Instream Flow Council Instream flow and stream ecology literature OctoberApril 104, 2016 hb



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Payne, J., A. Wood, A. Hamlet, R. Palmer, and D. Lettenmaier. 2004. Mitigating the effects of climate change on the water resources of the Columbia River basin. Clim. Change 62: 233-256.
Payne, T.R., S.D. Eggers, and D.B. Parkinson. 2004. The number of transects required to compute a robust PHABSIM habitat index. Hydroecologie Appliquee 14 (1): 27-53. http://www.hydroecologie.org/articles/hydro/pdf/2004/01/hyro04103.pdf
Payne Wynne, M.L., K.A. Wilson, and K.E. Limburg. 2015. Retrospective examination of habitat use by blueback herring (Alosa aestivalis) using otolith microchemical methods. Canadian Journal of Fisheries and Aquatic Sciences 72 (7): 1073-1086. Doi: 10.1139/cjfas-2014-0206.
Peake, P., J. Fitzsimmons, D. Frood, M. Mel, N. Withers, M. White, and R. Webster. 2011. A new approach to determining environmental flow requirements: Sustaining the natural values of floodplains of the southern Murray-Darling Basin. Ecological Management and Restoration 12: 128-137. Doi: 10.1111/j.1442-8903.2011.00581.x.
Peake, S. 1999. Substrate preferences of juvenile hatchery-reared lake sturgeon, Acipenser fulvescens. Environmental Biology of Fishes 56: 367-374.
Peake, S.J. 2004. An evaluation of the use of critical swimming speed for determination of culvert water velocity criteria for smallmouth bass. Transactions of the American Fisheries Society 133: 1472-1479.
Peake, S.J. 2008. Behavior and passage performance of three warmwater nonsalmonid fish species in an experimental raceway. North American Journal of Fisheries Management 28: 321-327.
Peake, S.J. 2008. Swimming performance and behavior of fish species endemic to Newfoundland and Labrador: a literature review for the purpose of establishing design and water velocity criteria for fishways and culverts. Canadian Manuscript Report of Fisheries and Aquatic Sciences 2843.
Peake, S.J., and A.P. Farrell. 2004. Locomotory behavior and postexercise physiology in relation to swimming speed, gait transition, and metabolism in free-swimming smallmouth bass (Micropterus dolomieui). Journal of Experimental Biology 207: 1563-1575.
Peake, S., R.S. McKinley, and D.A. Scrutton. 1997. Swimming performance of various freshwater Newfoundland salmonids relative to habitat selection and fishway design. J. Fish Biol. 51: 710-723. Doi: 10.1111/j.1095-8649.1997.tb01993.x.
Pearce, F. 2007. When the River Runs Dry: What Happens When Our Water Runs Out? Transworld Publishers, London, UK.
Pearlstine, L., H. McKellar, and W. Kitchens. 1985. Modelling the impacts of a river diversion on bottomland forest communities in the Santee River floodplain, South Carolina. Ecological Modelling 29: 283-302.
Pearsall, S.H., B.J. McCrodden, and P.A. Townsend. 2005. Adaptive management of flows in the lower Roanoke River, North Carolina, USA. Environmental Management 35: 1-15.
Pearson, L.S., K.R. Conover, and R.E. Sams. 1970. Factors affecting the natural rearing of juvenile coho salmon during the summer low-flow season. Oregon Fish Commission, Portland. 64 pp. Unpublished.
Pearson, S.F., and D.A. Manuwal. 2001. Breeding bird response to riparian buffer width in managed Pacific Northwest Douglas-fir forests. Ecological Applications 11: 840-853.
Pearson, W.D., and D.R. Franklin. 1968. Some factors affecting drift rates of Baetis and Simuliidae in a large river. Ecology 49: 75-81.

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Pearsons, T.N., H.W. Li, and G.A. Lamberti. 1992. Influence of habitat complexity on resistance to flooding and resilience of stream fish assemblages. Transactions of the American Fisheries Society 121 (4): 427-436.


Pease, A.A., J.J. Davis, M.S. Edwards, and T.F. Turner. 2006. Habitat and resource use by larval and juvenile fishes in an arid-land river (Rio Grande, New Mexico). Freshwater Biology 51: 475-486.
Pease, A.A., J.M. Taylor, K.O. Winemiller, and R.S. King. 2011. Multiscale environmental influences on fish assemblage structure in central Texas streams. Transactions of the American Fisheries Society 140 (5): 1409-1427. Doi: 10.1080/00028487.2011.623994
Peckarsky, B.L. 1991. Habitat selection by stream-dwelling predatory stoneflies. Canadian Journal of Fisheries and Aquatic Sciences 48: 1069-1076.
Peckarsky, B.L., S.C. Horn, and B. Statzner. 1990. Stonefly predation along a hydraulic gradient: a field test of the harsh-benign hypothesis. Freshwater Biology 24: 181-191.
Peckarsky, B.L., B.W. Taylor, and C.C. Caudill. 2000. Hydrologic and behavioural constraints on oviposition of stream insects: implications for adult dispersal. Oecologia 125: 186-200.
Pedersen, M., and N. Friberg. 2007. Two lowland stream riffles – linkages between physical habitats and benthic invertebrates across multiple spatial scales. Aquatic Ecology 41: 475-490.
Pederson, M.L., E.A. Kristensen, B. Kronvang, and H. Thodsen. 2009. Ecological effects of re-introduction of salmonid spawning gravel in lowland Danish streams. River Research and Applications 25: 626-638.
Pederson, M.L., B. Kronvang, K. Sand-Jensen, and C.C. Hoffmann. 2006. Lowland river systems – processes, form and function. Pages 13-26 in: K. Sand-Jensen, N. Friberg, and J. Murphy, editors. Running waters: Historical Development and Restoration of Lowland Danish Streams. National Environmental Research Institute, Silkeborg.
Pederson, N., A.R. Bell, T.A. Knight, et al. 2012. A long-term perspective on a modern drought in the American Southeast. Environ. Res. Lett. 7: 1-8.
Peer, A.C., D.R. DeVries, and R.A. Wright. 2006. First-year growth and recruitment of coastal largemouth bass (Micropterus salmoides): spatial patterns unresolved by critical periods along a salinity gradient. Canadian Journal of Fisheries and Aquatic Sciences 63: 1911-1924.
Pegg, M.A., K.S. Irons, T.M. O’Hara, and M.A. McClelland. 2006. Initial response of a floodplain lake fish community to water level stabilization. Ecology of Freshwater Fishes 15: 40-47.
Pegg, M.A., C.L. Pierce, and A. Roy. 2003. Hydrological alteration along the Missouri River basin: a time series approach. J. Aquat. Sci. 65: 63-72.
Peirson, G., J.D. Bolland, and I. Cowx. 2008. Lateral dispersal and displacement of fish during flood events in lowland river systems in the UK – implications for sustainable floodplain management. Ecology Ecohydrol. 8 (2-4): 363-373.
Penaluna, B.E., S.F. Railsback, J.B. Dunham, S. Johnson, R.E. Bilby, and A.E. Skaugset. 2015. The role of the geophysical template and environmental regimes in controlling stream-living trout populations. Canadian Journal of Fisheries and Aquatic Sciences 72 (6): 893-901. Doi: 10.1139/cjfas-2014-0377.
Penaz, M., V. Barusm, and M. Prokes. 1999. Changes in the structure of fish assemblages in a river used for energy production. Regul. Rivers 15: 169-180.
Penaz, M., A.-L. Roux, and P. Jurjada. 1992. Drift of larval and juvenile fishes in a by-passed floodplain of the upper River Rhone, France. Folia Zool. 41 (3): 281-288.
Penczak, T., G. Zieba, H. Koszalinski, and A. Kruk. 2003. The importance of oxbow lakes for fish recruitment in a river system. Archives of Hydrobiology 158: 267-281.
Peoples, B.K., R.A. McManamay, D.J. Orth, and E.A. Frimpong. 2014. Nesting habitat use by river chubs in a hydrologically variable Appalachian tailwater. Ecol. Freshw. Fish. 23: 283-293. Doi: 10.1111/eff.12078.
Perkin, J.S. 2009. Historical composition and long-term trends of fish assemblages in two Texas river and microhabitat associations and movement of Guadalupe bass Micropterus treculii in the Pedernales and South Llano rivers. Master’s thesis, Texas State University-San Marcos.
Perkin, J.S., and T.H. Bonner. 2011. Long-term changes in flow regime and fish assemblage composition in the Guadalupe and San Marcos Rivers of Texas. River Research and Applications. Doi: 10.1002/rra.1373
Perkin, J.S., and K.B. Gido. 2011. Stream fragmentation thresholds for a reproductive guild of Great Plains fishes. Fisheries 36: 371-383.
Perkin, J.S., K.B. Gido, A.R. Cooper, T.F. Turner, M.J. Osborne, E.R. Johnson, and K.B. Mayes. 2015. Fragmentation and dewatering transform Great Plains stream fish communities. Ecological Monographs 85: 73-92.
Perkin, J.S., K.B. Gido, K.H. Costigan, M.D. Daniels, and E.R. Johnson. 2014. Fragmentation and drying rachet down Great Plains stream fish diversity. Aquat. Conserv. 25: 639-655.
Perkin, J.S., Z.R. Shattuck, P.T. Bean, T.H. Bonner, E. Saraeva, and T.B. Hardy. 2010. Movement and microhabitat associations of Guadalupe bass in two Texas rivers. North American Journal of Fisheries Management 30 (1): 33-46. Doi:10.1577/M09-070.1
Perkin, J.S., Z.R. Shattuck, J.E. Gerken, and T.H. Bonner. 2013. Fragmentation and drought legacy correlate with distribution of burrhead chub in subtropical streams of North America. Transactions of the American Fisheries Society 142 (5): 1287-1298. Doi: 10.1080/00028487.2013.806352.
Perkins, S.J. 1994. The shrinking Cedar River – channel changes following flow regulation and bank armoring. Proceedings: Effects if Human-Induced Changes on Hydrologic Systems. 1994 Annual Summer Symposium, American Water Resources Association, Middleburg, Virginia. Pp. 649-658.

Perret, A.J, M.D. Kaller, W.E. Kelso, and D.A. Rutherford. 2010. Effects of Hurricanes Katrina and Rita on sports fish community abundance in the eastern Atchafalaya River basin, Louisiana. North American Journal of Fisheries Management 30: 511-517.


Perrin, C.J., L.L. Rempel, and M.L. Rosenau. 2003. White sturgeon spawning habitat in an unregulated river, Fraser River, Canada. Transactions of the American Fisheries Society 132 (1): 154-165.
Perry, D.M., D.A. Scruton, R.S. McKinley, and K.D. Clarke. 1999. Validation of habitat hydraulic modeling: a telemetry study of Atlantic salmon (Salmo salar) and brook trout (Salvelinus fontinalis) movements and habitat use in relation to flow changes in the West Salmon River, Newfoundland, Canada. In: Proceedings of the Third International Symposium on Ecohydraulics. Utah State University, Salt Lake City.
Perry, R.W., P.L. Brandes, J.R. Burau, P.T. Sandstrom, and J.R. Skalski. 2015. Effect of tides, river flow, and gate operations on entrainment of juvenile salmon into the interior Sacramento-San Joaquin River delta. Transactions of the American Fisheries Society 144 (3): 445-455. Doi: 10.1080/00028487.2014.1001038.
Perry, S.A., and W.B. Perry. 1986. Effects of experimental flow regulation on invertebrate drift and stranding in the Flathead and Kootenai Rivers, Montana, USA. Hydrobiologia 134: 171-182. Doi: 10.1007/BF00006739.
Perry, S.A., W.B. Perry, and J.A. Stanford. 1986. Effects of stream regulation on density, growth, and emergence of two mayflies (Ephemeroptera: Ephemerellidae) and a caddisfly (Trichoptera: Hydropsychidae) in two Rocky Mountain rivers (USA). Canadian Journal of Zoology 64: 656-666. Doi: 10.1139/z86-097
Persinger, J.W. 2003. Developing habitat suitability criteria for individual species and habitat guilds in the Shenandoah River basin. M.Sc. thesis, Virginia Polytechnic Institute and State University. Blacksburg, VA. 252 pp. http://scholar.lib.vt.edu/theses/available/etd-04072003-160721
Persinger, J.W., D.J. Orth, and A.W. Averett. 2011. Using habitat guilds to develop habitat suitability criteria for a warmwater stream fish assemblage. River Research and Applications 27 (8): 956-966.
Person, G.N. 1950. Cyclic variations in Columbia River flow studied. Civil Engineering 20 (4): 47-48.
Pert, E.J., and D.C. Erman. 1994. Habitat use by adult rainbow trout under moderate artificial fluctuations in flow. Transactions of the American Fisheries Society 123 (6): 913-923.
Perucca, E., C. Camporeale, and L. Ridolfi. 2006. Influence of river meandering dynamics on riparian vegetation pattern formation. Journal of Geophysical Research 111: G01001.
Pess, G.R., R. Hilborn, K. Kloehn, and T.P. Quinn. 2012. The influence of population dynamics and environmental conditions on pink salmon (Oncorhynchus gorbuscha) recolonization after barrier removal in the Fraser River, British Columbia, Canada. Canadian Journal of Fisheries and Aquatic Sciences 69 (5): 970-982.
Pess, G.R., P.M. Kiffney, M.C. Liermann, T.R. Bennett, J.H. Anderson, and T.P. Quinn. 2011. The influences of body size, habitat quality, and competition on the movement and survival of juvenile coho salmon during the early stages of stream recolonization. Transactions of the American Fisheries Society 140 (4): 883-897. Doi: 10.1080/00028487.2011.587752
Pess, G.R., D.R. Montgomery, E.A. Steel, R.E. Bilby, B.E. Feist, and H.M. Greenberg. 2002. Landscape characteristics, land use, and coho salmon (Oncorhynchus kisutch) abundance, Snohomish River, Wash., U.S.A. Canadian Journal of Fisheries and Aquatic Sciences 59 (4): 613-623.
Peters, D.L., and J.M. Buttle. 2009. The effects of flow regulation and climatic variability on obstructed drainage and reverse flow contribution in an northern river-lake-delta complex, Mackenzie basin headwaters. River Research and Applications 26: 1065-1089. Doi: 10.1002/rra.1314.
Peters, J.C. 1982. Effects of river and streamflow alteration on fishery resources. Fisheries 7 (2): 20-22.
Peters, R.J. 1996. An evaluation of habitat enhancement and wild fry supplementation as a means of increasing coho salmon production of the Clearwater River, Washington. Ph.D. dissertation, University of Washington, Seattle. 206 pp.
Peterson, C.G. 1986. Effects of discharge reduction on diatom colonization below a large hydroelectric dam. Journal of the American Benthological Society 5: 278-289.
Peterson, C.G. 1987. Influences of flow regime on development and desiccation response of lotic diatom communities. Ecology 68 (4): 946-954. Doi: 10.2307/1938366.
Peterson, C.G. 1996. Mechanisms of lotic microalgal colonization following space-clearing disturbances acting at different spatial scales. Oikos 77: 417-435.
Peterson, C.G., and R.J. Stevenson. 1992. Resistance and resilience of lotic algal communities: importance of disturbance timing and current. Ecology 73: 1445-1461.
Peterson, J.T., C.R. Jackson, C.P. Shea, and G. Li. 2009. Development and evaluation of a stream channel classification for estimating fish responses to changing streamflow. Transactions of the American Fisheries Society 138: 1123-1137.

Peterson, J.T., and C.F. Rabeni. 2001. Evaluating the physical characteristics of channel units in an Ozark stream. Transactions of the American Fisheries Society 130 (5): 898-910. Doi: 10.1577/1548-8659(2001)130<0898:ETPCOC>2.0.CO;2.


Peterson, J.T., and C.F. Rabeni. 2001. The relation of fish assemblages to channel units in an Ozark stream. Transactions of the American Fisheries Society 130 (5): 911-926.
Peterson, J.T., J.M. Wisniewski, C.P. Shea, and C.R. Jackson. 2011. Estimation of mussel population response to hydrologic alteration in a southeastern U.S. stream. Environmental Management 48: 109-122. Doi: 10.1007/s00267-011-9688-2
Peterson, M.S., J.-M. Havrylkoff, P.O. Grammer, P.F. Mickle, and W.T. Slack. 2016. Consistent spatiotemporal estuarine habitat use during emigration of a western population of Gulf sturgeon. Transactions of the American Fisheries Society 145 (1): 27-43. Doi: 10.1080/00028487.2015.1091382.
Peterson, M.S., and M.R. Meador. 1994. Effects of salinity on freshwater fishes in coastal plain drainages in the southeastern U.S. Reviews in Fisheries Science 2: 95-121. Doi: 10.1080/10641269409388554.
Peterson, N.P., and T.P. Quinn. 1996. Persistence of egg pocket architecture in redds of chum salmon, Oncorhynchus keta. Environmental Biology of Fishes 46: 243-253.
Peterson, N.P., R.K. Simmons, T. Cardoso, and J/T. Light. 2013. A probabilistic model for assessing passage performance of coastal cutthroat trout through corrugated metal culverts. North American Journal of Fisheries Management 33 (1): 192-199. Doi: 10.1080/002755947.2012.750633.
Peterson, R.C., and C.A. Jennings. 2007. Effects of river discharge on abundance and instantaneous growth of age-0 carpsuckers in the Oconee River, Georgia, USA. River Research and Applications 23: 1016-1025.
Petrosky, C.E., and H.A. Schaller. 2010. Influence of river conditions during seaward migration and ocean conditions on survival rates of Snake River Chinook salmon and steelhead. Ecology of Freshwater Fish 19: 520-536. Doi: 10.1111/j.1600-0633.2010.00425.x
Petry, A.C., A.A. Agostinho, and L.C. Gomes. 2003. Fish assemblages of tropical floodplain lagoons: exploring the role of connectivity in a dry year. Neotropical Ichthyology 76: 606-627.
Petry, P., P.B. Bayley, and D.F. Markle. 2003. Relationships between fish assemblages, macrophytes, and environmental gradients in the Amazon River floodplain. Journal of Fish Biology 63: 547-579. Doi: 10.1046/j.1095-8649.2003.00169.x.
Pettit, N.E., and R.J. Naiman. 2005. Flood-deposited wood debris and its contribution to heterogeneity and regeneration in a semi-arid riparian landscape. Oecologia 145: 434-444.
Pettit, N.E., and R.J. Naiman. 2007. Postfire response of flood-regenerating riparian vegetation in a semi-arid landscape. Ecology 88 (8): 2094-2104.
Pettit, N.E., R.J. Naiman, K.H. Rogers, and J.E. Little. 2005. Post-flooding distribution and characteristics of large woody debris piles along the semi-arid Sabie River, South Africa. River Res. Appl. 21: 27-38.
Petts, G.E. 1979. Complex response of river channel morphology subsequent to reservoir construction. Progress in Physical Geography 3: 329-362.
Petts, G.E. 1980. Long-term consequences of upstream impoundment. Environmental Conservation 7 (4): 325-332.

Petts, G.E. 1984. Impounded Rivers: Perspective for Ecological Management. John Wiley and Sons, Chichester.


Petts, G.E. 1989. Perspectives for ecological management of regulated rivers. Pages 3-24 in: J.A. Gore and G.E. Petts (editors). Alternatives in Regulated River Management. CRC Press, Boca Raton, Florida.
Petts, G.E. 1990. Regulation of large rivers: problems and possibilities for environmentally-sound river development in South America. Inter cencia 15 (6): 388-395.
Petts, G.E. 1996. Water allocation to protect river ecosystems. Regulated Rivers 12: 353-365.
Petts, G.E. 2009. Instream flow science for sustainable river management. Journal of the American Water Resources Association 45 (5): 1071-1086. Doi: 10.1111/j.1752-1688.2009.00360.x
Petts, G., P. Armitage, and E. Castella. 1993. Physical habitat changes and macroinvertebrate response to river regulation: the River Rede, U.K. Regulated Rivers: Research and Management 8: 167-176.
Petts, G.E., M.A. Bickerton, C. Crawford, D.N. Lerner, and D. Evans. 1999. Flow management to sustain groundwater-dominated stream ecosystems. Hydrological Processes 13: 497-513.
Petts, G.E., and P. Calow. 1996. River Flows and Channel Forms. Blackwell Science, Oxford, UK.
Petts, G.E., J.G. Imhof, B.A. Manny, J.F.B. Maher, and S.B. Weisberg. 1989. Management of fish populations in large rivers: a review of tools and approaches. Pp. 578-588 in: D.P. Dodge (ed.) Proceedings of the International Large Rivers Symposium. Can. Special Publ. Fish. Aquatic Sciences 106.
Petts, G.E., and I. Maddock. 1996. Flow allocation for in-river needs. Pp. 60-79 in: G. Petts and P. Calow, eds. River restoration. Blackwell Science. London.
Petts, G.E., I. Maddock, M.A. Bickerton, and A.J.D. Ferguson. 1995. Linking hydrology and ecology: the scientific basis for river management. Pages 1-16 in: D.M. Harper and A.J.D. Ferguson, editors. The Ecological Basis for River Management. Wiley, Chichester.
Petts, G.E., Y. Morales, and J. Sadler. 2006. Linking hydrology and biology to assess the water needs of river ecosystems. Hydrological Processes 20: 2247-2251.
Petty, J.T., and G.D. Grossman. 1996. Patch selection by mottled sculpin (Pisces: Cottidae) in a southern Appalachian stream. Freshwater Biology 35: 261-276.
Petty, J.T., J.L. Hansbarger, B.M. Huntsman, and P.M. Mazik. 2012. Brook trout movement in response to temperature, flow, and thermal refugia within a complex Appalachian riverscape. Transactions of the American Fisheries Society 141 (4): 1060-1073. Doi: 10.1080/00028487.2012.681102
Pezeshki, S.R., R.D. DeLaune, and W.H. Patrick, Jr. 1987. Response of baldcypress (Taxodium distichum L. var. distichum) to increases in flooding salinity in Louisiana’s Mississippi River deltaic plain. Wetlands 7: 1-10.
Phelps, Q.E., S.J. Tripp, J.E. Garvey, D.P. Herzog, D.E. Ostendorf, J.W. Ridings, J.W. Crites, and R.A. Hrabik. 2009. Ecology and habitat use of age-0 paddlefish in the unimpounded middle Mississippi River. Pages 423-440 in: C.P. Paukert and G.D. Scholten, editors. Paddlefish management, propagation, and conservation in the 21st Century: building from 20 years of research and management. American Fisheries Society, Symposium 66, Bethesda, Maryland.
Phelps, Q.E., S.J. Tripp, J.E. Garvey, D.P. Herzog, D.E. Ostendorf, J.W. Ridings, J.W. Crites, and R.A. Hrabik. 2010. Habitat use during early life history infers recovery needs for shovelnose sturgeon and pallid sturgeon in the middle Mississippi River. Transactions of the American Fisheries Society 139 (4): 1060-1068. Doi: 10.1577/T09-199.1
Phelps, Q.E., S.J. Tripp, W.D. Hintz, J.E. Garvey, D.P. Herzog, D.E. Ostendorf, J.W. Ridings, J.W. Crites, and R.A. Hrabik. 2010. Water temperature and river stage influence mortality and abundance of naturally occurring Mississippi River Scaphyrhynchus sturgeon. North American Journal of Fisheries Management 30 (3): 767-775.
Phillip, D.A. 1993. Reproduction and feeding of the mountain mullet in Trinidad, West Indies. Environmental Biology of Fishes 37: 47-55.
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Phipps, R.L. 1979. Simulation of wetlands forest vegetation dynamics. Ecological Modelling 7: 257-288.
Piao, S., P. Friedlingstein, P. Ciais, N. deNoblet-Ducoudre, D. Labat, and S. Zaehle. 2007. Changes in climate and landuse have a large direct impact than rising CO2 on global river runoff trends. Proceedings of the National Academy of Sciences 104: 15242-15247.
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Piccolo, J.J., N.F. Hughes, and M.D. Bryant. 2007. The effects of water depth on prey detection and capture by juvenile coho salmon and steelhead. Ecology of Freshwater Fishes 16 (3): 432-441. Doi: 10.1111/j.1600-0633.2007.00242.x
Piccolo, J.J., N.F. Hughes, and M.D. Bryant. 2008. Water velocity influences prey detection and capture by drift-feeding juvenile coho salmon (Oncorhynchus kisutch) and steelhead (Oncorhynchus mykiss irideus). Canadian Journal of Fisheries and Aquatic Sciences 65 (2): 266-275. Doi: 10.1139/f07-172.
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