653
|
rfaD
ADP-L-glycero-D-mannoheptose-6-epimerase
|
NTHI1278
|
HI1114
|
HS_1613
|
HD1890
|
lpxC
UDP-3-0-(3-hydroxymyristoyl) N-acetylglucosamine deacetylase
|
NTHI1312
|
HI1144
|
HS_0364
|
HD0816
|
lpcA/gmhA phosphoheptose isomerase
|
NTHI1350
|
HI1181
|
HS_1238
|
HD1228
|
lgtA
N-acetylglucosamine glycosyltransferase
|
NTHI1474
|
HI1578
|
no
|
HD0466
|
kdsA
2-dehydro-3-deoxyphosphooctonate aldolase
|
NTHI1576
|
HI1557
|
HS_0946
|
HD0857
|
licD
lipopolysaccharide choline phosphotransferase
|
NTHI1594
|
HI1540
|
HS_1458
HS_0727 fragment
|
no
|
licC
CTP:phosphocholine cytidylyltransferase
|
NTHI1595
|
HI1539
|
HS_1459
|
no
|
licB
choline transporter
|
NTHI1596
|
HI1538
|
HS_1460
|
no
|
licA
phosphorylcholine kinase
|
NTHI1597
CAAT repeated 15 times in frame
|
HI1537
alternative start and CAAT repeated 17 times out of frame prior to the gene start
|
HS_1461
no repeats
|
C-terminal only HD1021
no repeats
|
htrB
lipid A biosynthesis lauroyl acyltransferase
|
NTHI1606
|
HI1527
|
HS_0575
|
HD1106
|
rfaE
ADP-heptose synthase
|
NTHI1607
|
HI1526
|
HS_0576
|
HD1182
|
mrsA Phosphomannomutase
|
NTHI1664
|
HI1337
|
HS_0730
|
HD0201
|
glycosyltransferase
|
NTHI1750
GACA repeated 14 times in frame
|
HI0258 is top hit
|
HS_0636 lob2D is top hit ~50% identity
|
HD1090?
no repeats
|
glycosyltransferase
|
NTHI1769
CCAA repeated 17 times out of frame
|
HI1386
CCAA repeated 16 times in 300 bases upstream of gene start
|
no
|
HD0375 is top hit
no repeats
|
neuA
acylneuraminate cytidylyltransferase
|
NTHI1891
|
HI1279
|
HS_0706
|
HD0685
|
Possible polysaccharide biosynthesis protein
|
NTHI1921
|
HI1244
|
no
|
HD1508
|
lsgF
lipopolysaccharide biosynthesis protein
|
NTHI2002
|
HI1695
|
no
|
HD0886
|
lsgE
lipopolysaccharide biosynthesis protein
|
NTHI2003
|
HI1696
|
no
|
HD0885
|
lsgD
lipopolysaccharide biosynthesis protein
|
NTHI2004
|
HI1697
|
no
|
HD0883
|
lsgC
lipopolysaccharide biosynthesis protein, putative
|
NTHI2005
|
HI1698
|
no
|
no
|
lsgB
lipopolysaccharide biosynthesis protein
beta-galactoside alpha-2,3-sialyltransferase
|
NTHI2006
|
HI1699
|
no
|
no
|
lsgA
lipopolysaccharide biosynthesis protein
|
NTHI2007
|
HI1700
HI0867
|
no
|
HD0882
|
rfe/mraY/wecA undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase
|
NTHI2025
|
HI1716
|
HS_0355
|
HD1844
|
