Instream Flow Council Instream flow and stream ecology literature OctoberApril 104, 2016 hb



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Schmetterling, D.A. 2001. Seasonal movements of fluvial westslope cutthroat trout in the Blackfoot River drainage, Montana. North American Journal of Fisheries Management 21 (3): 507-520. Doi: 10.1577/1548-8675(2001)021<0507 Doi: 10.1890/1051-0761(2003)013[0206:ESWMMR]2.0.CO;2

:SMOFWC>2.0.CO;2


Schmidt, J.C. 1999. Summary and synthesis of geomorphic studies conducted during the 1996 controlled flood in Grand Canyon. Pages 329-341 in: R.H. Webb, J.C. Schmidt, G.R. Marzolf, and R.A. Valdez, editors, The Controlled Flood in Grand Canyon. American Geophysical Union Geophysical Monograph 110, Washington, D.C., USA.
Schmidt, J.C., E.D. Andrews, D.L. Wegner, D.T. Patten, G.R. Marzolf, et al. 1999. Origins of the 1996 controlled flood in Grand Canyon. Pp. 23-36 in: R.H. Webb, J.C. Schmidt, G.R. Marzolf, and R.A. Valdez, editors, The Controlled Flood in Grand Canyon. AGU Geophys. Monogr. 110.
Schmidt, J.C., R.A. Parnell, P.E. Grams, J.E. Hazel, M.A. Kaplinski, L.E. Stevens, and T.L. Hoffnagle. 2001. The 1996 controlled flood in Grand Canyon: flow, sediment transport, and geomorphic change. Ecological Applications 11 (3): 657-671.
Schmidt, J.C., and D.M. Rubin. 1995. Regulated streamflow, fine-grained deposits, and effective discharge in canyons with abundant debris fans. Pages 177-195 in: J.E. Costa, A.J. Miller, K.W. Potter, and P.R. Wilcock, editors. Natural and anthropogenic influences in fluvial geomorphology. American Geophysical Union Geophysical Monograph 89. Washington, D.C., USA.
Schmidt, J.C., R.H. Webb, R.A. Valdez, G.R. Marzolf, and L.E. Stevens. 1998. Science and values in river restoration in the Grand Canyon. BioScience 48: 735-747.
Schmidt, L.J., and J.P. Potyondy. 2004. Quantifying channel maintenance instream flows: an approach for gravel-bed streams in the western United States. General Technical Report RMRS-GTR-128. U.S. Department of Agriculture Forest Service, Rocky Mountain Research Station, Fort Collins, CO, USA.
Schmutz, S. 2004. Development evaluation and implementation of a standardised fish-based assessment method for the ecological status of European rivers (FAME): A contribution to the Water Framework Directive. Report to European Commission. http://www.fame.boku.ac.at.
Scholz, O., B. Gawne, B. Ebner, and I. Ellis. 2002. The effects of drying and re-flooding on nutrient availability in ephemeral deflation basin lakes in western New South Wales, Australia. River Research and Applications 18 (2): 185-196.
Schrader, W.C. 1989. Trout mortality, movements, and habitat selection during winter in South Willow Creek, Montana. M.S. thesis, Montana State University, Bozeman. 89 pp.
Schramm, H.L., Jr., and M.A. Eggleton. 2006. Applicability of the flood-pulse concept to temperate floodplain river ecosystems: thermal and temporal components. River Research and Application 22: 543-553. Doi: 10.1002/rra.921.
Schrank, A.J., and F.J. Rahel. 2006. Factors influencing summer movement patterns of Bonneville cutthroat trout (Oncorhynchus clarkii utah). Canadian Journal of Fisheries and Aquatic Sciences 63 (3): 660-669.
Schrank, S.J., C.S. Guy, M.R. Whiles, and B.L. Brock. 2001. Influence of instream and landscape-level factors on the distribution of Topeka shiners Notropis topeka in Kansas streams. Copeia 2001: 413-421.
Schroeder, W.W. 1978. Riverine influence on estuaries: A case study, p. 347-364 in: M.L. Wiley (ed.), Estuarine Interactions. Academic Press, Inc., New York.
Schuett-Hames, D.E., N.P. Peterson, R. Conrad, and T.P. Quinn. 2000. Patterns of gravel scour and fill after spawning by chum salmon in a western Washington stream. North American Journal of Fisheries Management 20 (3): 610-617. Doi:10.1577/1548-8675(2000)020<0610:POGSAF>2.3.CO;2.
Schultz, A.A., O.E. Maughan, S.A. Bonar, and W.J. Matter. 2003. Effect of flooding on abundance of native and nonnative fishes downstream from a small impoundment. North American Journal of Fisheries Management 23 (2): 503-511.
Schumm, S.A. 1969. River metamorphosis. Am. Soc. Civil Engineers Proc., Journal Hydraulics Division 95 (HYI): 255-273.
Schumm, S.A. 1971. Fluvial geomorphology: channel adjustments and river metamorphosis. In: H.W. Shen (ed.), River Mechanics, Vol. 1, Fort Collins, CO 5.1-5.22
Schumm, S.A. 1977. The Fluvial System. Wiley-Interscience, New York.
Schuytema, G.S. 1982. A review of aquatic habitat assessment methods. Report EPA-600/3-82-002, Environmental Research Laboratory, US Environmental Protection Agency, Corvallis, Oregon.
Schwartz, J.S., and E.E. Herricks. 2005. Fish use of stage-specific fluvial habitat as refuge patches during a flood in a low-gradient Illinois stream. Canadian Journal of Fisheries and Aquatic Sciences 62: 1540-1552. Doi:10.1139/f05-060.
Schwartz, K.M., and A.R. Orme. 2005. Opening and closure of a seasonal river mouth: the Malibu estuary-barrier-lagoon system, California. Z. Geomorphol. Suppl. 141: 91-109.

Schwarz, H.E., J. Emel, W.J. Dickens, P. Rogers, and J. Thompson. 1990. Water quality and flows. Pages 253-270 in: B.L. Turner, W.C. Clark, R.W. Cates, J.F. Richards, J.T. Mathews, and W.B. Meyer (editors), Earth as Transformed by Human Action. Cambridge University Press, Cambridge, UK.


Schweizer, P.E., and H.I. Jager. 2011. Modeling regional variation in riverine fish biodiversity in the Arkansas-White-Red River basin. Transactions of the American Fisheries Society 140 (5): 1227-1239. Doi: 10.1080/00028487.2011.618354
Schweizer, S., M.E. Borsuk, I. Jowett, and P. Reichert. 2007. Predicting joint frequency distributions of depth and velocity for instream habitat assessment. River Res. Appl. 23: 110-119.
Scott, D., and C.S. Shirvell. 1987. A critique of the Instream Flow Incremental Methodology and observations on flow determination in New Zealand. Pages 2744 in J.F. Craig and J.B. Kemper, editors. Regulated Streams: Advances in Ecology. Plenum Press, New York and London. 431 pp.
Scott, J.M., P.J. Heglund, M.L. Morrison, J.B. Haufler, M.C. Raphail, W.A. Wall, and F.B. Samson (editors). 2002. Predicting species occurrences: issues of accuracy and scale. Island Press, Washington, D.C.
Scott, M.K., and D.D. Magoulick. 2008. Swimming performance of five warmwater stream fish species. Transactions of the American Fisheries Society 137 (1): 209-215.
Scott, M.L., and G.T. Auble. 2002. Conservation and restoration of semi-arid riparian forests: a case study from the upper Missouri River, Montana. Pp. 145-190 in: Flood pulsing in wetlands: restoring the natural hydrological balance. John Wiley & Sons, Inc., New Jersey.
Scott, M.L., G.T. Auble, and J.M. Friedman. 1997. Flood dependency of cottonwood establishment along the Missouri River, Montana, USA. Ecological Applications 7 (2): 677-690.
Scott, M.L., G.T. Auble, J.M. Friedman, L.S. Ischinger, E.D. Eggleston, M.S. Wondzell, P.B. Shafroth, J.T. Back, and M.S. Jordan. 1993. Flow recommendations for maintaining riparian vegetation along the upper Missouri River, Montana. U.S. Geological Survey, Fort Collins, CO.
Scott, M.L., J.M. Friedman, and G.T. Auble. 1996. Fluvial processes and the establishment of bottomland trees. Geomorphology 14: 327-339.
Scott, M.L., G.C. Lines, and G.T. Auble. 2000. Channel incision and patterns of cottonwood stress and mortality along the Mojave River, California. Journal of Arid Environments 44: 399-414.
Scott, M.L., L.J. Martin, G.T. Auble, and C.A. Segelquist. 1991. Predicting the response of woody riparian vegetation to changes in instream flows through integrated monitoring of stream hydrology and riparian vegetation. P. 46 in: South Platte River resource management: Finding a balance. Conference proceedings of the Colorado Water Resources Research Institute, Info. Series 66.
Scott, M.L., P.B. Shafroth, and G.T. Auble. 1999. Responses of riparian cottonwoods to alluvial water table declines. Environmental Management 23 (3): 347-358.
Scott, M.L., P.B. Shafroth, G.T. Auble, and E.D. Eggleston. 1997. Flood dependency of cottonwood establishment along the Missouri River, Montana, USA. Ecological Applications 7: 677-690.
Scott, M.L., M.A. Wondzell, and G.T. Auble. 1993. Hydrograph characteristics relevant to the establishment and growth of western riparian vegetation. Pp. 237-246 in: H.J. Morrel-Soytoux, editor. Proceedings of the Thirteenth Annual American Geophysical Union Hydrology Days. Atherton, CA: Hydrology Days Publications.
Scott, M.T., and L.A. Nielsen. 1989. Young fish distribution in backwaters and main-channel borders of the Kanawha River, West Virginia. J. Fish Biol. 35: 21-27.
Scrimgeour, G.J., R.J. Davidson, and J.M. Davidson. 1988. Recovery of benthic macroinvertebrates and epilithic communities following a large flood, in an unstable, braided, New Zealand river. New Zealand Journal of Marine and Freshwater Research 22: 337-344. Doi: 10.1080/00288330.1988.9516306.
Scrivener, J.C., and M.J. Brownlee. 1989. Effect of forest harvesting on spawning gravel and incubation survival of chum (Oncorhynchus keta) and coho salmon (O. kisutch) in Carnation Creek, British Columbia. Canadian Journal of Fisheries and Aquatic Sciences 46: 681696.
Scrivener, J.C., and J.S. Macdonald. 1998. Interrelationships of streambed gravel, bedload transport, beaver activity and spawning sockeye salmon in Stuart-Takla tributaries, British Columbia, and possible impacts from forest harvesting. Pp. 267-282 in: M.K. Brewin and D.M.A. Monita, editors, Land Management Practices Affecting Aquatic Ecosystems. Can. For. Serv., Calgary, Alberta.
Scruton, D.A., K.D. Clarke, F.A. Bowdring, and C.J. Pennell. 1997. Winter habitat availability for salmonids in Newfoundland streams: a comparison between stream order and habitat type. Pages 425-439 in: S. Ismail, editor. Proceedings of the 9th workshop on river ice. Canadian Geophysical Union, Fredericton, New Brunswick.

Scruton, D.A., and R.J. Gibson. 1993. The development of habitat suitability curves for juvenile Atlantic salmon (Salmo salar) in riverine habitat in insular Newfoundland, Canada. Canadian Special Publication of Fisheries and Aquatic Sciences 118: 149-161.


Scruton, D.A., L.M.N. Ollerhead, K.D. Clarke, C. Pennell, K. Alfredsen, A. Harby, and D. Kelley. 2003. The behavioural response of juvenile Atlantic salmon (Salmo salar) and brook trout (Salvelinus fontinalis) to experimental hydropeaking on a Newfoundland (Canada) river. River Research and Applications 19: 577-587. Doi:10.1002/rra.733.
Scruton, D.A., C.J. Pennell, M.J. Robertson, L.M.N. Ollerhead, K.D. Clarke, K. Alfredsen, A. Harby, and R.S. McKinley. 2005. Seasonal response of juvenile Atlantic salmon to experimental hydropeaking power generation in Newfoundland, Canada. North American Journal of Fisheries Management 5: 277-282.
Scullion, J., C.A. Parish, M. Morgan, and R.W. Edwards. 1982. Comparison of benthic macroinvertebrate fauna and substratum in riffles and pools in the impounded River Elan and the unregulated River Wye, mid-Wales. Freshw. Biol. 12: 579-595.
Seabloom, E.W., A.G. Van Der Valk, and K.A. Moloney. 1998. The role of water depth and soil temperature in determining initial composition of prairie wetland coenoclines. Plant Ecology 138: 203-216.
Seamons, T.R., L. Hauser, K.A. Naish, and T.P. Quinn. 2012, Can interbreeding of wild and artificially propagated animals be prevented by using broodstock selected for a divergent life history? Evolutionary Applications doi: 10.1111/j.1752-4571.2012.00247.x
Sear, D.A. 1993. Fine sediment infiltration into gravel spawning beds within a regulated river experiencing floods: ecological implications for salmonids. Regulated Rivers: Research and Management 8: 373-390.
Sear, D.A. 1995. Morphological and sedimentological changes in a gravel-bed river following 12 years of flow regulation for hydropower. Regulated Rivers: Research and Management 10: 247-264.
Sear, D.A., and P. DeVries, editors. 2008. Salmonid spawning habitat in rivers: physical controls, biological responses, and approaches to remediation. American Fisheries Society, Symposium 65, Bethesda, Maryland.
Sechler, D.R., Q.E. Phelps, S.J. Tripp, J.E. Garvey, D.P. Herzog, D.E. Ostendorf, J.W. Ridings, J.W. Crites. And R.A. Hrabik. 2012. Habitat for age-0 shovelnose sturgeon and pallid sturgeon in a large river: interaction among abiotic factors, food, and energy intake. North American Journal of Fisheries and Aquatic Science 32 (1): 24-31. Doi: 10.1080/02755947.2012.655848
Sechnick, C.W., R.F. Carline, R.A. Stein, and E.T. Rankin. 1986. Habitat selection by smallmouth bass in response to physical characteristics of a simulated stream. Transactions of the American Fisheries Society 115 (2): 314-321.
Secretan, Y., M. Leclerc, S. Duchesne, and M. Heniche. 2001. Une methodologie de modelisation numerique de terrain pour la simulation hydrodynamique bidimensionnelle. Revue de Sciences de l’eau 14 (2): 187-212.
Seegrist, D.W., and R. Gard. 1972. Effects of floods on trout in Sagehen Creek, California. Transactions of the American Fisheries Society 101: 478-482. Doi:10.1577/1548-8659(1972)101<478:EOFOTI>2.0.CO;2.
Seelbach, P.W. 1993. Population biology of steelhead in a stable-flow, low-gradient tributary of Lake Michigan. Transactions of the American Fisheries Society 122: 179-198.
Seelbach, P.W., L.C. Hinz, M.J. Wiley, and A.R. Cooper. 2010. Use of multiple linear regression to estimate flow regimes for all rivers across Illinois, Michigan, and Wisconsin. Michigan Department of Natural Resources and Environment, Fisheries Research Report 2095, Ann Arbor.
Seesholtz, A.M., M.J. Manuel, and J.P. Van EEnennaam. 2015. First documented spawning and associated habitat conditions for green sturgeon in the Feather River, California. Environmental Biology of Fishes 98: 905-912.
Segelquist, C.A., M.L. Scott, and G.T. Auble. 1993. Establishment of Populus deltoides under simulated alluvial groundwater declines. American Midland Naturalist 130: 274-285.
Seiler, D., S. Neuhauser, and L. Kishimoto. 2003. 2002 Skagit River wild 0+ Chinook production evaluation annual report. Washington Department of Fish and Wildlife, Rep. FPA 03-11.
Seiler, S.M., and E.R. Keeley. 2007. Morphological and swimming stamina differences between Yellowstone cutthroat trout (Oncorhynchus clarki bouvieri), rainbow trout (O. mykiss) and their hybrids. Canadian Journal of Fisheries and Aquatic Sciences 64: 127-135.
Selch, T.M., C.W. Hoagstrom, E.J. Weimer, J.P. Duehr, and S.R. Chipps. 2007. Influence of fluctuating water levels on mercury concentrations in adult walleye. Bulletin of Environmental Contamination and Toxicology 79: 36-40.
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Semenchenko, N.N. 1988. Mechanisms of innate population control in sockeye salmon, Oncorhynchus nerka. Journal of Ichthyology 28: 149-157.
Sempeski, P., and P. Gaudin. 1995. Habitat selection by grayling. II. Preliminary results on larval and juvenile daytime habitats. Journal of Fish Biology 47: 345-349.
Sempeski, P., and P. Gaudin. 1995. Construction of habitat preference curves for spawning sites and young stages of grayling (Thymallus thymallus, L.). Bull. Fr. Peche Piscic. 337/338/339: 277-282.
Sempeski, P., and P. Gaudin. 1995. Habitat selection by grayling - I. Spawning habitats. J. Fish Biol. 47:256-265.
Serafy, J.E., K.C. Lindeman, T.E. Hopkins, and J.S. Ault. 1997. Effects of freshwater canal discharge on fish assemblages in a subtropical bay: Field and laboratory observations. Marine Ecology Progress Series 160: 161-172.
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Sexauer, H.M., and P.W. James. 1997. A comparison of the microhabitat use by juvenile bull trout in four streams located in the eastern Cascades, Washington. Pp. 361-370 in: W.C. Mackay, M.K. Brewin, and M. Monita, eds. Trout Unlimited Canada. Bull Trout Task Force, Calgary, Alberta.
Shaff, C.D. 2006. Incorporation of salmon derived nutrients into Oregon coastal streams and the role of physical habitat. Master’s thesis. Oregon State University, Corvallis.
Shafroth, P.B. 2003. Natural flooding and dams: effects on riparian systems. Southwest Hydrology 2 (March/April): 20-21, 27.
Shafroth, P.B., G.T. Auble, and M.L. Scott. 1995. Germination and establishment of the native plains cottonwood (Populus deltoides Marshall subsp. monilifera) and the exotic Russian-olive (Elaeagnus angustifolia L.). Conservation Biology 9 (5): 1169-1175.
Shafroth, P.B., G.T. Auble, J.C. Stromberg, and D.T. Patten. 1998. Establishment of woody riparian vegetation in relation to annual patterns of streamflow, Bill Williams River, Arizona. Wetlands 18: 577-590.
Shafroth, P.B., J.M. Friedman, G.T. Auble, and M.L. Scott. 2004. Vegetation responses to dam removal. Arid Ecosystems 10 (21): 95-105.
Shafroth, P.B., J.M. Friedman, G.T. Auble, M.L. Scott, and J.H. Braatne. 2002. Potential responses of riparian vegetation to dam removal. BioScience 52: 703-712.
Shafroth, P.B., J.C. Stromberg, and D.T. Patten. 2000. Woody riparian vegetation response to different alluvial water table regimes. Western North American Naturalist 60: 66-76.
Shafroth, P.B., A.C. Wilcox, D.A. Lytle, J.T. Hickey, D.C. Andersen, V.B. Beauchamp, A. Hautzinger, L.E. McMullen, and A. Warner. 2010. Ecosystem effects of environmental flows: modeling and experimental floods in a dryland river. Freshwater Biology 55: 68-85. doi:10.1111/j.1365-2427.2009.02271.x.
Shaikh, M., D. Green, and H. Cross. 2001. A remote sensing approach to determine the environmental flows for wetlands of the Lower Darling River, New South Wales, Australia. International Journal of Remote Sensing 23: 1737-1751.
Shankman, D. 1993. Channel migration and vegetation patterns in the southeastern coastal plain. Conservation Biology 7: 176-183.
Shannon, J.P., D.S. Blinn, T. McKinney, E.P. Benenati, K.P. Wilson, and C. O’Brien. 2001. Aquatic food base response to the 1996 test flood below Glen Canyon Dam, Colorado River, Arizona. Ecological Applications 11: 672-685.
Shapovalov, L., and A.C. Taft. 1954. The life histories of the steelhead rainbow trout (Salmo gairdneri gairdneri) and silver salmon (Oncorhynchus kisutch) with special reference to Waddell Creek, California, and recommendations regarding their management. California Department of Fish and Game, Fisheries Bulletin 98, 375 pp.
Sharma, R., and R. Hilborn. 2001. Empirical relationships between watershed characteristics and coho salmon (Oncorhynchus kisutch) smolt abundance in 14 western Washington streams. Canadian Journal of Fisheries and Aquatic Sciences 58 (7): 14531463. Doi:10.1139/cjfas-58-7-1453.
Sharpe, C.P. 2011. Spawning and recruitment ecology of golden perch (Macquaria ambigua Richardson 1845) in the Murray and Darling Rivers. Ph.D. dissertation, Griffith University, Brisbane.
Shaw, A., and J.S. Richardson. 2001. Direct and indirect effects of sediment pulse duration on stream invertebrate assemblages and rainbow trout (Oncorhynchus mykiss) growth and survival. Canadian Journal of Fisheries and Aquatic Sciences 58 (11): 2213-2221. Doi:10.1139/cjfas-58-11-2213.
Shaw, J., and D.J. Cooper. 2008. Watershed and stream reach characteristics controlling riparian vegetation in semiarid ephemeral stream networks. Journal of Hydrology 350: 68-82.
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Sheaffer, W.A., and J.G. Nickum. 1986. Backwater areas as nursery habitats for fishes in Pool 13 of the Upper Mississippi River. Hydrobiologia 136: 131-140.
Sheaffer, W.A., and J.G. Nickum. 1986. Relative abundance of macroinvertebrates found in habitats associated with backwater area confluences in Pool 13 of the Upper Mississippi River. Hydrobiologia 136: 131-140.
Sheffield, J., and E.F. Wood. 2008. Projected changes in drought occurrence under future global warming from multi-model, multi-scenario, IPCC AR4 simulations. Clim. Dynam. 31: 79-105.
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Sheldon, F., A.J. Boulton, and J.T. Puckridge. 2002. Conservation value of variable connectivity: aquatic invertebrate assemblages of channel and floodplain assemblages of channel and floodplain habitats of a central Australian arid-zone river, Cooper Creek. Biological Conservation 103: 13-31.
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Shellberg, J.G. 2002. Hydrologic, geomorphic, and biologic influences on redd scour in bull char (Salvelinus confluentus) spawning streams. M.Sc. thesis, University of Washington. Seattle, WA. 206 pp. (http://depts.washington.edu/cwws/Theses/shellberg.html).


Shellberg, J.G., S.M. Bolton, and D.R. Montgomery. 2010. Hydrogeomorphic effects on bedload scour in bull char (Salvelinus confluentus) spawning habitat, western Washington, USA. Canadian Journal of Fisheries and Aquatic Sciences 67 (4): 626-640. Doi:10.1139/F10-007
Shen, Y., and P. Diplas. 2008. Application of two- and three-dimensional computational fluid dynamics models to complex ecological stream flows. Journal of Hydrology 348: 195-214.
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Shentsis, I., and E. Rosenthal. 2003. Recharge of aquifers by flood events in an arid region. Hydrol. Process. 17: 695-712.
Shepard, M.F. 1972. Timing of adult steelhead migrations as influenced by flow and temperature in four representative Washington streams. M.Sc. thesis, University of Washington. Seattle, WA. 197 pp.

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