Instream Flow Council Instream flow and stream ecology literature OctoberApril 104, 2016 hb

Arthington, A.H., J.L. Rall, M.J. Kennard, and B.J. Pusey. 2003. Environmental flow requirements of fish in Lesotho Rivers using the DRIFT methodology. River Research and Applications 19: 641-666. Doi: 10.1002/rra.728.
Arthington, A.H., R.S. Tharme, S.O. Brizga, B.J. Pusey, and M.J. Kennard. 2004. Environmental flow assessment with emphasis on holistic methodologies. Pp. 37-65 in: R. Welcomme and T. Petr’, editors. Proceedings of the Second International Symposium on the Management of Large Rivers for Fisheries Volume II. RAP Publication 2004/17. FAO Regional Office for Asia and the Pacific, Bangkok, Thailand.
Arthington, A.H., and J.M. Zalucki. 1998. Comparative evaluation of environmental flow assessment techniques: Review of methods. Occasional Paper 25/98. Land and Water Resources Research and Development Corporation, Canberra.
Arthur, S.M., B.F. Manly, L.L. McDonald, and G.W. Garner. 1996. Assessing habitat selection when availability changes. Ecology 77: 215-227.
Asaeda, T., T.K. Vu, and J. Manatunge. 2005. Effects of flow velocity on feeding behavior and microhabitat selection of the stone moroko Pseudorasbora parva: a trade-off between feeding and swimming costs. Transactions of the American Fisheries Society 134 (2): 537-547.
Ashmore, P.E., and T.J. Day. 1988. Effective discharge for suspended sediment transport in streams of the Saskatchewan River basin. Water Resources Research 24 (6): 864-870.
Ashton, D.T., J.B. Bettaso, and H.H. Welsh, Jr. 2015. Changes across a decade in size, growth, and body condition of western pond turtle (Actinemys [Emys] marmorata) populations on free-flowing and regulated forks of the Trinity River in northwest California. Copeia 103: 621-633. Doi: 10.1643/CP-15-253.
Ashton, M.J. 2012. Ecological responses to flow alteration: A literature review within

the context of the Maryland Hydroecological Integrity Assessment. Maryland

Department of Natural Resources, Monitoring and Non-Tidal Assessment Division.

RAS-MANTA-AIM-13-01, 45 p.

Ashton, M.J., and J.B. Layzer. 2010. Summer microhabitat use by adult and young-of-year snail darters (Percina tanasi) in two rivers. Ecology of Freshwater Fish 19: 609-617.
Ashwort, P.J., and R.I. Ferguson. 1989. Size-selective entrainment of bed load in gravel bed streams. Water Resources research 25 (4): 627-634.
Asplund, K.T., and M.T. Gooch. 1988. Geomorphology and the distributional ecology of Fremont cottonwood (Populus fremontii) in a desert riparian canyon. Desert Plants 9 (1): 17-27.
Astrade, L., and Y. Begin. 1997. Tree-ring response Populus tremula L. and Quercus robur L. to recent spring floods of the Saone River, France. Ecoscience 4: 232-239.
Atkinson, C.L., S.W. Golladay, S.P. Opsahl, and A.P. Covich. 2009. Stream discharge and floodplain connections affect seston quality and stable isotope signatures in a coastal plain stream. Journal of the North American Benthological Society 28: 360-370.
Atkinson, C.L., J.P. Julian, and C.C. Vaughn. 2014. Species and functions lost: role of drought in structuring stream communities. Biological. Conservation. 176: 30-38.
Auble, G.T. 2005. Great Basin riparian ecosystems: Ecology, management, and restoration (book review). Restoration Ecology 13 (1): 237-238.
Auble, G.T., J.M. Friedman, and M.L. Scott. 1991. Riparian vegetation of the Black Canyon of the Gunnison River, Colorado: composition and response to selected hydrologic regimes based on a direct gradient assessment model. U.S. Geological Survey, Ft. Collins, CO. 79 pp.
Auble, G.T., J.M. Friedman, and M.L. Scott. 1994. Relating riparian vegetation to present and future streamflows. Ecological Applications 4 (3): 544-554.
Auble, G.T., J.M. Friedman, and M.L. Scott. 1995. Regeneration processes and conservation of riparian forests in the Great Plains. Pp. 36-37 in: Proceedings of the biodiversity conservation strategies for the Great Plains symposium. Austin, TX: The Nature Conservancy.
Auble, G.T., J.M. Friedman, and M.L. Scott. 1996. Test of a hydroperiod relation to predict changes in riparian vegetation. Pp 25-26 in: From Big Rivers to Small Streams. Kansas City, Missouri: Society of Wetland Scientists.
Auble, G.T., J.M. Friedman, M.L. Scott, and L.S. Ischinger. 1994. Geomorphic processes determine instream flow effects on cottonwood regeneration. Washington, D.C.: U.S. Geological Survey. NBS Info. Bull. 83. 3 pp.
Auble, G.T., J.M. Friedman, M.L. Scott, and L.S. Ischinger. 1994. Modeling effects of flow alteration on riparian vegetation. Washington, D.C.: National Biological Survey. Research Info. Bull. 65. 3 pp.
Auble, G.T., and M.L. Scott. 1998. Fluvial disturbance patches and cottonwood recruitment along the upper Missouri River, Montana. Wetlands 18: 546-556.
Auble, G.T., M. Scott, J. Frazier, J.M. Friedman, J. Back, and V.J. Lee. 1997. Constraints on establishment of plains cottonwood in an urban riparian preserve. Wetlands 17 (1): 138-148.
Auble, G.T., M.L. Scott, and J.M. Friedman. 2005. Use of individualistic streamflow-vegetation relations along the Fremont River, Utah, USA, to assess impacts of flow alteration on wetland and riparian area. Wetlands 25 (1): 143-154.
Auble, G.T., M. Scott, J.L. Martin, L.S. Ischinger, and C.A. Segelquist. 1991. Predictive models of riparian vegetation response to altered streamflow. In: South Platte River Resource Management: Finding a Balance: Conference Proceedings of the Colorado Water Resources Research Institute, Information Series 66. Fort Collins, CO: Colorado State University.
Auble, G.T., M. Scott, P.A. Shafroth, and G.C. Lines. 1998. Responses of riparian cottonwoods to alluvial water-table declines. In: 1998 Fall Meeting American Geophysical Union, Eos, Transactions, AGU 79 (45). San Francisco, CA: American Geophysical Union.
Auer, N.A. 1996. Response of spawning lake sturgeons to change in hydroelectric facility operation. Transactions of the American Fisheries Society 125: 66-77. Doi:10.1577/1548-8659(1996)125<0066:ROSLST>2.3.CO;2.
Auer, N.A. 1996. Importance of habitat and migration to sturgeons with emphasis on lake sturgeon. Canadian Journal of Fisheries and Aquatic Sciences 53 (Supplement 1): 152-160. Doi:10.1139/cjfas-53-S1-152.
Auerbach, D.A., N.L. Poff, R.R. McShane, D.M. Merritt, M.I. Pyne, and T.K. Wilding. 2012. Streams past and future: fluvial responses to rapid environmental change in the context of historical variation. Pages 232-245 in: J.A. Wiens, GD. Hayward, H.D. Safford, and C. Giffen, editors, Historical Environmental Variation in Conservation and Natural Resource Management. Wiley-Blackwell, Oxford, UK.

Aufdenkampe, A.K., E. Mayorga, P.A. Raymond, J.M. Melack, S.C. Doney, S.R. Alin, R.E. Aalto, and K. Yoo. 2011. Riverine coupling of biogeochemical cycles between land, oceans, and atmosphere. Frontiers in Ecology and the Environment 9 (1): 53-60.

Ault, T.R., and R.W.G. White. 1994. Effects of habitat structure and the presence of brown trout on the population density of Galaxias truttaceus in Tasmania, Australia. Transactions of the American Fisheries Society 123: 939-949.
Aussenac, G., and G. Levy. 1992. Les exigences en eau du frene Fraxinus exelsior. Revue Forestiere Francaise 44: 32-38.
Austin, A.T., L. Yahdjian, J.M. Stark, J. Belnap, A. Porporato, U. Norton, D.A. Ravetta, and S.M. Schaeffer. 2004. Water pulses and biogeochemical cycles in arid and semiarid ecosystems. Oecologia 141: 221-235.
Austin, B.J., and E.A. Strauss. 2011. Nitrification and denitrification response to varying periods of desiccation and inundation in a western Kansas stream. Hydrobiologia 658: 183-195.
Austin, M.P. 2002. Spatial prediction of species distribution: an interface between ecological theory and statistical modelling. Ecological Modelling 157: 101-118.
Australia, Commonwealth of. 1996. National principles for the provision of water for ecosystems. Occasional paper SWR No. 3, Agriculture and Resource Management Council of Australia, and Australia and New Zealand Environmental and Conservation Council. Canberra, iv+14 pp.
Avery, L.A., J. Korman, W.R. Persons. 2015. Effects of increased discharge on spawning and age-0 recruitment of rainbow trout in the Colorado River at Lees Ferry, Arizona. North American Journal of Fisheries Management 35 (4): 671-680. Doi: 10.1080/02755947.2015.1040560.
Avery-Gomm, S., J.S. Rosenfeld, J.S. Richardson, and M. Pearson. 2014. Hydrological drought and the role of refugia in an endangered riffle-dwelling fish, Nooksack dace (Rhinichthys cataractae ssp.). Canadian Journal of Fisheries and Aquatic Sciences 71 (11): 1625-1634. Doi: 10.1139/cjfas-2013-0585.
Ayllon, D., A. Almodovar, G.G. Nicola, and B. Elvira. 2009. Interactive effects of cover and hydraulics on brown trout habitat selections patterns. River Research and Applications 25: 1051-1065. Doi: 10.1002/rra.1215
Ayllon, D., A. Almodovar, G.G. Nicola, and B. Elvira. 2010a. Ontogenetic and spatial variations in brown trout habitat selection. Ecology of Freshwater Fish 19: 420-432. Doi: 10.1111/j.1600-0633.2010.00426.x
Ayllon, D., A. Almodovar, G.G. Nicola, and B. Elvira. 2010. Modelling brown trout spatial requirements through physical habitat simulations. River Research and Applications 26: 1090-1102. Doi: 10.1002/rra.1315.
Ayllon, D., A. Almodovar, G.G. Nicola, and B. Elvira. 2011. The influence of variable habitat suitability criteria on PHABSIM habitat index results. River Research and Applications 28(8): 1179-188. Doi: 10.1002/rra.1496.
Ayllon, D., G.G. Nicola, I. Parra, B. Elvira, and A. Almodovar. 2013. Intercohort density dependence drives brown trout habitat selection. Acta Oecol. 46: 1-9. Doi: 10.1016/j.actao.2012.10.007.
Ayllon, D., G.G. Nicola, I. Parra, B. Elvira, and A. Almodovar. 2014. Spatiotemporal habitat selection shifts in brown trout populations under contrasting natural flow regimes. Ecohydrology 7: 569-579.
Baber, M.J., D.L. Childers, K.J. Babbitt, and D.H. Anderson. 2002. Controls on fish distribution and abundance in temporary wetlands. Canadian Journal of Fisheries and Aquatic Sciences 59 (9): 1441-1450.
Bachman, R.A. 1984. Foraging behavior of freeranging wild and hatchery brown trout in a stream. Transactions of the American Fisheries Society 113 (1): 132. Doi:10.1577/1548-8659(1984)113<1:FBOFWA>2.0.CO;2.
Bacon, P.J., W.S.C. Gurney, W. Jones, I.S. McLaren, and A.F. Youngson. 2005. Seasonal growth patterns of juvenile fish: partitioning variation among explanatory variables based on individual growth trajectories of Atlantic salmon (Salmo salar) parr. Journal of Animal Ecology 74: 1-11.
Bagliniere, J.L., and D. Arribe-Moutounet. 1985. Microdistribution of populations of brown trout (Salmo trutta L.) and juvenile Atlantic salmon (Salmo salar L.) and other species present in the upstream part of the Scorff River (Brittany). Hydrobiologia 120: 229-239.
Baigun, C.R.M. 2003. Characteristics of deep pools used by adult summer steelhead in Steamboat Creek, Oregon. North American Journal of Fisheries Management 23: 1167-1174.
Baigun, C.R., J. Sedell, and G. Reeves. 2000. Influence of water temperature in use of deep pools by summer steelhead in Steamboat Creek, Oregon (USA). Journal of Freshwater Ecology 15: 269-279.
Bailey, M.M., G.E. Horton, B.H. Letcher, and M.T. Kinnison. 2010. Seasonal density dependence in Atlantic salmon over varying spatial scales. Transactions of the American Fisheries Society 139 (6): 1642-1656. Doi: 10.1577/T09-121.1
Bain, M.B. 1995. Habitat at the local scale: multivariate patterns for stream fishes. Bull. Fr. Peche Piscic 337/338/339: 165-177.
Bain, M.B., and J.L. Bain. 1982. Habitat suitability index models: Coastal stocks of striped bass. U.S. Fish and Wildlife Service. FWS/OBS-82/10.1. 29 pp.
Bain, M.B., and J.M. Boltz. 1989. Regulated streamflow and warmwater stream fish: A general hypothesis and research agenda. Washington, D.C.: USFWS (Biological Report 89 [18]).
Bain, M.B., and J.T. Finn. 1982. An alternative approach to assessing habitat suitability for stream fish. Pp. 77-98 in: M.B. Bain, et al. (Eds.), An evaluation of methodologies for assessing

the effects of flow fluctuation on stream fish. U.S. Fish and Wildlife Service Biological Report 82 (63): 1-199. FWS/OBB3 82/63

Bain, M.B., and J.T. Finn. 1991. Analysis of microhabitat use by fish: investigator effect and investigator bias. Rivers 2 (1): 57-65.
Bain, M.B., J.T. Finn, and H.E. Booke. 1985. Quantifying stream substrate for habitat analysis studies. North American Journal of Fisheries Management 5: 499-506. Doi: 10.1577/1548-8659(1985)5<499:QSSFHA>2.).CO;2.
Bain, M.B., J.T. Finn, and H.E. Booke. 1988. Streamflow regulation and fish community structure. Ecology 69 (2): 382-392. Doi:10.2307/1940436.
Bain, M.B., J.T. Finn, L.J. Gerardi, Jr., M.R. Ross, and W.P. Saunders, Jr. 1982. An evaluation of methodologies for assessing the effects of flow fluctuations on stream fish. U.S. Fish and Wildlife Service Biological Report 82 (63): 1-199.
Bain, M.B., and V.T. Travnichek. 2000. Assessing impacts and predicting restoration benefits of flow alterations in rivers developed for hydroelectric power production. Pages B543-B552 in: M. Leclerc, H. Capra, S. Valentin, A. Boudreault, and Y. Cote, eds. Proceedings of the second IAHR symposium on habitat hydraulics, Ecohydraulics 2000. Institute National de la Recherche Scientifique-Eau, Ste-Foy, Quebec, Canada.
Bainbridge, R. 1958. The speed of swimming of fish as related to size and to the frequency and amplitude of the tail beat. Journal of Experimental Biology 35: 109-133.
Bainbridge, R. 1960. Speed and stamina in three fish. Journal of Experimental Biology 37: 129-153.
Baird, D., and J.J. Heymans. 1996. Assessment of ecosystem changes in response to freshwater inflow to the Kromme River estuary, St. Francis Bay, South Africa: a network analysis approach. Water SA 22: 307-318.
Baird, L.J., J.C. Stromberg, and T. Maddock. 2005. Linking riparian dynamics and groundwater: an ecohydrologic approach to modeling groundwater and riparian vegetation. Environmental Management 36: 551-564.
Baisre, J.A,, and Z. Arboleya. 2006. Going against the flow: effects on river damming in Cuban fisheries. Fish Res 81: 283-292.
Baker, D., D. McAdam, M. Boucher, K. Huynh, and C. Brauner. 2014. Swimming performance and larval quality are altered by rearing substrate at early life phases in white sturgeon, Acipenser transmontanus (Richardson, 1836). J. Appl. Ichthyol. 30 (6): 1461-1472. Doi: 10.1111/jai.12642.
Baker, D.B., R.P. Richards, T.T. Loftus, and J.W. Krame. 24. A new flashiness index: characteristics and applications to Midwestern rivers and streams. Journal of the American Water Resources Association 40: 503-522.
Baker, D.W., B.P. Bledsoe, C.M. Albano, and N.L. Poff. 2011. Downstream effects of diversion dams on sediment and hydraulic conditions of Rocky Mountain streams. River Res. Appl. 27: 388-401.
Baker, E.A. 2006. A landscape-based ecological classification for river valley segments in Michigan’s Upper Peninsula. Michigan Department of Natural Resources, Fisheries Research Paper 2085, Ann Arbor.
Baker, E.A., and T.G. Coon. 1997. Development and evaluation of alternative habitat suitability criteria for brook trout. Transactions of the American Fisheries Society 126 (1): 65-75.
Baker, J.A., K.J. Killgore, and R.L. Kasul. Aquatic habitats and fish communities in the lower Mississippi River. Reviews in Aquatic Sciences 3: 313-356.
Baker, J.A., and S.T. Ross. 1981. Spatial and temporal resource utilization by southeastern cyprinids. Copeia 1981: 178-189.
Baker, V.R. 1977. Stream channel response to floods with examples from central Texas. Geological Society of America Bulletin 88: 1057-1071.
Baker, V.R., R.C. Kochel, and P.C. Patton. 1988. Flood geomorphology. John Wiley and Sons, New York, New York, USA.
Baker, V.R., and D.F. Ritter. 1975. Competence of rivers to transport coarse bedload material. Geol. Soc. Am. Bull. 86: 975-978.
Baker, W.L. 1990. Climatic and hydrologic effects on the regeneration of Populus angustifolia James along the Animas River, Colorado. Journal of Biogeography 17 (1): 59-73.
Bakevich, B.D., C.L. Pierce, and M.C. Quist. 2013. Habitat, fish species, and fish assemblage associations of the Topeka shiner in west-central Iowa. North American Journal of Fisheries Management 33 (6)): 1258-1268. Doi: 10.1080/02755947.2013.839969.
Bakkala, R.G. 1970. Synopsis of biological data on the chum salmon Oncorhynchus keta (Walbaum) 1792. U.S. Fish Wildl. Serv., Cir. 315. 89 p.
Balasubramaniam, A.M., R.I. Hall, B.B. Wolfe, J.N. Sweetman, and X. Wang. 2015. Source water inputs and catchment characteristics regulate Limnological conditions of shallow subarctic lakes (Old Crow Flats, Yukon, Canada. Canadian Journal of Fisheries and Aquatic Sciences 72 (7): 1058-1072. Doi: 10/1139/cjfas-2014-0340.
Balcombe, S.R., and A.H. Arthington. 2009. Temporal changes in fish abundance in response to hydrological variability in a dryland floodplain river. Marine and Freshwater Research 60: 146-159.
Balcombe, S.R., A.H. Arthington, N.D. Foster, M.C. Thomas, G.G. Wilson, and S.E. Bunn. 2006. Fish assemblages of an Australian dryland river: abundance, assemblage structure and recruitment patterns in the Warrengo River, Murray-Darling Basin. Marine and Freshwater Research 57: 618-633.
Balcombe, S.R., A.H. Arthington, M.C. Thomas, and G.G. Wilson. 2011. Fish assemblage patterns across a gradient of flow regulation in an Australian dryland river system. River Research and Applications 27 (2): 168183. Doi: 10.1002/rra.1345
Balcombe, S.R., S.E. Bunn, A.H. Arthington, J.H. Fawcett, F.J. McKenzie-Smith, and A. Wright. 2007. Fish larvae, growth, and biomass relationships in an Australian arid zone river: links between floodplains and waterholes. Freshwater Biology 52: 2385-2398.
Balcombe, S.R., S.E. Bunn, F.J. McKenzie-Smith, and P.M. Davies. 2005. Variability of fish diets between dry and flood periods in an arid floodplain river. Journal of Fish Biology 67: 1552-1567.
Balcombe, S.R., J.S. Lobegeiger, S.M. Marshall, J.C. Marshall, D. Ly, and D.N. Jones. 2012. Fish body condition and recruitment success reflect antecedent flows in an Australian dryland river. Fisheries Science 78: 841-847.
Baldes, R.J. 1969. Microhabitat velocity occupied by trout. M.S. thesis, Colorado State University, Fort Collins. 33 pp.
Baldes, R.J., and R.E. Vincent. 1969. Physical parameters of microhabitats occupied by brown trout in an experimental flume. Transactions of the American Fisheries Society 98 (2): 230-238.
Baldrige, J.E., and D. Amos. 1981. A technique for determining fish habitat suitability criteria: a comparison between habitat utilization and availability. Pages 251258 in N.B. Armantrout, editor. Acquisition and utilization of aquatic habitat inventory information. Proceedings of a symposium, Portland, Oregon. American Fisheries Society, Western Division, Bethesda.
Baldwin, D.S., and A.M. Mitchell. 2000. The effects of drying and re-flooding on the sediment and soil nutrient dynamics of lowland river-floodplain systems: a synthesis. Regulated Rivers: Research and Management 16: 457-467.
Ballinger, A., and P.S. Lake. 2006. Energy and nutrient flux from rivers and streams into terrestrial food webs. Marine and Freshwater Research 57: 15-28.
Baltz, D.M., and P.B. Moyle. 1984. Segregation by species and size class of rainbow trout (Salmo gairdneri) and Sacramento sucker (Catostomus occidentalis) in three California streams. Environmental Biology of Fishes 10: 101-110.
Baltz, D.M., B. Vondracek, L.R. Brown, and P.B. Moyle. 1987. Influence of temperature on microhabitat choice by fishes in a California stream. Transactions of the American Fisheries Society 116 (1): 1220.
Baltz, D.M., B. Vondracek, L.R. Brown, and P.B. Moyle. 1991. Seasonal changes in microhabitat selection by rainbow trout in a small stream. Transactions of the American Fisheries Society 120 (2): 166176.
Ban, X., Y. Du, H.Z. Liu, and F. Ling. 2011. Applying Instream Flow Incremental Method for the spawning habitat protection of Chinese sturgeon (Acipenser sinensis). River Research and Applications 27 (1): 87-98. Doi: 10.1002/rra.1341
Bancroft, J.S., and P. Turchin. 2003. An experimental test of fragmentation and loss of habitat with Oryzaephilus surinamensis. Ecology 84 (7): 1756-1767.
Band, L.E., C.L. Tague, P. Groffman, et al. 2001. Forest ecosystem processes at the watershed scale: hydrological and ecological controls of nitrogen export. Hydrol. Process 15: 2013-2028.
Banish, N.P. 2003. Diel summer habitat use by bull trout, Salvelinus confluentus, in eastern Cascades streams. Master’s thesis, University of Georgia, Athens.
Banish, N.P., J.T. Peterson, and R.F. Thurow. 2008. Physical, biotic, and sampling influences on diel habitat use by stream-dwelling bull trout. North American Journal of Fisheries Management 28 (1): 176-187.
Banks, J.L., J. Li, and A.T. Herlihy. 2007. Influence of clearcut logging, flow duration, and season on emergent aquatic insects in headwater streams of the central Oregon Coast Range. J. N. Am. Benthol. Soc. 26: 620-632.
Banks, J.W. 1969. A review of the literature on the upstream migration of adult salmonids. Journal of Fish Biology 1: 85-136.
Baran, P., M. Delacoste, R. Dauba, J.-M. Lascaux, and A. Belaud. 1995. Effects of reduced flow on brown trout populations downstream of dams in the French Pyrenees. Regulated Rivers: Research and Management 10: 347-361. Doi: 10.1002/rra.2450100226
Baran, P., M. Delacoste, J.-M. Lascaux. 1997. Variability of mesohabitat used by brown trout populations in the French Central Pyrenees. Transactions of the American Fisheries Society 126: 747-757.
Baras, E. 1996. Selection of residence area and non-reproductive homing in a shoaling freshwater teleost, the barbel Barbus barbus (L). Pages 47-58 in: E. Baras and J.C. Philippart, editors, Proceedings of the 1^st Conference and Workshop on Fish Telemetry in Europe. University of Liege, Belgium.
Barbier, E.B., and J.H. Thompson. 1998. The value of water: Floodplain versus large-scale irrigation benefits in northern Nigeria. Ambio 27: 434-440.
Bardonnet, A. 2001. Spawning in swift water currents: implications for eggs and larvae. Archiv fur Hydrobiologie 135 (Supplement): 271-291.
Bardonnet, A., and J.-L. Bagliniere. 2000. Freshwater habitat of Atlantic salmon (Salmo salar). Canadian Journal of Fisheries and Aquatic Sciences 57 (2): 497-506. Doi: 10.1139/f99-226.
Bardonnet, A., P. Gaudin, and H. Persat. 1991. Microhabitats and downstream migration of young grayling (Thymallus thymallus L.). Freshwater Biology 26: 365-376.
Barinaga, M. 1996. A recipe for river recovery? Science 273: 1648-1650.
Barko, V.A., and D.P. Herzog. 2003. Relationships among side channels, fish assemblages, and environmental gradients in the unimpounded upper Mississippi River. Journal of Freshwater Ecology 18: 377-382.
Barko, V.A., D.P. Herzog, R.A. Hrabik, and J.S. Scheibe. 2004. Relationships among fish assemblages and main-channel-border physical habitats in the unimpounded upper Mississippi River. Transactions of the American Fisheries Society 133: 371-384.
Barko, V.A., D.P. Herzog, and M.T. O’Connor. 2006. Response of fishes to floodplain connectivity during and following a 500-year flood event in the unimpounded Upper Mississippi River. Wetlands 26: 244-257.
Barnard, S., R.J. Wyatt, and N.J. Milner. 1995. The development of habitat models for stream salmonids, and their application to fisheries management. Bull. Fr. Peche Piscic.337/338/339: 375-385.
Barnes, H.H. 1967. Roughness characteristics of natural channels. U.S. Geological Survey Water Supply Paper 1849.
Barnes, T.K., A.K. Volety, K. Chartier, F.J. Mazzotti, and L. Pearlstine. 2007. A habitat suitability index model for the eastern oyster (Crassostrea virginica), a tool for restoration of the Caloosahatchee Estuary, Florida. Journal of Shellfish Research. 26: 949–959 (http://crocdoc.ifas.ufl.edu/research/reports/HSI%20Oyster%20Final.pdf).