Webmaster's Note: As Gerard says below, his Fourth Report came in two parts
Yüklə 3,49 Mb.
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Frame = -3
+HEPPVQPDRCALSGNYRLESNPVRHDLSPLAAATGNRISRARYVGGATEFLKWWPNYGY Sbjct: 1 MHEPPVQPDRCALSGNYRLESNPVRHDLSPLAAATGNRISRARYVGGATEFLKWWPNYGY 60
TRRTVFGICALLKPVTFGKRVGSS Sbjct: 61 TRRTVFGICALLKPVTFGKRVGSS 84 -------------------- gnl|ti|818412214 name:POAA-aab33c07.b1 mate_pair:818411870 (881 letters)
Score E
Sequences producing significant alignments: (bits) Value gb|AAB49621.1| vacuolar proton ATPase 100-kDa subunit [Dict... 77 8e-013 ref|XP_629892.1| vacuolar ATPase transmembrane subunit [Dic... 77 8e-013 emb|CAJ08612.1| vacuolar proton-ATPase-like protein, putati... 66 1e-009 ref|XP_814777.1| vacuolar proton translocating ATPase subun... 66 2e-009 gb|EAN95417.1| vacuolar proton translocating ATPase subunit... 66 2e-009 ref|XP_652779.1| vacuolar proton ATPase subunit, putative [... 65 3e-009 gb|AAX70459.1| vacuolar proton translocating ATPase subunit... 64 5e-009 ref|XP_653563.1| vacuolar proton ATPase subunit, putative [... 63 1e-008 emb|CAJ05081.1| vacuolar proton translocating ATPase subuni... 61 4e-008 ref|NP_179736.1| ATPase [Arabidopsis thaliana] >gi|20466448... 59 3e-007 >gb|AAB49621.1| vacuolar proton ATPase 100-kDa subunit [Dictyostelium discoideum] Length = 815
Identities = 38/87 (43%), Positives = 52/87 (59%) Frame = +1
MS+GI SLLNY+ +K P+ +N L QF+PQ++FLW IFGYM VLI++KW + Sbjct: 544 MSVGICFSLLNYLNQKGPIKIVNILTQFVPQMIFLWSIFGYMSVLIILKWVVPY------ 597
SF + PPF LP + F+ Sbjct: 598 -----RSFEVDKVDPPFILPTIIAMFL 619 ------------ gnl|ti|818411870 name:POAA-aab33c07.g1 mate_pair:818412214 (927 letters)
Score E
Sequences producing significant alignments: (bits) Value ref|XP_653563.1| vacuolar proton ATPase subunit, putative [... 52 2e-005 gb|EAN97434.1| vacuolar proton-ATPase-like protein, putativ... 52 2e-005 gb|AAM94005.1| vacuolar proton ATPase 100 kDa subunit [Grif... 52 3e-005 ref|XP_791302.1| PREDICTED: similar to Vacuolar proton tran... 52 4e-005 emb|CAB16306.2| Hypothetical protein C26H9A.1 [Caenorhabdit... 51 7e-005 ref|XP_814777.1| vacuolar proton translocating ATPase subun... 51 7e-005 gb|EAN95417.1| vacuolar proton translocating ATPase subunit... 51 7e-005 ref|XP_708125.1| PREDICTED: similar to ATPase, H+ transport... 50 9e-005 ref|XP_708124.1| PREDICTED: similar to ATPase, H+ transport... 50 9e-005 ref|XP_708123.1| PREDICTED: similar to ATPase, H+ transport... 50 9e-005 >ref|XP_653563.1| vacuolar proton ATPase subunit, putative [Entamoeba histolytica HM-1:IMSS] ref|XP_648633.1| vacuolar proton ATPase subunit, putative [Entamoeba histolytica HM-1:IMSS] gb|EAL48176.1| vacuolar proton ATPase subunit, putative [Entamoeba histolytica HM-1:IMSS] gb|EAL43247.1| vacuolar proton ATPase subunit, putative [Entamoeba histolytica HM-1:IMSS] Length = 803 Score = 52.4 bits (124), Expect = 2e-005 Identities = 34/92 (36%), Positives = 48/92 (52%) Frame = -2
N ++ + L+L HA++ S F+ V YL+ MN I + Sbjct: 704 NTASYLRLWALSLAHAQLG--------SVFLE-NVFYLLMEMNIFITIFV---------- 744
++VWA TLA+L+ ME+LSAFLH LRLHW E Sbjct: 745 GFAVWALITLAILIGMESLSAFLHTLRLHWIE 776 ------------------- gnl|ti|818412215 name:POAA-aab33c08.b1 mate_pair:818411871 (902 letters)
Score E
Sequences producing significant alignments: (bits) Value gb|EAL20548.1| hypothetical protein CNBE4680 [Cryptococcus ... 84 7e-015 gb|AAW43854.1| conserved hypothetical protein [Cryptococcus... 84 7e-015 ref|NP_082810.1| stromal membrane-associated protein 1 isof... 82 3e-014 dbj|BAB02056.1| unnamed protein product [Arabidopsis thaliana] 80 1e-013 ref|NP_188393.1| DNA binding [Arabidopsis thaliana] 80 1e-013 gb|AAG17004.1| ARF GAP-like zinc finger-containing protein ... 79 3e-013 gb|AAM67219.1| ARF GAP-like zinc finger-containing protein ... 79 3e-013 dbj|BAD31272.1| ARF GAP-like zinc finger-containing protein... 79 3e-013 ref|NP_568807.1| DNA binding [Arabidopsis thaliana] >gi|231... 79 3e-013 ref|XP_643438.1| hypothetical protein DDB0167328 [Dictyoste... 78 5e-013 >gb|EAL20548.1| hypothetical protein CNBE4680 [Cryptococcus neoformans var. neoformans B-3501A] Length = 438 Score = 84.0 bits (206), Expect = 7e-015 Identities = 36/43 (83%), Positives = 40/43 (93%) Frame = -2
RWAS NLG+F+CIRCSGIHRSMGTHISKVKS+ LD WTPEQ+E Sbjct: 38 RWASWNLGVFLCIRCSGIHRSMGTHISKVKSIDLDIWTPEQME 80 -------------- gnl|ti|818412233 name:POAA-aab33e04.b1 mate_pair:818411890 (928 letters)
Score E
Sequences producing significant alignments: (bits) Value dbj|BAC90287.1| gll2346 [Gloeobacter violaceus PCC 7421] >g... 68 5e-010 gb|AAV95560.1| conserved hypothetical protein [Silicibacter... 56 2e-006 ref|ZP_00767807.1| conserved hypothetical protein [Chlorofl... 56 2e-006 ref|ZP_00620693.1| hypothetical protein RoseDRAFT_3107 [Sil... 51 7e-005 ref|NP_104213.1| hypothetical protein mlr3010 [Mesorhizobiu... 50 9e-005 ref|ZP_00555281.1| conserved hypothetical protein [Jannasch... 50 9e-005 gb|EAL90718.1| conserved hypothetical protein [Aspergillus ... 46 0.002 emb|CAF32095.1| hypothetical protein, conserved [Aspergillu... 46 0.002 ref|ZP_00376799.1| hypothetical protein ELI2040 [Erythrobac... 44 0.011 gb|EAA73942.1| hypothetical protein FG05679.1 [Gibberella z... 42 0.023 >dbj|BAC90287.1| gll2346 [Gloeobacter violaceus PCC 7421] ref|NP_925292.1| hypothetical protein gll2346 [Gloeobacter violaceus PCC 7421] Length = 295 Score = 67.8 bits (164), Expect = 5e-010 Identities = 31/74 (41%), Positives = 46/74 (62%) Frame = +3
+L+A CVCFPS+W + EK L +H PVP + + LA PV +L+ ++P+WR NW+ Sbjct: 132 ILSAACVCFPSRWLLTEKVGLLLTGIHAPVPGYAEQLAGPVDRFFERLRVETPMWRINWT 191
I+D P+ LP Sbjct: 192 IVD---SPELFLLP 202 Score = 44.3 bits (103), Expect = 0.006 Identities = 20/38 (52%), Positives = 26/38 (68%) Frame = +2 Query: 527 SADQVGDRVMYRVERQTLTRLPKSNAILFTIRTYQRPL 640 +A +R+ R+ERQTL RL +S +LFTIRTY PL Sbjct: 212 TAQDAAERLWIRIERQTLRRLAESRTVLFTIRTYVHPL 249 ----------- gnl|ti|818412240 name:POAA-aab33e11.b1 mate_pair:818411897 (901 letters)
Score E
Sequences producing significant alignments: (bits) Value ref|XP_794415.1| PREDICTED: similar to CG10222-PA [Strongyl... 72 3e-011 gb|AAH83538.1| Hypothetical protein LOC407722 [Danio rerio] 70 8e-011 ref|NP_999966.1| ATP binding domain 1 family, member B [Dan... 70 8e-011 ref|XP_466196.1| putative purine nucleotide binding protein... 70 1e-010 ref|XP_417724.1| PREDICTED: similar to hypothetical protein... 70 1e-010 gb|AAH41519.1| LOC398460 protein [Xenopus laevis] 69 2e-010 gb|AAH91618.1| MGC97781 protein [Xenopus tropicalis] >gi|71... 69 2e-010 gb|AAH80422.1| LOC398460 protein [Xenopus laevis] 69 2e-010 emb|CAG00035.1| unnamed protein product [Tetraodon nigrovir... 69 2e-010 gb|ABA40377.1| SJCHGC09445 protein [Schistosoma japonicum] 68 4e-010 >ref|XP_794415.1| PREDICTED: similar to CG10222-PA [Strongylocentrotus purpuratus] Length = 308
Identities = 32/56 (57%), Positives = 43/56 (76%) Frame = -3
K+ VHLVD++YCS ++ VLL +LSTMLQ+E+PHVN+LSKIDL+ QY L + Sbjct: 130 KLVSVHLVDAHYCSDPAKFIGVLLTSLSTMLQMELPHVNLLSKIDLVEQYGRLAFN 185 ----------------- gnl|ti|818411925 name:POAA-aab33h04.g1 mate_pair:818412267 (895 letters)
Score E
Sequences producing significant alignments: (bits) Value sp|P03851|YPB3_ECOLI Hypothetical 9.4 kDa protein 120 6e-026 gb|AAB59124.1| 10.2 kd ORF [Plasmid ColE1] >gi|9507257|ref|... 119 2e-025 ref|ZP_00374729.1| conserved hypothetical protein [Wolbachi... 77 1e-012 pir||JQ1541 hypothetical 16.9K protein - Salmonella typhimu... 52 4e-005 dbj|BAC04601.1| unnamed protein product [Homo sapiens] 49 2e-004 ref|XP_499069.1| PREDICTED: hypothetical protein XP_499069 ... 47 0.001 gb|AAS38609.1| hypothetical protein [Dictyostelium discoideum] 45 0.003 pir||A53577 ascites sialoglycoprotein 1 - rat (fragments) 45 0.003 ref|XP_645129.1| hypothetical protein DDB0217043 [Dictyoste... 45 0.003 gb|AAA85523.1| Heterodimeric complex composed of a mucin su... 45 0.003 >sp|P03851|YPB3_ECOLI Hypothetical 9.4 kDa protein Length = 84
Identities = 56/60 (93%), Positives = 58/60 (96%) Frame = -3
RHDLSPLAAA+GNRISRARYVGGATEFLKWWPNYGYTRRTV GIC LLKPV+FGKRVGSS Sbjct: 25 RHDLSPLAAATGNRISRARYVGGATEFLKWWPNYGYTRRTVFGICALLKPVTFGKRVGSS 84
Identities = 24/41 (58%), Positives = 26/41 (63%) Frame = -1
+PPVQPDRCALSGNYRLESNP RH P+ R Sbjct: 3 EPPVQPDRCALSGNYRLESNP-----VRHDLSPLAAATGNR 38 -------
gnl|ti|818412269 name:POAA-aab33h06.b1 mate_pair:818411927 (897 letters)
Score E
Sequences producing significant alignments: (bits) Value emb|CAD37030.1| probable xanthine dehydrogenase [Neurospora... 49 2e-004 gb|AAT81740.1| xanthine dehydrogenase, putative [Oryza sati... 45 0.003 ref|XP_688983.1| PREDICTED: similar to xanthine dehydrogena... 45 0.003 ref|NP_990458.1| xanthine dehydrogenase [Gallus gallus] >gi... 45 0.004 gb|EAA68516.1| hypothetical protein FG01561.1 [Gibberella z... 45 0.004 ref|NP_035853.2| xanthine dehydrogenase [Mus musculus] 44 0.006 dbj|BAE26022.1| unnamed protein product [Mus musculus] 44 0.006 dbj|BAE37907.1| unnamed protein product [Mus musculus] 44 0.006 ref|XP_579397.1| PREDICTED: hypothetical protein XP_579397 ... 44 0.006 pdb|1WYG|A Chain A, Crystal Structure Of A Rat Xanthine Deh... 44 0.006 >emb|CAD37030.1| probable xanthine dehydrogenase [Neurospora crassa] Length = 1364
Identities = 21/27 (77%), Positives = 22/27 (81%) Frame = -1
GTKL CGEGGCGACTV S F+PT NK Sbjct: 63 GTKLGCGEGGCGACTVVVSQFNPTTNK 89 -------------- gnl|ti|820216905 name:POAA-aab46a05.b1 mate_pair:818409664 (420 letters)
Score E
Sequences producing significant alignments: (bits) Value gb|AAO52506.1| similar to vacuolar Protein Sorting; Vps13p ... 62 6e-009 ref|XP_644147.1| hypothetical protein DDB0217546 [Dictyoste... 62 6e-009 ref|XP_637643.1| hypothetical protein DDB0187116 [Dictyoste... 40 0.020 ref|XP_663183.1| hypothetical protein AN5579.2 [Aspergillus... 39 0.075 gb|EAL89636.1| vacuolar protein sorting-associated protein ... 37 0.28 dbj|BAA25068.1| XA1 [Oryza sativa] 35 0.83 ref|XP_473935.1| OSJNBb0085C12.12 [Oryza sativa (japonica c... 34 1.4 emb|CAB73522.1| hypothetical protein Cj1268c [Campylobacter... 34 1.4 ref|YP_179390.1| oxidoreductase, FAD-dependent [Campylobact... 33 2.4 ref|NP_602106.1| putative integral membrane transport prote... 33 3.1 >gb|AAO52506.1| similar to vacuolar Protein Sorting; Vps13p [Saccharomyces cerevisiae] [Dictyostelium discoideum] Length = 2101 Score = 62.0 bits (149), Expect = 6e-009 Identities = 31/107 (28%), Positives = 50/107 (46%) Frame = +3
YLK+RPK+RP DP+AWWKY Sbjct: 325 YLKYRPKQRPKQDPKAWWKY---------------------------------------- 344
+G+VV E+IR+++ ++SW ++ ++ + R EYI+L+K V W+ Sbjct: 345 ---VGDVVRESIREKIQQRSWTFIQKRRQNRKEYIKLFKKLQNVDWM 388 -------------- gnl|ti|820216907 name:POAA-aab46a07.b1 mate_pair:818409666 (907 letters)
Score E
Sequences producing significant alignments: (bits) Value gb|AAO50779.1| similar to Mus musculus (Mouse). Sex-determi... 62 4e-008 ref|XP_642929.1| hypothetical protein DDB0217895 [Dictyoste... 62 4e-008 ref|XP_549834.1| putative tDET1 protein [Oryza sativa (japo... 53 1e-005 ref|NP_908360.1| putative tDET1 protein [Oryza sativa (japo... 53 1e-005 ref|XP_795871.1| PREDICTED: similar to de-etiolated homolog... 53 2e-005 emb|CAF91414.1| unnamed protein product [Tetraodon nigrovir... 53 2e-005 gb|AAH73728.1| MGC84545 protein [Xenopus laevis] 52 2e-005 gb|AAH76520.1| De-etiolated homolog 1 [Danio rerio] 52 2e-005 ref|XP_702074.1| PREDICTED: hypothetical protein XP_696982 ... 52 2e-005 gb|AAH55677.1| De-etiolated homolog 1 [Danio rerio] >gi|410... 52 3e-005 >gb|AAO50779.1| similar to Mus musculus (Mouse). Sex-determining region Y protein (Testis-determining factor) [Dictyostelium discoideum] Length = 1461 Score = 61.6 bits (148), Expect = 4e-008 Identities = 28/43 (65%), Positives = 34/43 (79%) Frame = +1
V DK F+RD I LAHH+GVYLY D+F VLS+Q Q IH+FQI+ Sbjct: 662 VRDKITFKRDVIHLAHHSGVYLYKDLFIVLSLQYQAIHIFQIK 704 ---------------- Yüklə 3,49 Mb. Dostları ilə paylaş:
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