Webmaster's Note: As Gerard says below, his Fourth Report came in two parts
Yüklə 3,49 Mb.
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Identities = 33/51 (64%), Positives = 40/51 (78%) Frame = +3
+Y +EY GNSGKLVITPLTD+ Y+TLTQAL L +G AP+GPAG K + K Sbjct: 2320 KYLYEYIGNSGKLVITPLTDKCYITLTQALNLILGGAPAGPAGTGKTETTK 2370 Score = 39.7 bits (91), Expect = 0.14 Identities = 24/63 (38%), Positives = 32/63 (50%) Frame = +2 Query: 668 PKGTGKTETSKDLGKISRALLFYVFQLFEQNGFTKPWPEIFRVWPMRGRMACLDEFNRIA 847 P GTGKTET+KDL K + + ++F Q + +I G C DEFNRI+ Sbjct: 2360 PAGTGKTETTKDLSK-AIGIAIFIFNCSNQMNYFN-MSQICIGLSQTGAWGCFDEFNRIS 2417
V Sbjct: 2418 IEV 2420 ------------------------ gnl|ti|818416481 name:POAA-aab01g05.b1 mate_pair:818415968 (895 letters) Score E
Sequences producing significant alignments: (bits) Value emb|CAB91165.1| SPBC1683.03c [Schizosaccharomyces pombe] >g... 163 7e-039 emb|CAA99709.1| unnamed protein product [Saccharomyces cere... 161 2e-038 ref|XP_451545.1| unnamed protein product [Kluyveromyces lac... 144 3e-033 ref|XP_758129.1| hypothetical protein UM01982.1 [Ustilago m... 142 1e-032 gb|AAL68895.1| aminotriazole resistance protein [Exophiala ... 139 2e-031 gb|EAA71464.1| hypothetical protein FG03772.1 [Gibberella z... 133 7e-030 emb|CAG87131.1| unnamed protein product [Debaryomyces hanse... 133 9e-030 gb|EAL91608.1| MFS transporter of unkown specificity [Asper... 131 4e-029 ref|XP_682639.1| hypothetical protein AN9370.2 [Aspergillus... 130 5e-029 emb|CAG85888.1| unnamed protein product [Debaryomyces hanse... 128 3e-028 >emb|CAB91165.1| SPBC1683.03c [Schizosaccharomyces pombe] ref|NP_595059.1| hypothetical protein SPBC1683.03c [Schizosaccharomyces pombe 972h-] Length = 519
Identities = 77/144 (53%), Positives = 101/144 (70%), Gaps = 1/144 (0%) Frame = +2
++ IP ++ +E+ ++ KFDY GA GV GLVL NF+WNQGPV GW PY YILLI+ Sbjct: 223 YFAIPHIEADEVEEKQ----KFDYLGAFFGVSGLVLINFSWNQGPVVGWQVPYVYILLII 278
G + V+F+ VE +V QP+L P + N E+G VL+C+A GWA FGIW++Y+WQ L LR Sbjct: 279 GFLSLVVFVLVEKRVVQPILAPSMMNSEMGCVLICVAAGWACFGIWMYYLWQFLENLRFA 338
+PL AQ PVG SG AAA+TTG Sbjct: 339 TPLLVTAQLTPVGISGCAAALTTG 362 Score = 37.0 bits (84), Expect = 0.92 Identities = 17/30 (56%), Positives = 23/30 (76%) Frame = +3 Query: 582 SGKLLSRLPTSVIMTISMVAFTAGSILLAT 671 +G LL RL + IM +SM+AFT G+IL+AT Sbjct: 361 TGYLLKRLKPTKIMVVSMIAFTVGTILIAT 390 ----------------- gnl|ti|820217883 name:POAA-aab22d04.g1 mate_pair:818413000 (896 letters)
Score E
Sequences producing significant alignments: (bits) Value emb|CAI24609.1| elaC homolog 2 (E. coli) [Mus musculus] 56 1e-006 emb|CAI24610.1| elaC homolog 2 (E. coli) [Mus musculus] >gi... 56 1e-006 ref|NP_075968.1| elaC homolog 2 [Mus musculus] >gi|11992379... 56 1e-006 emb|CAI24608.1| elaC homolog 2 (E. coli) [Mus musculus] 56 1e-006 dbj|BAB22981.2| unnamed protein product [Mus musculus] 56 1e-006 dbj|BAB23185.1| unnamed protein product [Mus musculus] 56 1e-006 gb|AAK29421.1| putative prostate cancer susceptibility prot... 56 1e-006 gb|AAK29420.1| putative prostate cancer susceptibility prot... 56 1e-006 ref|XP_872127.1| PREDICTED: similar to elaC homolog 2 isofo... 56 2e-006 ref|XP_586182.2| PREDICTED: similar to elaC homolog 2 isofo... 56 2e-006 >emb|CAI24609.1| elaC homolog 2 (E. coli) [Mus musculus] Length = 824
Identities = 28/47 (59%), Positives = 33/47 (70%) Frame = -3
SGDT PC + GKDA LLIHEATLE GLE +A + HST QA++ Sbjct: 660 SGDTMPCEALVQMGKDATLLIHEATLEDGLEEEAVEKTHSTTSQAIN 706 ------------------- gnl|ti|820218323 name:POAA-aab23c02.g1 (928 letters) Score E
Sequences producing significant alignments: (bits) Value emb|CAC80550.1| cyclophilin [Ricinus communis] 54 6e-006 ref|XP_362521.1| hypothetical protein MG08104.4 [Magnaporth... 54 6e-006 gb|AAN31483.1| peptidylprolyl isomerase [Phytophthora infes... 54 1e-005 dbj|BAA25755.1| vcCyP [Vicia faba] 54 1e-005 dbj|BAB82452.1| CYP1 [Vigna radiata] 53 2e-005 gb|AAA17998.1| 20 kDa cyclophilin precursor 52 3e-005 emb|CAA69622.1| cyclophylin [Digitalis lanata] 52 4e-005 gb|ABB29940.1| cyclophilin-like [Solanum tuberosum] >gi|455... 52 4e-005 gb|AAB51386.1| stress responsive cyclophilin [Solanum comme... 52 4e-005 sp|P21568|CYPH_LYCES Peptidyl-prolyl cis-trans isomerase (P... 52 4e-005 >emb|CAC80550.1| cyclophilin [Ricinus communis] Length = 173
Identities = 23/30 (76%), Positives = 26/30 (86%) Frame = -3
+GEKG+GR GKPL YKGSSFHR+IP FM Q Sbjct: 42 TGEKGVGRSGKPLHYKGSSFHRVIPGFMCQ 71 Score = 38.5 bits (88), Expect = 0.34 Identities = 15/23 (65%), Positives = 20/23 (86%) Frame = -2 Query: 381 ANPKVFFDISINGSPAGRITFEV 313 ANPKVFFD+++ G+PAGRI E+ Sbjct: 3 ANPKVFFDMTVGGAPAGRIVMEL 25
Identities = 16/19 (84%), Positives = 17/19 (89%) Frame = -1
LFAD P+TAENFRALCTG Sbjct: 25 LFADTTPRTAENFRALCTG 43 ---------------- gnl|ti|818415787 name:POAA-aab23c11.b1 mate_pair:820218332 (901 letters)
Score E
Sequences producing significant alignments: (bits) Value gb|AAM34042.1| cyclic GMP-binding protein D [Dictyostelium ... 94 5e-018 ref|XP_640199.1| cyclic GMP-binding protein [Dictyostelium ... 94 5e-018 ref|XP_646480.1| Ras guanine nucleotide exchange factor [Di... 54 1e-005 gb|AAH86709.1| Zgc:101589 [Danio rerio] >gi|56693365|ref|NP... 51 6e-005 ref|XP_712727.1| hypothetical protein CaO19.6926 [Candida a... 50 1e-004 pir||S30356 CDC25 protein homolog - yeast (Candida albicans) 50 1e-004 ref|XP_503145.1| hypothetical protein [Yarrowia lipolytica]... 49 2e-004 ref|XP_645439.1| Ras guanine nucleotide exchange factor [Di... 49 2e-004 emb|CAA21435.1| ste6 [Schizosaccharomyces pombe] 48 4e-004 emb|CAA37345.1| ste6 [Schizosaccharomyces pombe] >gi|458152... 48 4e-004 >gb|AAM34042.1| cyclic GMP-binding protein D [Dictyostelium discoideum] Length = 1312
Identities = 58/157 (36%), Positives = 79/157 (50%) Frame = -2
LLS K+ + L++ D NFKNYR+ + V +EP IPYLG+FLTDYT+L ES P Sbjct: 459 LLSQKTNDMFQILNNLMTTDGNFKNYRKILTTVLPNEPCIPYLGLFLTDYTYLDESNP-- 516
SNLINIDR+ + T+++E L Sbjct: 517 --------------------------------SLSTDSNLINIDRIFLISTRVQEFFQLF 544
S+ +VR+AIL E++ D NE+F LSK+REE Sbjct: 545 TNCNYTFISNMSVRDAILGEKVWDENEIFRLSKIREE 581 ---------------------- gnl|ti|818415789 name:POAA-aab23d02.b1 mate_pair:820218335 (879 letters)
Score E
Sequences producing significant alignments: (bits) Value dbj|BAC88234.1| glr0293 [Gloeobacter violaceus PCC 7421] >g... 49 2e-004 ref|NP_191530.1| oxidoreductase [Arabidopsis thaliana] >gi|... 48 5e-004 ref|XP_473283.1| OSJNBa0081C01.19 [Oryza sativa (japonica c... 47 9e-004 ref|XP_473287.1| OSJNBa0081C01.23 [Oryza sativa (japonica c... 47 0.001 ref|XP_473030.1| OSJNBa0067K08.7 [Oryza sativa (japonica cu... 45 0.003 ref|XP_466643.1| putative carbonyl reductase 3 [Oryza sativ... 45 0.003 dbj|BAB72310.1| NADPH-dependent carbonyl reductase [Nostoc ... 45 0.003 ref|YP_323309.1| Short-chain dehydrogenase/reductase SDR [A... 45 0.003 gb|AAA65204.1| daunorubicin-doxorubicin polyketide synthase... 45 0.004 ref|YP_321499.1| Short-chain dehydrogenase/reductase SDR [A... 45 0.004 >dbj|BAC88234.1| glr0293 [Gloeobacter violaceus PCC 7421] ref|NP_923239.1| probable carbonyl reductase [Gloeobacter violaceus PCC 7421] Length = 243 Score = 49.3 bits (116), Expect = 2e-004 Identities = 26/49 (53%), Positives = 32/49 (65%) Frame = +3
+AVVTG NRG+G VSR+L G RV+LT+RDP AE K+Q G Sbjct: 14 LAVVTGGNRGIGFEVSRQLANFGHRVILTSRDPEQGKTAAE--KLQSEG 60 ------------------------ PP30_Resultat
mate_pair:820218359 (875 letters)
Score E
Sequences producing significant alignments: (bits) Value ref|YP_119289.1| putative oxidoreductase [Nocardia farcinic... 79 2e-013 ref|XP_636677.1| hypothetical protein DDB0219355 [Dictyoste... 79 3e-013 gb|AAO16681.3| monoamine oxidase [Danio rerio] 73 1e-011 gb|AAH70013.1| Monoamine oxidase [Danio rerio] >gi|47575847... 73 1e-011 gb|AAH81267.1| LOC446968 protein [Xenopus laevis] 73 1e-011 emb|CAG02640.1| unnamed protein product [Tetraodon nigrovir... 72 3e-011 pir||I51346 monoamine oxidase - rainbow trout >gi|728485|gb... 72 3e-011 sp|P49253|AOF_ONCMY Amine oxidase [flavin-containing] (Mono... 72 3e-011 ref|XP_699928.1| PREDICTED: hypothetical protein XP_694836 ... 69 2e-010 ref|XP_686310.1| PREDICTED: hypothetical protein XP_681218 ... 69 2e-010 >ref|YP_119289.1| putative oxidoreductase [Nocardia farcinica IFM 10152] dbj|BAD57925.1| putative oxidoreductase [Nocardia farcinica IFM 10152] Length = 463
Identities = 35/53 (66%), Positives = 37/53 (69%) Frame = +1
IEKDW EEYSRGCY PG LT G ALR P+G LHWA TE+ATRW G I Sbjct: 380 IEKDWADEEYSRGCYGAFTAPGTLTRFGHALRPPIGPLHWAGTETATRWAGYI 432 ----------- gnl|ti|820218360 name:POAA-aab23f04.g1 mate_pair:818415812 (893 letters)
Score E
Sequences producing significant alignments: (bits) Value ref|ZP_00282181.1| hypothetical protein Bcep02003108 [Burkh... 56 2e-006 ref|YP_045988.1| hypothetical protein ACIAD1295 [Acinetobac... 48 5e-004 ref|YP_392068.1| hypothetical protein Tcr_1802 [Thiomicrosp... 47 7e-004 emb|CAG01157.1| unnamed protein product [Tetraodon nigrovir... 35 3.5 gb|AAO79772.1| beta-galactosidase [Bacteroides thetaiotaomi... 34 5.9 ref|XP_502798.1| hypothetical protein [Yarrowia lipolytica]... 34 7.8 >ref|ZP_00282181.1| hypothetical protein Bcep02003108 [Burkholderia fungorum LB400] Length = 301 Score = 55.8 bits (133), Expect = 2e-006 Identities = 31/84 (36%), Positives = 44/84 (52%) Frame = +3
WE W Q G ++ + PE GP YLH+LP T PVADLW +N+W+GR+ Sbjct: 219 WEALWSAQ-IG-QGYTVTTMTPEFGPDGYLHTLPFTNAPVADLWEINTWMGREERRHLAA 276
F A + + F QA + ++L Sbjct: 277 FLAGRGAQQSQSHFNPQAAQASLL 300 Score = 37.0 bits (84), Expect = 0.92 Identities = 15/35 (42%), Positives = 23/35 (65%) Frame = +2 Query: 62 GILGYSDGPQVNDPSAPEWEMEVAIHFKWWKRVWA 166 G +GY GPQV P+APE+ +A H + W+ +W+ Sbjct: 190 GRVGYPQGPQVPHPAAPEYADCLASHQRIWEALWS 224 ---------- gnl|ti|818415815 name:POAA-aab23f08.b1 mate_pair:820218364 (521 letters)
Score E
Sequences producing significant alignments: (bits) Value emb|CAJ00344.1| chloramphenicol acetyltransferase [Aeromona... 279 3e-074 ----------- gnl|ti|820218364 name:POAA-aab23f08.g1 mate_pair:818415815 (883 letters)
Score E
Sequences producing significant alignments: (bits) Value pir||JQ1541 hypothetical 16.9K protein - Salmonella typhimu... 249 9e-065 --------
gnl|ti|820218382 name:POAA-aab23h02.g1 mate_pair:818415830 (901 letters)
Score E
Sequences producing significant alignments: (bits) Value ref|YP_217374.1| putative methylase [Salmonella enterica su... 47 7e-004 ref|NP_804337.1| hypothetical protein t0479 [Salmonella ent... 47 7e-004 ref|YP_149793.1| hypothetical protein SPA0479 [Salmonella e... 47 7e-004 ref|YP_170532.1| Adenine-specific methylase, HemK family [F... 45 0.003 gb|AAX77884.1| unknown protein [synthetic construct] 45 0.003 ref|ZP_00564703.1| Modification methylase HemK [Methylobaci... 44 0.008 ref|NP_416833.3| putative adenine-specific methylase [Esche... 44 0.008 ref|NP_311241.2| putative adenine-specific methylase [Esche... 44 0.008 gb|ABB66931.1| putative adenine-specific methylase [Shigell... 44 0.008 gb|ABB62599.1| putative adenine-specific methylase [Shigell... 44 0.008 >ref|YP_217374.1| putative methylase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gb|AAX66293.1| putative methylase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] Length = 310
Identities = 22/46 (47%), Positives = 38/46 (82%) Frame = -2
A +ISP+AL+VAE NI++HG+ H+ ++S+LF+++ P V++D+IV Sbjct: 161 AVDISPDALAVAEHNIEEHGLIHHVTPIRSDLFRDL-PKVQYDLIV 205 ---------------- gnl|ti|818415833 name:POAA-aab23h05.b1 mate_pair:820218385 (523 letters)
Score E
Sequences producing significant alignments: (bits) Value sp|P58777|CAT_KLESP Chloramphenicol acetyltransferase (CAT) 126 4e-028 --------
gnl|ti|818415175 name:POAA-aab24b03.b1 mate_pair:820217673 (894 letters)
Score E
Sequences producing significant alignments: (bits) Value emb|CAH01835.1| unnamed protein product [Kluyveromyces lact... 79 2e-013 gb|AAM19067.1| RNase L inhibitor-like protein [Oryza sativa... 79 3e-013 gb|AAL26702.1| 68 kDa protein HP68 [Triticum aestivum] 79 3e-013 ref|XP_635627.1| RNaseL inhibitor-like protein [Dictyosteli... 79 3e-013 gb|ABA94220.1| ABC transporter, putative [Oryza sativa (jap... 79 3e-013 emb|CAG59639.1| unnamed protein product [Candida glabrata C... 78 4e-013 ref|XP_500182.1| hypothetical protein [Yarrowia lipolytica]... 78 4e-013 gb|AAU09693.1| YDR091C [Saccharomyces cerevisiae] >gi|91487... 78 4e-013 emb|CAB78923.1| RNase L inhibitor-like protein [Arabidopsis... 78 5e-013 ref|NP_193656.2| ATRLI2 [Arabidopsis thaliana] >gi|23198180... 78 5e-013 >emb|CAH01835.1| unnamed protein product [Kluyveromyces lactis NRRL Y-1140] ref|XP_452984.1| unnamed protein product [Kluyveromyces lactis] Length = 607
Identities = 37/41 (90%), Positives = 39/41 (95%) Frame = -3
+RLPTPRPGQVLGLVGTNGIGKSTALK+LAGK KPNLG FE Sbjct: 95 HRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFE 135 Score = 56.6 bits (135), Expect = 1e-006 Identities = 26/33 (78%), Positives = 27/33 (81%) Frame = -1 Query: 762 LVLKGKLCIEVTPASKIAFISEELCIGCGICPK 664 +V GKLCIEV P SKIAFISE LCIGCGIC K Sbjct: 31 VVKTGKLCIEVMPTSKIAFISENLCIGCGICVK 63 Score = 53.1 bits (126), Expect = 1e-005 Identities = 23/33 (69%), Positives = 25/33 (75%) Frame = -3 Query: 523 KCPFEAINIINLPKDLAKDTTHRYGPNSFKLHR 425 KCPF+AI IINLP +L THRY NSFKLHR Sbjct: 64 KCPFDAIQIINLPTNLDSQVTHRYSANSFKLHR 96 --------------- gnl|ti|820217689 name:POAA-aab24c08.g1 mate_pair:818415192 (877 letters)
Score E
Sequences producing significant alignments: (bits) Value ref|XP_647783.1| hypothetical protein DDB0218127 [Dictyoste... 67 6e-010 ref|XP_656778.1| aminoalcoholphosphotransferase, putative [... 55 4e-006 gb|AAO50959.1| similar to Dictyostelium discoideum (Slime m... 48 4e-004 ref|XP_642821.1| hypothetical protein DDB0191335 [Dictyoste... 48 4e-004 ref|XP_643721.1| hypothetical protein DDB0217597 [Dictyoste... 45 0.003 gb|EAA77394.1| hypothetical protein FG09402.1 [Gibberella z... 42 0.036 gb|AAL46934.3| aminoalcoholphosphotransferase [Brassica rap... 41 0.047 ref|NP_172813.1| AAPT1 (AMINOALCOHOLPHOSPHOTRANSFERASE 1); ... 41 0.047 gb|AAB53764.1| aminoalcoholphosphotransferase [Brassica rapa] 41 0.047 gb|AAP51898.1| transposon protein, putative, CACTA, En/Spm ... 36 0.25 >ref|XP_647783.1| hypothetical protein DDB0218127 [Dictyostelium discoideum] gb|EAL68075.1| hypothetical protein DDB0218127 [Dictyostelium discoideum] Length = 409
Identities = 28/64 (43%), Positives = 43/64 (67%) Frame = -3
C+++++ M A+V + +R+G T I+G P WEEYH GIL+MG+FNGPTEAQ Sbjct: 123 CDALSVAMFAIVMSATLRIGPYWTFFSFIVGMWPFYLAHWEEYHAGILVMGEFNGPTEAQ 182
++ +
Sbjct: 183 VLFM 186 Score = 58.5 bits (140), Expect = 3e-007 Identities = 37/92 (40%), Positives = 45/92 (48%) Frame = -3 Query: 464 QILGALGGKSQRNIIRARISSSLGNPFHHHSDSKPIFRGGGGGRGSG*SARELCSHGLIN 285 Q L + GK R + + SS LG F H D+ + + I Sbjct: 96 QTLDNVDGKQAR---KTKSSSPLGELFDHVCDALSVAMFAIVMSATLRIGPYWTFFSFIV 152
G PFY AHWEEYH GIL+MG+FNGPTEA L Sbjct: 153 GMWPFYLAHWEEYHAGILVMGEFNGPTEAQVL 184 ------------------- gnl|ti|818415229 name:POAA-aab24f11.b1 mate_pair:820217726 (887 letters)
Score E
Sequences producing significant alignments: (bits) Value ref|NP_172217.1| PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTI... 61 6e-008 gb|AAB27811.1| PCNA [Brassica napus] >gi|2499441|sp|Q43124|... 60 1e-007 emb|CAA10108.1| proliferating cell nuclear antigen [Nicotia... 59 2e-007 gb|AAD19905.1| proliferating cell nuclear antigen II [Nicot... 59 2e-007 emb|CAD56690.1| proliferating cell nuclear antigen [Lycoper... 59 2e-007 sp|O82797|PCNA_TOBAC Proliferating cell nuclear antigen (PC... 59 2e-007 sp|Q00268|PCNA1_DAUCA Proliferating cell nuclear antigen (P... 59 2e-007 dbj|BAE47144.1| proliferating cell nuclear antigen [Botryll... 59 3e-007 gb|AAX27972.2| SJCHGC05965 protein [Schistosoma japonicum] 57 8e-007 ref|XP_658019.1| hypothetical protein AN0415.2 [Aspergillus... 56 2e-006 >ref|NP_172217.1| PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN); DNA binding / DNA polymerase processivity factor [Arabidopsis thaliana] gb|AAM19979.1| At1g07370/F22G5_23 [Arabidopsis thaliana] gb|AAL58911.1| At1g07370/F22G5_23 [Arabidopsis thaliana] gb|AAM63900.1| Proliferating cellular nuclear antigen 1 (PCNA 1) [Arabidopsis thaliana] gb|AAF79566.1| F22G5.29 [Arabidopsis thaliana] sp|Q9M7Q7|PCN1_ARATH Proliferating cellular nuclear antigen 1 (PCNA 1) Length = 263 Score = 60.8 bits (146), Expect = 6e-008 Identities = 26/47 (55%), Positives = 36/47 (76%) Frame = -3
V+ ANFDC+S G LQAMD +H ALV++LLR++GFE+Y C + +G Sbjct: 23 VNDANFDCSSTGFSLQAMDSSHVALVSLLLRSEGFEHYRCDRNLSMG 69 ----------------- gnl|ti|820217727 name:POAA-aab24f12.g1 mate_pair:818415230 (925 letters)
Score E
Sequences producing significant alignments: (bits) Value ref|XP_578859.1| PREDICTED: similar to hypothetical protein... 62 2e-008 gb|EAA16545.1| hypothetical protein [Plasmodium yoelii yoelii] 58 4e-007 gb|EAA21327.1| putative senescence-associated protein [Plas... 51 5e-005 ref|XP_767406.1| hypothetical protein GLP_748_1200_211 [Gia... 48 4e-004 emb|CAG01157.1| unnamed protein product [Tetraodon nigrovir... 37 0.75 gb|AAC47303.1| similar 37 0.98 gb|AAV37017.1| GH16921p [Drosophila melanogaster] 37 1.3 gb|AAF57008.2| CG7951-PA [Drosophila melanogaster] >gi|1312... 37 1.3 gb|AAM29524.1| RE59988p [Drosophila melanogaster] 36 1.7 gb|AAF50328.2| CG5133-PA [Drosophila melanogaster] >gi|6513... 36 1.7 >ref|XP_578859.1| PREDICTED: similar to hypothetical protein [Rattus norvegicus] Length = 135
Identities = 29/40 (72%), Positives = 33/40 (82%) Frame = +1
DEAFGYLKRV++TPAVYP + F HF+IQSTGQKS V T Sbjct: 74 DEAFGYLKRVIVTPAVYPRFIEFLHFDIQSTGQKSHRVNT 113 --------------- gnl|ti|818410911 name:POAA-aab25d01.g1 mate_pair:818410576 (911 letters)
Score E
Sequences producing significant alignments: (bits) Value gb|AAO51574.1| similar to Arabidopsis thaliana (Mouse-ear c... 58 4e-007 ref|XP_645553.1| hypothetical protein DDB0216865 [Dictyoste... 58 4e-007 emb|CAH01491.1| unnamed protein product [Kluyveromyces lact... 58 5e-007 ref|XP_758078.1| hypothetical protein UM01931.1 [Ustilago m... 55 3e-006 emb|CAG62410.1| unnamed protein product [Candida glabrata C... 55 4e-006 emb|CAI20998.1| REV3-like, catalytic subunit of DNA polymer... 54 8e-006 ref|XP_595591.2| PREDICTED: similar to DNA polymerase zeta ... 54 8e-006 ref|XP_870894.1| PREDICTED: similar to DNA polymerase zeta ... 54 8e-006 dbj|BAE36943.1| unnamed protein product [Mus musculus] 54 8e-006 ref|XP_228273.3| PREDICTED: similar to DNA polymerase zeta ... 54 8e-006 >gb|AAO51574.1| similar to Arabidopsis thaliana (Mouse-ear cress). Putative DNA polymerase zeta catalytic subunit (EC 2.7.7.7) [Dictyostelium discoideum] Length = 2650
Identities = 26/39 (66%), Positives = 33/39 (84%) Frame = -2
GRMPC+E+ D+IV TAR+TLE+AI+ VE +KEW AKV Y Sbjct: 2201 GRMPCIEIGDSIVQTARETLEAAIKIVESSKEWNAKVVY 2239 Score = 55.8 bits (133), Expect = 2e-006 Identities = 27/35 (77%), Positives = 29/35 (82%) Frame = -1 Query: 167 YGDTDSLFVLLPGASRERAFQIGNEIAAKVTSRIP 63 YGDTDSLFVLLPG SRE+AF+IG IA KVTS P Sbjct: 2239 YGDTDSLFVLLPGVSREKAFEIGQNIANKVTSLNP 2273 ------------------ gnl|ti|818410587 name:POAA-aab25e02.b1 mate_pair:818410924 (897 letters)
Score E
Sequences producing significant alignments: (bits) Value gb|ABB17069.1| chloramphenicol acetyl transferase [Moss gen... 445 e-124 gb|AAG41774.1| Cat [Promoter probe vector pPR9TT] 445 e-124 ---------- gnl|ti|818410924 name:POAA-aab25e02.g1 mate_pair:818410587 (877 letters) Score E
Sequences producing significant alignments: (bits) Value Yüklə 3,49 Mb. Dostları ilə paylaş:
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