Instream Flow Council Instream flow and stream ecology literature OctoberApril 104, 2016 hb



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Pringle, C.M. 2000. Threats to US public lands from cumulative hydrologic alterations outside of their boundaries. Ecological Applications 10: 971-989.
Pringle, C.M. 2001. Hydrological connectivity and the management of biological reserves: a global perspective. Ecological Applications 11: 981-988.
Pringle, C.M. 2003. What is hydrological connectivity and why is it ecologically important? Hydrological Processes 17: 2685-2689.
Pringle, C.M., M.C. Freeman, and B.J. Freeman. 2000. Regional effects of hydrological alterations on riverine macrobiota in the New World: Tropical-temperate comparisons. BioScience 50: 807-823.
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Pringle, C.M., and T. Hamazaki. 1997. Effects of fishes on algal response to storms in a tropical stream. Ecology 78: 2432-2442.
Pritchard, A.L. 1936. Factors influencing the upstream spawning migration of the pink salmon, Oncorhynchus gorbuscha (Walbaum). J. Biol. Board Canada 2 (4): 383-389.
Pritchett, T., and M. Pyron. 2011. Fish assemblages respond to habitat and hydrology in the Wabash River, Indiana. River Research and Applications doi: 10.1002/rra.1528
Proga RA., and A.R. Mdeke 2002. Insect production from temporary and perennially flowing headwater streams in western Oregon. J. Freshwater Ecol. 17: 391-407.
Propst, D.L., and K.B. Gido. 2004. Responses of native and nonnative fishes to natural flow regime mimicry in the San Juan River. Transactions of the American Fisheries Society 133 (4): 922-931. Doi: 10.1577/T03-057.1
Propst, D.L., K.B. Gido, and J.A. Stefferud. 2008. Natural flow regimes, nonnative fishes, and native fish persistence in arid-land river systems. Ecological Applications 18 (5): 1236-1252. Doi: 10.1890/07-1489.1
Propst, D.L., and J.A. Stefferud. 1997. Population dynamics of Gila trout in the Gila River drainage of the south-western United States. J. Fish Biol. 51: 1137-1154. Doi:10.1111/j.1095-8649.1997.tb01132.x.
Prowse, T.D. 1994. Environmental significance of ice to streamflow in cold regions. Freshwater Biology 32: 241-259. Doi: 10.1111/j.1365-2427.1994.tb01124.x.
Prowse, T.D., F.J. Wrona, J.D. Reist, J.J. Gibson, J.E. Hobbie, L.M.J. Levesque, and W.F. Vincent. 2006. Climate change effects on hydroecology of arctic freshwater ecosystems. Ambio 35 (7): 347-358. Doi: 10.1577/0044-7447(2006)35[347:CCEOHO]2.0.CO;2
Ptolemy, R.A. 2001. Water use planning (WUP) Delphi durves. BC Ministry of Environment, Victoria, BC.
Ptolemy, R.A. 2013. Predictive models for differentiating habitat use of coastal cutthroat trout and steelhead at the reach and landscape level. North American Journal of Fisheries Management 33 (6): 1210-1220. Doi: 10.1080/02755947.2013.829140.
Puckett, K.J., and L.M. Dill. 1984. Cost of sustained and burst swimming to juvenile coho salmon (Oncorhynchus kisutch). Canadian Journal of Fisheries and Aquatic Sciences 41: 1546-1551.
Puckett, K.J., and L.M. Dill. 1985. The energetics of feeding territoriality in juvenile coho salmon (Oncorhynchus kisutch). Behaviour 92: 97111.
Puckridge, J.T., J. Costelloe, and J.R.W. Reid. 2010. Ecological responses to variable water regimes in arid zone wetlands: Coongie Lakes, Australia. Marine and Freshwater Research 61: 832-841.
Puckridge, J.T., F. Sheldon, K.F. Walker, and A.J. Boulton. 1998. Flow variability and the ecology of large rivers. Australian Journal of Marine and Freshwater Research 49: 55-72. Doi: 10.1071/MF94161.
Puckridge, J.T., K.F. Walker, and J. Costelloe. 2000. Hydrological persistence and the ecology of dryland rivers. Regulated Rivers: Research & Management 16: 385-402.
Pulwarty, R.S., and K.T. Redmond. 1997. Climate and salmon restoration in the Columbia River basin: the role and usability of seasonal forecasts. Bulletin of the American Meteorological Society 78: 381-397.
Purchase, C.F., and J.A. Hutchings. 2008. A temporally stable spatial pattern in the spawner density of a freshwater fish: evidence for an ideal despotic distribution. Canadian Journal of Fisheries and Aquatic Sciences 65 (3): 382-388.
Purseglove, J. 1988. Taming the Flood: History and Natural History of Rivers and Wetlands, Oxford University Press, Oxford.
Purtlebaugh, C.H., and M.S. Allen. 2010. Relative abundance, growth, and mortality of five age-0 estuarine fishes in relation to discharge of the Suwannee River, Florida. Transactions of the American Fisheries Society 139 (4): 1233-1246.
Pusey, B.J. 1998. Methods assessing the flow requirements of fish. Pages 66-105 in: A.H. Arthington and J.M. Zalucki (editors), Comparative Evaluation of Environmental Flow Assessment Techniques. Occasional Paper No. 27/98. Land and Water Resources Research and Development Corporation, Canberra, Australia.
Pusey, B.J., and A.H. Arthington. 2003. Importance of the riparian zone to the conservation and management of freshwater fish: a review. Marine and Freshwater Research 54: 1-16.
Pusey, B.J., A.H. Arthington, and M.J. Kennard. 2004. Hydrologic regime and its influence on broad-scale patterns of fish biodiversity in north-eastern Australian rivers. In: Proceedings of the 5th International Symposium on Ecohydraulics, 12th-17th September 2004, Madrid, Spain.
Pusey, B.J., A.H. Arthington, and M.G. Read. 1993. Spatial and temporal variation in fish assemblage structure in the Mary River, southeastern Queensland: the influence of habitat structure. Environmental Biology of Fishes 37: 355-380.
Pusey, B.J., M.J. Kennard, and A.H. Arthington. 2000. Discharge variability and the development of predictive models relating stream fish assemblage structure to habitat in northeastern Australia. Ecology of Freshwater Fish 9: 30-50.
Pyron, M., and T.E. Lauer. 2004. Hydrological variation and fish assemblage structure in the middle Wabash River. Hydrobiologia 525: 203-213.
Quammen, M.L., and C.P. Onuf. 1993. Laguna Madre: Seagrass changes continue decades after salinity reduction. Estuaries 16: 1163-1174.
Quinn, G.P., T.J. Hillman, and R. Cook. 2000. The response of macroinvertebrates to inundation in floodplain wetlands: a possible effect of river regulation. Regulated Rivers: Research and Management 16: 4469-477.
Quinn, J.M., and C.W. Hickey. 1990. The magnitude of the effects of substrate particle size, recent flooding, and catchment development on benthic invertebrates in 88 New Zealand rivers. New Zealand Journal of Marine and Freshwater Research 24: 411-427.
Quinn, J.W. and T.J. Kwak. 2003. Fish assemblage changes in an Ozark river after impoundment: a long-term perspective. Transactions of the American Fisheries Society 132 (1): 110-119.
Quinn, T.P. 2005. The behavior and ecology of Pacific salmon and trout. Bethesda, Maryland. American Fisheries Society and the University of Washington Press.
Quinn, T.P., and D.J. Adams. 1996. Environmental changes affecting migratory timing of American shad and sockeye salmon. Ecology 77 (4): 1151-1162.
Quinn, T.P., and G.B. Buck. 2001. Size- and sex-selective mortality of adult sockeye salmon: bears, gulls, and fish out of water. Transactions of the American Fisheries Society 130: 995-1005.
Quinn, T.P., D.M. Eggers, J.H. Clark, and H.B. Rich, Jr. 2007. Density, climate, and the processes of prespawning mortality and egg retention in Pacific salmon (Oncorhynchus spp.). Canadian Journal of Fisheries and Aquatic Sciences 64 (3): 574-582.
Quinn, T.P., A.P. Hendry, and L.A. Wetzel. 1995. The influence of life history trade-offs and the size of incubation gravels on egg size variation in sockeye salmon (Oncorhynchus nerka). Oikos 74: 425-438.
Quinn, T.P., S. Hodgson, and C. Peven. 1997. Temperature, flow, and the migration of adult sockeye salmon (Oncorhynchus nerka) in the Columbia River. Canadian Journal of Fisheries and Aquatic Sciences 54 (6): 13491360. Doi: 10.1139/f97-038.
Quinn, T.P., P. McGinnity, and T.E. Reed. 2016. The paradox of “premature migration” by adult anadromous salmonid fishes: patterns and hypotheses. Canadian Journal of Fisheries and Aquatic Sciences 73 (7): 1015-1030. Doi: 10.1139/cjfas-2015-0345
Quinn, T.P., and N.P. Peterson. 1996. The influence of habitat complexity and fish size on overwinter survival and growth of individually marked juvenile coho salmon (Oncorhynchus kisutch) in Big Beef Creek, Washington. Canadian Journal of Fisheries and Aquatic Sciences 53 (7): 15551564.
Quiros, R., and S. Cuch. 1989. The fisheries and limnology of the lower Plata Basin. Pp. 429-443 in: D.P. Dodge (ed.) Proceedings of the International Large Rivers Symposium. Can. Special Publ. Fish. Aquatic Sciences 106.
Quist, M.C., W.A. Hubert, and F.J. Rahel. 2004. Relations among habitat characteristics, exotic species, and turbid-river cyprinids in the Missouri River drainage of Wyoming. Transactions of the American Fisheries Society 133 (3): 727-742.
Quist, M.C., F.J. Rahel, and W.A. Hubert. 2005. Hierarchical faunal filters: an approach to assessing effects of habitat and nonnative species on native fishes. Ecology of Freshwater Fish 14: 24-39. Doi:10.1111/j.1600-0633.2004.00073.x.
Quist, M.C., J.S. Tillma, M.N. Burlingame, and C.S. Guy. 1999. Overwinter habitat use of shovelnose sturgeon in the Kansas River. Transactions of the American Fisheries Society 128 (3): 522-527.
Raabe, E.A., R.E. Edwards, C.C. Mcivor, J.W. Grubbs, and G.D. Dennis. 2007. Habitat and hydrology: assessing biological resources of the Suwannee River estuarine system. U.S. Geological Survey, Open-File Report 2007-1382, St. Petersburg, Florida.
Rabeni, C.F., and R.B. Jacobson. 1993. The importance of fluvial hydraulics to fish-habitat restoration in low-gradient alluvial streams. Freshwater Biology 29: 211-220.
Rabeni, C.F., and R.B. Jacobson. 1993. Geomorphic and hydraulic influences on the abundances and distribution of stream centrarchids in Ozark, USA streams. Polskie Archiwum Hydrobiologii 40: 87-99.
Rader, R.B. 1997. A functional classification of the drift: traits that influence invertebrate availability to salmonids. Canadian Journal of Fisheries and Aquatic Sciences 54: 1211-1234.
Rader, R.B., and T.A. Belish. 1999. Influence of mild to severe flow alterations on invertebrates in three mountain streams. Regulated Rivers: Research & Management 15: 353-363. Doi: 10.1002/(SICI)1099-1646(199907/08)15:4<353::AID-RRR551>3.0.CO;2-U.
Rahel, F.J., and J.D. Olden. 2008. Assessing the effects of climate change on aquatic invasive species. Conserv. Biol. 22: 521-533.
Raibley, P.T., K.S. Irons, T.M. O’Hara, and K.D. Blodgett. 1997. Winter habitats used by largemouth bass in the Illinois River, a large floodplain ecosystem. North American Journal of Fisheries Management 17: 401-412.
Raibley, P.T., T.M. O’Hara, K.S. Irons, K.D. Blodgett, and R.E. Sparks. 1997. Largemouth bass size distributions under varying annual hydrological regimes in the Illinois River. Transactions of the American Fisheries Society 126: 850-856.
Railsback, S. 1999. Reducing uncertainties in instream flow studies. Fisheries 24 (4): 24-26.
Railsback, S. 2001. Instream flow assessment methods: guidance for evaluating instream flow needs in hydropower licensing. Electric Power Research Institute, Palo Alto, California.
Railsback, S.F., R.F. Blackett, and N.D. Pottinger. 1993. Evaluation of the fisheries impact assessment and monitoring program for the Terror Lake hydroelectric project. Rivers 4 (4): 312-327.
Railsback, S.F., M. Gard, B.C. Harvey, J.L. White, and J.K.H. Zimmerman. 2013. Contrast of degraded and restored stream habitat using an individual-based salmon model. North American Journal of Fisheries Management 33 (2): 384-399. Doi: 10.1080/02755947.2013.765527.
Railsback, S.F., and B.C. Harvey. 2001. Individual-based model formulation for cutthroat trout, Little Jones Creek, California. General Technical Report PSW-GTR-182, Pacific Southwest Research Station, Forest Service, US Department of Agriculture.
Railsback, S.F., and B.C. Harvey. 2002. Analysis of habitat selection rules using an individual-based model. Ecology 83: 1817-1830. Doi: 10.1890/0012-9658(2002)083[1817:AOHSRU]2.0.CO;2.
Railsback, S.F., and B.C. Harvey. 2011. Importance of fish behavior in modelling conservation problems: food limitation as an example. Journal of Fish Biology 79: 1648-1662.
Railsback, S.F., B.C. Harvey, J.W. Hayse, and K.E. LaGory. 2005. Tests of theory for diel variation in salmonid feeding activity and use. Ecology 86 (4): 947-959.
Railsback, S.F., B.C. Harvey, S.K. Jackson, and R.H. Lamberson. 2005. inSTREAM: the individual-based stream trout research and environmental assessment model. US Forest Service, General Technical Report PSW-GTR-218, Albany, California. (Humboldt State University and Redwood Sciences Laboratory, Arcata, California.)
Railsback, S.F., B.C. Harvey, S.J. Kupferberg, M.M. Lang, S. McBain, and H.H. Welsh, Jr. 2016. Modeling potential river management conflicts between frogs and salmonids. Canadian Journal of Fisheries and Aquatic Sciences 73 (5): 773-784. Doi: 10.1139/cjfas-2015-0267.
Railsback, S.F., B.C. Harvey, R.H. Lamberson, D.E. Lee, N.J. Claasen, and S. Yoshihara. 2002. Population-level analysis and validation of an individual-based cutthroat trout model. Natural Resource Modeling 15: 83-110.
Railsback, S.F., B.C. Harvey, and J.L. White. 2011. InSALMO version 1.0; model improvements and demonstration application to Chinook salmon spawning, incubation, and rearing in Clear Creek, California. Lang, Railsback and Associates, Arcata, California. www.fws.gov/sacramento/Fisheries/Instream-Flow/fisheries_instream-flow_inSalmo.htm.
Railsback, S.F., B.C. Harvey, and J.L. White. 2014. Facultative anadromy in salmonids: linking habitat, individual life history decisions, and population-level consequences. Candian Journal of Fisheries and Aquatic Sciences 71: 1270-1278.
Railsback, S.F., B.C. Harvey, and J.L. White. 2015. Effects of spatial extent on modeled relations between habitat and anadromous salmonid spawning success. Transactions of the American Fisheries Society 144 (6): 1220-1226. Doi: 10.1080/00028487.2015.1079553.
Railsback, S.F., J.W. Hayse, and K.E. LaGory. 2006. Simulation analysis of within-day flow fluctuation effects on trout below Flaming Gorge Dam. Argonne National Laboratory ANL/EVS/TM/06-01 EPRI 1012855.
Railsback, S.F., and J. Kadvany. 2008. Demonstration Flow Assessment: Judgment and visual observation in instream flow studies. Fisheries 33 (5): 217-227.
Railsback, S.F., R.H. Lamberson, B.C. Harvey, and W.E. Duffy. 1999. Movement rules for spatially-explicit individual-based models of stream fish. Ecological Modelling 123: 73-89.
Railsback, S.F., H.B. Stauffer, and B.C. Harvey. 2003. What can habitat preference models tell us?: tests using a virtual trout population. Ecological Applications 13: 1580-1594. Doi: 10.1890/02-5051.
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Raleigh, R.F. 1982. Habitat suitability index models: brook trout. U.S. Fish and Wildlife Service FWS/OBS-82/10.24. 42 pp.

Raleigh, R.F., T. Hickman, R.C. Solomon, and P.C. Nelson. 1984. Habitat suitability information: rainbow trout. U.S. Fish and Wildlife Service FWS/OBS-82/10.60. 64 pp.


Raleigh, R.F., W.J. Miller, and P.C. Nelson. 1986. Habitat suitability index models and instream flow suitability curves: Chinook salmon. U.S. Fish and Wildlife Service Biological Report 82 (10.122). 64 pp.
Raleigh, R.F., and P.C. Nelson. 1985. Habitat suitability index models and instream flow suitability curves: Pink salmon. U.S. Fish and Wildlife Service Biological Report 82 (10.109). 36 pp.
Raleigh, R.F., L.D. Zuckerman, and P.C. Nelson. 1986. Habitat suitability index models and instream flow suitability curves: brown trout, revised U.S. Fish and Wildlife Service, Biological Report 82 (10: 124). 65 pp.
Ralston, B.E. 2011. Summary report of responses of key resources to the 2000 Low Steady Summer Flow Experiment, along the Colorado River downstream from Glen Canyon Dam, Arizona. USGS Open-File Report 2011-1220. U.S. Geological Survey, Reston, VA.
Rampel, L.L., J.S. Richardson, and M.C. Healy. 2000. Macroinvertebrate community structure along gradients of hydraulic and sedimentary conditions in a large gravel-bed river. Freshwater Biol. 45: 57-73.
Rand, P.S., and S.G. Hinch. 1998. Swim speeds and energy use of upriver-migrating sockeye salmon (Oncorhynchus nerka): simulating metabolic power and assessing risk of energy depletion. Canadian Journal of Fisheries and Aquatic Sciences 55: 1832-1841. Doi: 10.1139/f98-068.
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Randall, R.G., and C.K. Minns. 2000. Use of fish production per unit biomass ratios for measuring the productive capacity of fish habitats. Canadian Journal of Fisheries and Aquatic Sciences 57: 1657-1667.
Raney, E.C., and E.A. Lachner. 1946. Age, growth, and habitats of the hog sucker, Hypentelium nigricans (LeSueur), in New York. American Midland Naturalist 36: 76-85.
Rankin, E.T. 1986. Habitat selection by smallmouth bass in response to physical characteristics in a natural stream. Transactions of the American Fisheries Society 115 (2): 322-334.
Rantz, S.E. 1964. Stream hydrology related to the optimum discharge for king salmon spawning in the northern California Coast Ranges. US. Geological Survey Water-Supply Paper 1779-AA. Washington, D.C., USA.
Rantz, S.E. 1982. Measurement and computation of streamflow, Volume 1. Measurement of stage and discharge. U.S. Geological Survey. Water Supply Paper 2175.
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Rashleigh, B., R. Parmar, J.M. Johnston, and M.C. Barber. 2005. Predictive habitat models for the occurrence of stream fishes in the Mid-Atlantic Highlands. North American Journal of Fisheries Management 25 (4): 1353-1366.
Rasmussen, J.B., and V. Trudeau. 2007. Influence of velocity and chlorophyll standing stock on periphyton d13C and d15N in the Ste. Marguerite River system, Quebec. Canadian Journal of Fisheries and Aquatic Sciences 64 (10): 1370-1381.
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Ray, C., and A. Hastings. 1996. Density-dependence: are we searching at the wrong spatial scale? Journal of Animal Ecology 65: 556-566.
Raymond, H.L. 1968. Migration rates of yearling chinook salmon in relation to flow and impoundments in the Columbia and Snake River. Transactions of the American Fisheries Society 97 (4): 356-359.
Raymond, H.L. 1979. Effects of dams and impoundments on migrations of juvenile chinook salmon and steelhead from the Snake River, 1966 to 1975. Transactions of the American Fisheries Society 108: 505-529.
Raymond, H.L. 1988. Effects of hydroelectric development and fisheries enhancement on spring and summer chinook salmon and steelhead in the Columbia River basin. North American Journal of Fisheries Management 8 (1): 124.
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