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Subject: Re: ORGLIST: Database of organic reactions



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Subject: Re: ORGLIST: Database of organic reactions
john michael wrote:

>


> those programs usually run in the thousands of dollars

> getthe merk index, its about 250.00 dollares on cd......


I've not played with the cd much, but you seem to be saying that

it covers reactions. Is this correct? Thanks for a reply.


Herb Hedgecock

Morehead State U

Morehead KY 40351

__________________


Date: Sun, 16 Jan 2000 00:54:15 MSK

From: "Valery Yuskovets"

Subject: ORGLIST: .sdf
Hi all.

does anybody know which programe i must use to open .sdf file with

list of chemical structures.

Valery.


__________________
Date: Sat, 15 Jan 2000 15:55:44 -0800 (PST)

From: Eugene Leitl

Subject: ORGLIST: .sdf
Valery Yuskovets writes:

> Hi all.

> does anybody know which programe i must use to open .sdf file with

> list of chemical structures.

> Valery.
Try CACTVS: http://www2.ccc.uni-erlangen.de/software/cactvs/
Or use BABEL to convert .sdf into something more palatable to the

software you use.

__________________
Date: Mon, 17 Jan 2000 02:21:30 -0500

From: Merlin

Subject: ORGLIST: Glaxo SmithKline
Well, a proposal raised two years ago may be a reality.
According to the New York Times & BBC, Glaxo & SmithKline Beecham will

merge.
Any comments?


Cheers!
--

George D. 'Merlin' McCallion, Research Chemist

Department of Anesthesiology

The Children's Hospital of Philadelphia

Post Office Box 143

Bala-Cynwyd, PA 19004-0143


Office: 1.215.590.6894

Fax: 1.215.590.4443

Email: medchem@home.com

__________________


Date: Tue, 18 Jan 2000 15:35:44 +0500

From: "Ilfir R. Ramazanov"

Organization: Institute of Petrochemistry and Catalysis,Ufa,Russia

Subject: ORGLIST: hand-made combines and distillators
Dear Orglist members,
Has anyone a experience to distillate (and separate) under vacuum

small quantities (0.5-2.0 ml) of liquid organic compounds. Yes, there

are many special columns but I haven't ones. I am interested in

hand-made apparatus without fine work. I'd like to hear your opinion.


Best regards,

Ilfir R. Ramazanov, Ph.D.,

Laboratory of Catalytic Synthesis,

Institute of Petrochemistry and Catalysis,

pr. Oktyabrya, 141,

Ufa, 450075, Russia.


mailto:elf@anrb.ru
Visit my homepage and find some QC software

http://members.tripod.com/~ChemELF


Visit our lab web page

http://organomet.cjb.net

__________________
Date: Tue, 18 Jan 2000 09:56:18 -0500 (EST)

From: Christopher Paul Borella

Subject: Re: ORGLIST: hand-made combines and distillators
Dear Ilfir,

The kulgaror (bulb to bulb distilation) in my opinion is the best

apparatus for distilling small quantuities under vacume, however it

normally requires specialized equipment. I have seen a couple of "home

made" versions though. The glasware is rather simple, and the heating

unit can be made from an old cannister coffee pot and the turning

mechanism can be made from many different things ranging from a old

windshield wiper mechanism to a rotovapor motor. I don't have the

specifics of how to put this together as all of ours are store bought, but

am willing to try to help whereever I can.


Regards,
Chris

_________________


Date: Tue, 18 Jan 2000 10:41:31 -0500 (EST)

From: Christopher Paul Borella

Subject: ORGLIST: Nomencalture problem
Dear list members,

I am having a real hard time coming up with chemical names for several new

compounds and would like to know if there are any powerfull auto naming

programs. The compounds are macrocyclic taxoids (joining the c-13 ond c-2

positions for those of you familier with the compounds), it is a

pentacyclic compound and I have already tried the auto naming features on

chemdraw and beilstein, and it is too complex for both of them. Any help

would be greatly appreciated.

Thanks,
Chris Borella

__________________


Date: Tue, 18 Jan 2000 18:58:55 +0200

From: Gianluca Sbardella

Organization: Universita' "La Sapienza" di Roma

Subject: ORGLIST: Synthesis of amidines...
Dear colleagues,

first of all I apologize for any crossposting.


I need to synthesyze a few acetamidines (above all

cyclopentylacetamidine and 2,6-difluorophenylacetamidine).

Do you have any experience or suggestion concerning this topic?
Thank you very much in advance,
Dr. Gianluca Sbardella, Ph.D.

Universita' degli studi di Roma "La Sapienza"

Dipartimento di Studi Farmaceutici

Rome - Italy

__________________
Date: Tue, 18 Jan 2000 10:17:17 -0800 (PST)

From: Kimberley Cousins

Subject: Re: ORGLIST: hand-made combines and distillators
I second the vote for Kugloror apparatus. It can be made from a couple of

ground glass joints (one inner, one outer), and a couple of pieces of

glass tubing using moderate glassblowing skills. Or, the glassware can be

purchase for not too much money from glassware vendors. The rotating

portion can be attached to a standard round bottom flask. I've used a sand

bath for heating and manual twirling during distillation (with 2 3-finger

clamps to hold the apparatus steady) for a really low tech solution.
Kimberley Cousins

Associate Professor of Chemistry

California State University, San Bernardino

5500 University Parkway

San Bernardino, CA 92407

(909)880-5391


kcousins@csusb.edu

http://chem.csusb.edu/~kcousins

__________________
From: Eugene Leitl

Date: Tue, 18 Jan 2000 13:51:59 -0800 (PST)

Subject: Re: ORGLIST: hand-made combines and distillators
Christopher Paul Borella writes:

> Dear Ilfir,

> The kulgaror (bulb to bulb distilation) in my opinion is the best
It's kugelrohr, btw. (Kugel=bulb, sphere. Rohr=tube, funnel).
Here's an illustration of an (expensive) commercial Kugelrohr unit:

http://www.jepbol.com/sect1/dist.html


The thing is useful for short-parth destillation of

high-molecular-weight products. It is no good for separations of low

molecular weight products. If you have to do any of this, I suggest

you take a look at blueprints of commercial micro and ultramicro

destillation and talk with your glassblower what he can build.

__________________


Date: Wed, 19 Jan 2000 12:04:17 +0200

From: zabicky@bgumail.bgu.ac.il (Jacob Zabicky)

Subject: Re: ORGLIST: Synthesis of amidines...
Hello Gianluca,
Possibly a Ritter-type process will do, treating the nitrile with dry HCl,

possibly in dry ethanol, followed by treatment with dry ammonia. I used the

method to prepare o-cyanophenylacetamide by applying water in the second

step.
All the best,


Jacob

x-x-x-x-x-x-x-x-x-x-x-x-x-x-x-x-x-x-x-x-x-x-x-x-x-x-x-x-x-x-x-x-x-x-x-x-x

Prof. Jacob Zabicky Tel. 972-7-6461271/6461062/6472754

Institutes for Applied Research Fax. 972-7-6472969

Ben-Gurion University of the Negev Private: POB 12366, Beer-Sheva 84863

POB 653, Beer-Sheva 84105, ISRAEL Tel. 972-7-6496792

http://profiler.bgu.ac.il/site/main.cfm

x-x-x-x-x-x-x-x-x-x-x-x-x-x-x-x-x-x-x-x-x-x-x-x-x-x-x-x-x-x-x-x-x-x-x-x-x

__________________
Date: Wed, 19 Jan 2000 12:04:19 +0200

From: zabicky@bgumail.bgu.ac.il (Jacob Zabicky)

Subject: Re: ORGLIST: hand-made combines and distillators
Hello Ilfir,
Two low-budget suggestions,
1) Use a GC with an ordinary column that gives a good separation and TCD,

make as big injections as you can, collecting your fractions from the

discharge port when you see them coming in the detector signals. In a few

hours you may finish the separation of many 50-100 microliter injections.


2) Build a poor-man molecular still, where the vessel containing your

sample is immersed in a constant temp. warm bath, say 40-50 C. At the top

of the still you should have a cold finger with a collection ampoule. Apply

a vacuum in the sub-torr range, and stop the operation every few hours to

collect in capillaries or other convenient containers whatever came off.
Good luck.
Jacob

x-x-x-x-x-x-x-x-x-x-x-x-x-x-x-x-x-x-x-x-x-x-x-x-x-x-x-x-x-x-x-x-x-x-x-x-x

Prof. Jacob Zabicky Tel. 972-7-6461271/6461062/6472754

Institutes for Applied Research Fax. 972-7-6472969

Ben-Gurion University of the Negev Private: POB 12366, Beer-Sheva 84863

POB 653, Beer-Sheva 84105, ISRAEL Tel. 972-7-6496792

http://profiler.bgu.ac.il/site/main.cfm

x-x-x-x-x-x-x-x-x-x-x-x-x-x-x-x-x-x-x-x-x-x-x-x-x-x-x-x-x-x-x-x-x-x-x-x-x

__________________
Date: Mon, 24 Jan 2000 13:38:08 +0100

From: Jonas Nilsson

Subject: ORGLIST: Varian->Bruker
How do I convert NMR-fid files from one format to another? Is there any free

software?

/jN
--

_____________________ _____________________

| Jonas Nilsson | | |

|Linkoping University | | Telephone |

| IFM | | --------- |

| Dept. of Chemistry | | work: +46-13-285690 |

| 581 83 Linkoping | | fax: +46-13-281399 |

| Sweden | | home: +46-13-130294 |

|_____________________| |_____________________|

__________________


From:

Subject: RE: ORGLIST: Varian->Bruker

Date: Mon, 24 Jan 2000 15:05:17 +0100
NUTS from AcornNMR will read most formats.

I have used it for reading both Varian and Bruker formats, both of which are

autodetected.

It can also do export.

There is a 30-day demo at http://www.acornnmr.com/

The registration can cost you from 100$ and up, depending on the level of

features you need (support, 2D-processing etc.).
Regards,

---------------------------------------

Thomas Hoeg-Jensen, Ph.D

Novo Nordisk A/S, Novo Alle 6BS.58

DK-2880 Bagsvaerd, Denmark

phone +45 44 42 13 01 fax +45 44 44 42 50

email tshj@novo.dk

__________________


Date: Mon, 24 Jan 2000 18:59:36 +0100

From: Jonas Nilsson

Subject: ORGLIST: Still problems. Varian->Bruker
Thank you for all your suggestions. However, MestRe-C cannot export (other than

AscII which doesn't load in WinNMR). And Nuts will not Export if not registered.

I would like to have an extern coversion program, which would take the Varian

files and converted them into Bruker/WinNMR format (any format loadable in

WinNMR would do).
The problem is still there. I can load and view my files (in for instance

MestRe-C) but I can't export/convert them.

Any suggestions?

/jN


--

_____________________ _____________________

| Jonas Nilsson | | |

|Linkoping University | | Telephone |

| IFM | | --------- |

| Dept. of Chemistry | | work: +46-13-285690 |

| 581 83 Linkoping | | fax: +46-13-281399 |

| Sweden | | home: +46-13-130294 |

|_____________________| |_____________________|
__________________
From: "Dr. Guillermo A. Morales"

Subject: ORGLIST: Announcing CombiChem Lab: A new website dedicated to Combinatorial Chemistry and High-Throughput Screening.

Date: Tue, 25 Jan 2000 02:15:43 -0500
My apologies if you receive this message multiple times.
I would like to announce the opening of CombiChem Lab. This site is intended

to provide free online information in the areas of Combinatorial Chemistry,

High-Throughput Screening, and other related topics.
This site is academic oriented. There are no specials, offers or ads of any

kind and I intend to keep it that way.


The site is still under construction. The combinatorial chemistry section is

half way finished. As soon as this section is complete I will work on the

High-Throughput Screening section. Since this is a one-person effort, it is

taking time to build the site.


Please come and visit the site at www.combichemlab.com
Any suggestions to improve the site are always welcome.
Thanks.
Guillermo A. Morales, Ph.D.

-----


"We can't solve problems by using the same kind of thinking

we used when we created them." -- Albert Einstein --

----

Guillermo A. Morales



E-mail: morales@combichemlab.com

__________________


Date: Tue, 25 Jan 2000 09:54:09 +0100

From: Luis Fernando Garcia Alles

Subject: ORGLIST: Chemicals suppliers
Dear people, my case is the following:

I am trying to look for potential commercially available sugars

(4-deoxyglucose, 1,5-anhydroglucitol, 3-, 4- and 6-deoxymannose and

L-Mannose). I know about one database where you can search compounds sold

by Aldrich, Sigma and Fluka. I've already tried here but I do not find some

of the compounds I am interested in. Does anybody know any other way/place

to look for such compounds?. Furhtermore, is there any place in the net

where I can place an "order" and wait for somebody to reply to my query??.

Is there any place for chemical compounds interchange between university

labs??.
I hope that I have explained properly my situation. I would like to thank

in advance to everybody, for reading this message and specially for

answering to my questions. Thank you


Luis Fernando Garc=EDa Alles, Ph.D.

Departement f=FCr Chemie und Biochemie

Universit=E4t Bern

Freiestrasse 3

CH-3012 Bern, Schweiz

Tel. ++41 (0)31/631 37 92

Fax ++41 (0)31/631 33 83=09

E-mail :garcia@ibc.unibe.ch

__________________
Date: Tue, 25 Jan 2000 14:35:10 +0530 (IST)

From: Dr T A Pathak


Subject: Re: ORGLIST: Chemicals suppliers
Dear Luis
PFanstiehl (Europe) Ltd. sells specialised carbohydrate products. You can

contact them at the following address:


Pfanstiehl House, 31 Pritchard drive

Davenham, Cheshire CW9 8HL, UK


Tel. +44 (0) 1606 331825, Fax. +44 (0) 1606 331826
e.mail: custserv@pfaneur.u-net.com
Good luck!
T. Pathak
-----------------------------------------------------------------------------

Dr. Tanmaya Pathak Tel: (020)-589 33 00

Organic Chemistry Division (Synthesis) 589 33 15/16

National Chemical Laboratory extn.2055/2073

Pune 411 008 (020)-589 31 53

Maharasthra Fax: (020)-589 31 53

India e.mail: pathak@ems.ncl.res.in

---------------------------------------------------------------------------

__________________
From: "Bozell, Joe"

Subject: RE: ORGLIST: Chemicals suppliers

Date: Tue, 25 Jan 2000 08:31:20 -0700
There is an annual publication called "Chemical Sources" that lists all

commercially availble chemicals and the companies that make them. It's

available in hard copy in many science libraries, and is also =

searchable on

line (for a fee) through many scientific databases.
good luck,
Joe Bozell

Senior Chemist

National Renewable Energy Laboratory

Golden, CO=20

USA

__________________


Date: Wed, 26 Jan 2000 14:40:20 +0800

From: HAN

Subject: ORGLIST: Chemical?
Dear Colleague,
Sorry to bother you.
I want to where could I purchase the chemical "cucurbituril" and how

about the price. If it is not commercially available, who know the

detailed synthetic procedure. I just have the liturature on its

synthesis (JACS 1981, 103, 7367), which improve the procedure of Ann

Chem 1905, 339, 1. In fact, Ph. D. thesis by N-Y Shih of U of Illinois

at Chicago, 1981 has the detailed procedure, however I could not access

it. Would you like to help me.
Thanks for your time!
Yours
BH HAN
====================================

Dr. Bao-Hang HAN

Department of Chemistry

Nankai University

94 Weijin Road

Tianjin 300071

CHINA
E-mail: han.nankai@263.net

bhhan@tjmail.com

====================================

__________________


From: "Victor Rodrigues"

Subject: ORGLIST: GC-MS

Date: Thu, 27 Jan 2000 18:07:06 -0200
Does anyone know any free program capable of reading GC-MS =

files with extension .MS??

Please answer to my personal e-mail: vicerj@mandic.com.br

__________________


From: "Yantao Chen"

Subject: ORGLIST:

Date: Fri, 28 Jan 2000 09:50:11 +0100
Dear Colleagues:
I have a question about how to get dried "Boron Trifluoride Etherate". Any

suggestion will be appreciated.


/Y. Chen
email: yanch@ifm.liu.se

__________________


From: "Yantao Chen"

Subject: ORGLIST: summary for the question

Date: Fri, 28 Jan 2000 11:10:24 +0100
Firstly I would like Drs. Frederic Denonne and Ian Newington who gave the

answers to my question. Here they are. Hopefully they are useful for some

one.

/Y. Chen


----- Original Message ----

1.
From: "Frederic Denonne"

Sent: Friday, January 28, 2000 10:23 AM

Subject: Re: ORGLIST:

> Distil it from calcium hydride.

>

> Hope this helps,



>

> --------------------------

> Frederic Denonne:


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