Instream Flow Council Instream flow and stream ecology literature May 26, 2014 hb

Angermeier, P.L. 1992. Predation by rock bass on other stream fishes: experimental effects of depth and cover. Environmental Biology of Fishes 34: 171-180. Doi: 10.1007/BF00002392.
Angermeier, P.L., and J.R. Karr. 1984. Relationships between woody debris and fish habitat in a small warmwater stream. Transactions of the American Fisheries Society 113: 716-726.
Angermeier, P.L., and I.J. Schlosser. 1989. Species-area relationships for stream fishes. Ecology 70 (5): 1450-1462.
Angradi, T.R.,, E.W. Schweiger, and D.W. Bolgrien. 2006. Inter-habitat variation in the benthos of the upper Missouri River (North Dakota, USA): implications for the Great River bioassessment. River Research and Applications 22: 755-773.
Angradi, T.R., D.L. Taylor, T.M. Jicha, D.W. Bolgrien, M.S. Pearson, and B.H. Hill. 2010. Littoral and shoreline wood in mid-continent great rivers (USA). River Research and Applications 26: 261-278.
Annable, W.K., V.G. Lownder, and C.C. Watson. 2011. Estimating channel-forming discharge in urban watercourses. River Research and Applications 27 (6): 738-753. Doi: 10.1002/rra.1391
Annear, T., I. Chisholm, H. Beecher, A. Locke, P. Aarrestad, N. Burkhart, C. Coomer, C. Estes, J. Hunt, R. Jacobson, G. Jobsis, J. Kauffman, J. Marshall, K. Mayes, C. Stalnaker, and R. Wentworth. 2002. Instream Flows for Riverine Resource Stewardship. Instream Flow Council, Cheyenne, WY.
Annear, T., I. Chisholm, H. Beecher, A. Locke, P. Aarrestad, C. Coomer, C. Estes, J. Hunt, R. Jacobson, G. Jobsis, J. Kauffman, J. Marshall, K. Mayes, G. Smith, R. Wentworth, and C. Stalnaker. 2004. Instream Flows for Riverine Resource Stewardship - Revised Edition. Instream Flow Council, Cheyenne, WY.
Annear, T.C., and A.L. Conder. 1984. Relative bias of several fisheries instream flow methods. North American Journal of Fisheries Management 4 (4B): 531-539.
Annear, T.C., W. Hubert, D. Simpkins, and L. Hebdon. 2002. Behavioural and physiological response of trout to winter habitat in tailwaters in Wyoming, USA. Hydrological Processes 16: 915-922.
Antolos, M., D.D. Roby, D.E. Lyons, K. Collis, A.F. Evans, M. Hawbecker, and B.A. Ryan. 2005. Caspian tern predation on juvenile salmonids in the mid-Columbia River. Transactions of the American Fisheries Society 134 (2): 466-480.
Antonnson, T., and S. Gudjonsson. 2002. Variability in timing and characteristics of Atlantic salmon smolt in Icelandic rivers. Transactions of the American Fisheries Society 131 (4): 643-655.
Antonnson, T., T. Heidarsson, and S.S. Snorrason. 2010. Smolt emigration and survival to adulthood in two Icelandic stocks of Atlantic salmon. Transactions of the American Fisheries Society 139 (6): 1688-1698. Doi: 10.1577/T08-200.1
Apse, C., M. DePhilip, J. Zimmerman, and M.P. Smith. 2008. Developing instream flow criteria to support ecologically sustainable water resource planning and management. Final report to the Pennsylvania Instream Flow Technical Advisory Committee. The Nature Conservancy, Harrisburg.
Araujo-Lima, C.A.R.M., and E.C. Oliveira. 1998. Transport of larval fish in the Amazon. Journal of Fish Biology 53: 297-306.
Ardisson, P.-L., and E. Bouget. 1997. A study of the relationship between freshwater runoff and benthic abundance: A scale-oriented approach. Estuarine, Coastal and Shelf Science 45: 535-545.
Arismendi, I., M. Safeeq, S.L. Johnson, J.B. Dunham, and R. Haggerty. 2012. Increasing synchrony of high temperature and low flow in western North American streams: double trouble for coldwater biota> Hydrobiologia doi: 10.1007/s10750-012-1327-2.
Armanini, D.G., W.A. Monk, D.E. Tenenbaum, D.L. Peters, and D.J. Baird. 2011. Influence of runoff regime type on a macroinvertebrate-based flow index in rivers of British Columbia (Canada). Ecohydrology 5: 414-423. Doi: 10.1002/eco.234.
Armitage, P.D. 1978. Downstream changes in the composition, numbers and biomass of bottom fauna in the Tees below Cow Green Reservoir and in an unregulated tributary Maize Beck, in the first five years after impoundment. Hydrobiologia 58 (2): 145-156.
Armitage, P.D. 1995. Faunal community change in response to flow manipulation. Pages 59-78 in: D.M. Harper and A.J.D. Ferguson, editors. The Ecological Basis for River Management. Wiley, Chichester.
Armitage, P.D., and M. Ladle. 1991. Habitat preferences of target species for application in PHABSIM testing. Pages 87-122 in: A. Bullock, A. Gustard, and E.S. Granger, editors, Instream Flow Requirements of Aquatic Ecology in Two British Rivers. Report 115. Institute of Hydrology, Wallingford.
Armitage, P.D., and G.E. Petts. 1992. Biotic score and prediction to assess the effects of water abstraction on river macroinvertebrates for conservation purposes. Aquatic Conservation 2: 1-17.
Armour, C.L. 1991. Evaluation of the instream flow incremental methodology by U.S. Fish and Wildlife Service field users. Fisheries 16: 36-43.
Armour, C.L, D.A. Duff, and W. Elmore. 1994. The effects of livestock grazing on western riparian and stream ecosystems. Fisheries 19: 9-12.
Armour, C.L. and J.G. Taylor. 1991. Evaluation of the Instream Flow Incremental Methodology by the U.S. Fish and Wildlife Service field users. Fisheries 16 (5): 36-43.
Armstrong, D.S., T.A. Richards, and S.L. Brandt. 2010. Preliminary assessment of factors influencing riverine fish communities in Massachusetts. U.S. Geological Survey Open-File Report 2010-1139. 43 pp.
Armstrong, D.S., T.A. Richards, and S.B. Levin. 2011. Factors influencing riverine fish assemblages in Massachusetts. U.S. Geological Survey Scientific-Investigations Report 2011-5193. 58 p. http://pubs.usgs.gov/sir/2011/5193/
Armstrong, D.S., T.A. Richards, and G.W. Parker. 2001. Assessment of habitat, fish communities, and streamflow requirements for habitat protection, Ipswich River, Massachusetts, 1998-99. U.S. Geological Survey Open-File Report 2010-1139. 43 pp.
Armstrong, J.D., V.A. Braithwaite, and M. Fox. 1998. The response of wild Atlantic salmon parr to acute reductions in water flow. Journal of Animal Ecology 67: 292-297.
Armstrong, J.D., and S.W. Griffiths. 2001. Density-dependent refuge use among over-wintering wild Atlantic salmon juveniles. Journal of Fish Biology 58: 1524-1530.
Armstrong, J.D., P.S. Kemp, G.J.A. Kennedy, M. Ladle, and N.J. Milner. 2003. Habitat requirements of Atlantic salmon and brown trout in rivers and streams. Fisheries Research 62: 143-170. Doi: 10.1016/S0165-7836(02)0160-1.
Armstrong, J.D., and K.H. Nislow. 2006. Critical habitat during the transition from maternal provisioning to independence in freshwater fish. Journal of Zoology 269: 403-413. Doi: 10.1111/j.1469-7998.2006.00157.x.
Armstrong, J.D., and K.H. Nislow. 2012. Modelling approaches for relating effects of change in river flow to populations of Atlantic salmon and brown trout. Fisheries Management and Ecology 19 (6): 527-536. Doi: 10.1111/j.1365-2400.2011.00835.x.
Armstrong N.E. 1982. Responses of Texas estuaries to freshwater inflows, p. 103-120 in: V. Kennedy (ed.), Estuarine Comparisons. Academic Press, New York.
Arndt, S.K.A., R.A. Cunjak, and T.J. Benfey. 2002. Effect of summer floods and spatial-temporal scale on growth and feeding of juvenile Atlantic salmon in two New Brunswick streams. Transactions of the American Fisheries Society 131 (4): 607-622.
Arnell, N.W. 1999. Climate change and global water resources. Global Environmental Change 9: S31-S49.
Arnold, J.G., and P.M. Allen. 1999. Validation of automated methods for estimating base flow and ground water recharge from streamflow records. Journal of the American Water Resources Association 35 (2): 411-424.
Arnold, J.G., R. Srinivasan, R.S. Muttiah, and J.R. Williams. 1998. Large area hydrologic modeling and assessment: model development, part I. Journal of the American Water Resources Association 34: 73-89.
Arntzen, E.V., D.R. Geist, and P.E. Dresel. 2006. Effects of fluctuating river flow on groundwater-surface water mixing in the hyporheic zone of a regulated, large cobble-bed river. River Research and Applications 22: 937-946.
Arp, C.D., M.N. Gooseff, M.A. Baker, and W. Wurtsbaugh. 2006. Surface-water hydrodynamics and regimes of a small mountain stream-lake ecosystem. J. Hydrol. (Amst.). 329 (3-4): 500-513. Doi: 10.1016/j.jhydrol.2006.03.006.
Arp, C.D., J.C. Schmidt, M.A. Baker, and A.K. Myers. 2007. Stream geomorphology in a mountain lake district: geometry, sediment sources and sinks, and downstream lake effects. Earth Surf. Process. Landf. 32 (4): 525-543. Doi: 10.1002/esp.1421
Arrigoni, A.S., G.C. Poole, L.A.K. Mertes, S.J. O’Daniel, W.W. Woesssner, and S.A. Thomas. 2008. Buffered, lagged, or cooled? Disentangling hyporheic influences on temperature cycles in stream channels. Water Resources Research 44: W09418. Doi: 10.1029/2007WR006480.

Arscott, D.B., K. Tockner, and J.V. Ward. 2001. Thermal heterogeneity along a braided floodplain river (Tagliamento River, northeastern Italy). Canadian Journal of Fisheries and Aquatic Sciences 58 (12): 2359-2373.

Arscott, D.B., K. Tockner, D. van der Nat, and J.V. Ward. 2002. Aquatic habitat dynamics along a braided alpine river ecosystem Arscott, D.B., K. Tockner, and J.V. Ward. (Tagliamento River, Northeast Italy). Ecosystem 5: 802-814.
Arthaud, D., C. Greene, K. Guilbault, and J. Morrow. 2010. Contrasting life-cycle impacts of stream flow on two Chinook salmon populations. Hydrobiologia 655: 171-188.
Arthington, A.H. 1998. Brisbane River trial of a flow restoration methodology (FLOWRESM). Pp. 35-50 in: A.H. Arthington and J.M. Zalucki, eds., Water for the Environment: Recent Approaches to Assessing and Providing Environmental Flows. AWWA, Brisbane.
Arthington, A.H. 1998. Comparative evaluation of environmental flow assessment techniques: review of holistic methodologies. Occasional Paper no 36/98. Land and Water Resources Development Corporation, Canberra, Australia.
Arthington, A.H. 2012. Environmental Flows: Saving Rivers in the Third Millennium. University of California Press. 424 pp.
Arthington, A.H., and S.R. Balcombe. 2011. Extreme hydrologic variability and the boom and bust ecology of fish in arid-zone floodplain rivers: a case study with implications for environmental flows, conservation and management. Ecohydrology 4: 708-720.
Arthington, A.H., S.R. Balcombe, G.A. Wilson, M.C. Thoms, and J.C. Marshall. 2005. Spatial and temporal variation in fish assemblage structure in isolated waterholes during the 2001 dry season of an arid-zone river, Cooper Creek, Australia. Marine and Freshwater Research 56: 25-35.
Arthington, A.H., E. Baran, C.A. Brown, P. Dugan, A.S. Halls, J.M. King, C.V. Minte-Vera, R.E. Tharme, and R.L. Welcomme. 2007. Water requirements of floodplain rivers and fisheries: existing decision support tools and pathways for development. Comprehensive Assessment of Water Management in Agriculture. Research Report 17, International Water Management Institute, Colombo, Sri Lanka. http://www.iwmi.cgiar.org/assessment/files_new/publications/CA%20Research%20Reports/CARR17.pdf.
Arthington, A.H., S.E. Bunn, N.L. Poff, and R.J. Naiman. 2006. The challenge of providing environmental flow rules to sustain river ecosystems. Ecological Applications 16 (4): 1311-1318.
Arthington, A.H., S.E. Bunn, B.J. Pusey, D.R. Bluhorn, J.M. King, J.A. Day, R.E. Tharme, and J.H. O’Keefe. 1992. Development of an holistic approach for assessing environmental flow requirements of riverine ecosystems. Pp. 69-76 in: J.J. Pigram and B.P. Hooper (editors), Proceedings of an International Seminar and Workshop on Water Allocation for the Environment. The Centre for Water Policy Research, Armisdale, Australia.
Arthington, A.H., J.M. King, J.H. O’Keefe, S.E. Bunn, J. Day, B.J. Pusey, B.R. Bluhdorn, and R. Tharme. 1992. Development of an holistic approach for assessing environmental flow requirements of riverine ecosystems. Pp. 69-76 in: J.J. Pigram and B.A. Hooper (eds.), Water Allocation for the Environment. The Centre for Water Policy Research, University of New England, Armidale (Australia).
Arthington, A.H., and R. Lloyd. 1998. Logan River trial of the building block methodology for assessing environmental flow requirements. Griffith University, Queensland, Australia.
Arthington, A.H., S.J. Mackay, C.S James, R.J. Rolls, D. Sternberg, A Barnes, and S.J. Capon. 2012. Ecological limits of hydrological alteration: a test of the ELOHA framework in south-east Queensland. National Water Commission (Australia): Waterlines Report Series No. 75.
Arthington, A.H., R.J. Naiman, M.E. McClain, and C. Nilsson. 2010. Preserving the biodiversity and ecological services of rivers: new challenges and research opportunities. Freshwater Biology 55 (1): 1-16. Doi:10.1111/j.1365-2427.2009.02340.x
Arthington, A.H.,/J.D. Olden, S.R. Balcombe, and M.C. Thoms. 2010. Multi-scale environmental factors explain fish losses and refuge quality in drying waterholes of Cooper Creek, an Australian arid-zone river. Marine and Freshwater Research 61 (8): 842-856.
Arthington, A.H., and B.J. Pusey. 1993. In-stream flow management in Australia: methods, deficiencies and future directions. Australian Biology 6: 52-60.
Arthington, A.H., and B.J. Pusey. 2003. Flow restoration and protection in Australian rivers. River Research and Applications 19: 377-395.
Arthington, A.H., B.J. Pusey, S.O. Brizga, R.O. McCosker, S.E. Bunn, and I.O. Growns. 1998. Comparative evaluation of environmental flow assessment techniques: R&D requirements. Land and Water Resources Research and Development Corporation, Occasional Papers 24/98.
Arthington, A.H., J.L. Rall, M.J. Kennard, and B.J. Pusey. 2003. Environmental flow requirements of fish in Lesotho Rivers using the DRIFT methodology. River Research and Applications 19: 641-666. Doi: 10.1002/rra.728.
Arthington, A.H., R.S. Tharme, S.O. Brizga, B.J. Pusey, and M.J. Kennard. 2004. Environmental flow assessment with emphasis on holistic methodologies. Pp. 37-65 in: R. Welcomme and T. Petr’, editors. Proceedings of the Second International Symposium on the Management of Large Rivers for Fisheries Volume II. RAP Publication 2004/17. FAO Regional Office for Asia and the Pacific, Bangkok, Thailand.
Arthington, A.H., and J.M. Zalucki. 1998. Comparative evaluation of environmental flow assessment techniques: Review of methods. Occasional Paper 25/98. Land and Water Resources Research and Development Corporation, Canberra.
Asaeda, T., T.K. Vu, and J. Manatunge. 2005. Effects of flow velocity on feeding behavior and microhabitat selection of the stone moroko Pseudorasbora parva: a trade-off between feeding and swimming costs. Transactions of the American Fisheries Society 134 (2): 537-547.
Ashmore, P.E., and T.J. Day. 1988. Effective discharge for suspended sediment transport in streams of the Saskatchewan River basin. Water Resources Research 24 (6): 864-870.
Ashton, M.J., and J.B. Layzer. 2010. Summer microhabitat use by adult and young-of-year snail darters (Percina tanasi) in two rivers. Ecology of Freshwater Fish 19: 609-617.
Ashwort, P.J., and R.I. Ferguson. 1989. Size-selective entrainment of bed load in gravel bed streams. Water Resources research 25 (4): 627-634.
Asplund, K.T., and M.T. Gooch. 1988. Geomorphology and the distributional ecology of Fremont cottonwood (Populus fremontii) in a desert riparian canyon. Desert Plants 9 (1): 17-27.
Astrade, L., and Y. Begin. 1997. Tree-ring response Populus tremula L. and Quercus robur L. to recent spring floods of the Saone River, France. Ecoscience 4: 232-239.
Atkinson, C.L., S.W. Golladay, S.P. Opsahl, and A.P. Covich. 2009. Stream discharge and floodplain connections affect seston quality and stable isotope signatures in a coastal plain stream. Journal of the North American Benthological Society 28: 360-370.
Auble, G.T. 2005. Great Basin riparian ecosystems: Ecology, management, and restoration (book review). Restoration Ecology 13 (1): 237-238.
Auble, G.T., J.M. Friedman, and M.L. Scott. 1991. Riparian vegetation of the Black Canyon of the Gunnison River, Colorado: composition and response to selected hydrologic regimes based on a direct gradient assessment model. U.S. Geological Survey, Ft. Collins, CO. 79 pp.
Auble, G.T., J.M. Friedman, and M.L. Scott. 1994. Relating riparian vegetation to present and future streamflows. Ecological Applications 4 (3): 544-554.
Auble, G.T., J.M. Friedman, and M.L. Scott. 1995. Regeneration processes and conservation of riparian forests in the Great Plains. Pp. 36-37 in: Proceedings of the biodiversity conservation strategies for the Great Plains symposium. Austin, TX: The Nature Conservancy.
Auble, G.T., J.M. Friedman, and M.L. Scott. 1996. Test of a hydroperiod relation to predict changes in riparian vegetation. Pp 25-26 in: From Big Rivers to Small Streams. Kansas City, Missouri: Society of Wetland Scientists.
Auble, G.T., J.M. Friedman, M.L. Scott, and L.S. Ischinger. 1994. Geomorphic processes determine instream flow effects on cottonwood regeneration. Washington, D.C.: U.S. Geological Survey. NBS Info. Bull. 83. 3 pp.
Auble, G.T., J.M. Friedman, M.L. Scott, and L.S. Ischinger. 1994. Modeling effects of flow alteration on riparian vegetation. Washington, D.C.: National Biological Survey. Research Info. Bull. 65. 3 pp.
Auble, G.T., and M.L. Scott. 1998. Fluvial disturbance patches and cottonwood recruitment along the upper Missouri River, Montana. Wetlands 18: 546-556.
Auble, G.T., M. Scott, J. Frazier, J.M. Friedman, J. Back, and V.J. Lee. 1997. Constraints on establishment of plains cottonwood in an urban riparian preserve. Wetlands 17 (1): 138-148.
Auble, G.T., M.L. Scott, and J.M. Friedman. 2005. Use of individualistic streamflow-vegetation relations along the Fremont River, Utah, USA, to assess impacts of flow alteration on wetland and riparian area. Wetlands 25 (1): 143-154.
Auble, G.T., M. Scott, J.L. Martin, L.S. Ischinger, and C.A. Segelquist. 1991. Predictive models of riparian vegetation response to altered streamflow. In: South Platte River Resource Management: Finding a Balance: Conference Proceedings of the Colorado Water Resources Research Institute, Information Series 66. Fort Collins, CO: Colorado State University.
Auble, G.T., M. Scott, P.A. Shafroth, and G.C. Lines. 1998. Responses of riparian cottonwoods to alluvial water-table declines. In: 1998 Fall Meeting American Geophysical Union, Eos, Transactions, AGU 79 (45). San Francisco, CA: American Geophysical Union.
Auer, N.A. 1996. Response of spawning lake sturgeons to change in hydroelectric facility operation. Transactions of the American Fisheries Society 125: 66-77. Doi:10.1577/1548-8659(1996)125<0066:ROSLST>2.3.CO;2.
Auer, N.A. 1996. Importance of habitat and migration to sturgeons with emphasis on lake sturgeon. Canadian Journal of Fisheries and Aquatic Sciences 53 (Supplement 1): 152-160. Doi:10.1139/cjfas-53-S1-152.
Auerbach, D.A., N.L. Poff, R.R. McShane, D.M. Merritt, M.I. Pyne, and T.K. Wilding. 2012. Streams past and future: fluvial responses to rapid environmental change in the context of historical variation. Pages 232-245 in: J.A. Wiens, GD. Hayward, H.D. Safford, and C. Giffen, editors, Historical Environmental Variation in Conservation and Natural Resource Management. Wiley-Blackwell, Oxford, UK.

Aufdenkampe, A.K., E. Mayorga, P.A. Raymond, J.M. Melack, S.C. Doney, S.R. Alin, R.E. Aalto, and K. Yoo. 2011. Riverine coupling of biogeochemical cycles between land, oceans, and atmosphere. Frontiers in Ecology and the Environment 9 (1): 53-60.

Ault, T.R., and R.W.G. White. 1994. Effects of habitat structure and the presence of brown trout on the population density of Galaxias truttaceus in Tasmania, Australia. Transactions of the American Fisheries Society 123: 939-949.
Aussenac, G., and G. Levy. 1992. Les exigences en eau du frene Fraxinus exelsior. Revue Forestiere Francaise 44: 32-38.
Austin, A.T., L. Yahdjian, J.M. Stark, J. Belnap, A. Porporato, U. Norton, D.A. Ravetta, and S.M. Schaeffer. 2004. Water pulses and biogeochemical cycles in arid and semiarid ecosystems. Oecologia 141: 221-235.
Austin, B.J., and E.A. Strauss. 2011. Nitrification and denitrification response to varying periods of desiccation and inundation in a western Kansas stream. Hydrobiologia 658: 183-195.
Austin, M.P. 2002. Spatial prediction of species distribution: an interface between ecological theory and statistical modelling. Ecological Modelling 157: 101-118.
Australia, Commonwealth of. 1996. National principles for the provision of water for ecosystems. Occasional paper SWR No. 3, Agriculture and Resource Management Council of Australia, and Australia and New Zealand Environmental and Conservation Council. Canberra, iv+14 pp.
Ayllon, D., A. Almodovar, G.G. Nicola, and B. Elvira. 2009. Interactive effects of cover and hydraulics on brown trout habitat selections patterns. River Research and Applications 25: 1051-1065. Doi: 10.1002/rra.1215
Ayllon, D., A. Almodovar, G.G. Nicola, and B. Elvira. 2010a. Ontogenetic and spatial variations in brown trout habitat selection. Ecology of Freshwater Fish 19: 420-432. Doi: 10.1111/j.1600-0633.2010.00426.x
Ayllon, D., A. Almodovar, G.G. Nicola, and B. Elvira. 2010. Modelling brown trout spatial requirements through physical habitat simulations. River Research and Applications 26: 1090-1102. Doi: 10.1002/rra.1315.
Ayllon, D., A. Almodovar, G.G. Nicola, and B. Elvira. 2011. The influence of variable habitat suitability criteria on PHABSIM habitat index results. River Research and Applications 28(8): 1179-188. Doi: 10.1002/rra.1496.
Baber, M.J., D.L. Childers, K.J. Babbitt, and D.H. Anderson. 2002. Controls on fish distribution and abundance in temporary wetlands. Canadian Journal of Fisheries and Aquatic Sciences 59 (9): 1441-1450.
Bachman, R.A. 1984. Foraging behavior of freeranging wild and hatchery brown trout in a stream. Transactions of the American Fisheries Society 113 (1): 132. Doi:10.1577/1548-8659(1984)113<1:FBOFWA>2.0.CO;2.
Bacon, P.J., W.S.C. Gurney, W. Jones, I.S. McLaren, and A.F. Youngson. 2005. Seasonal growth patterns of juvenile fish: partitioning variation among explanatory variables based on individual growth trajectories of Atlantic salmon (Salmo salar) parr. Journal of Animal Ecology 74: 1-11.
Baigun, C.R.M. 2003. Characteristics of deep pools used by adult summer steelhead in Steamboat Creek, Oregon. North American Journal of Fisheries Management 23: 1167-1174.
Baigun, C.R., J. Sedell, and G. Reeves. 2000. Influence of water temperature in use of deep pools by summer steelhead in Steamboat Creek, Oregon (USA). Journal of Freshwater Ecology 15: 269-279.
Bailey, M.M., G.E. Horton, B.H. Letcher, and M.T. Kinnison. 2010. Seasonal density dependence in Atlantic salmon over varying spatial scales. Transactions of the American Fisheries Society 139 (6): 1642-1656. Doi: 10.1577/T09-121.1
Bain, M.B. 1995. Habitat at the local scale: multivariate patterns for stream fishes. Bull. Fr. Peche Piscic 337/338/339: 165-177.
Bain, M.B., and J.L. Bain. 1982. Habitat suitability index models: Coastal stocks of striped bass. U.S. Fish and Wildlife Service. FWS/OBS-82/10.1. 29 pp.
Bain, M.B., and J.M. Boltz. 1989. Regulated streamflow and warmwater stream fish: A general hypothesis and research agenda. Washington, D.C.: USFWS (Biological Report 89 [18]).
Bain, M.B., and J.T. Finn. 1982. An alternative approach to assessing habitat suitability for stream fish. Pp. 77-98 in: M.B. Bain, et al. (Eds.), An evaluation of methodologies for assessing

the effects of flow fluctuation on stream fish. U.S. Fish and Wildlife Service Biological Report 82 (63): 1-199. FWS/OBB3 82/63

Bain, M.B., and J.T. Finn. 1991. Analysis of microhabitat use by fish: investigator effect and investigator bias. Rivers 2 (1): 57-65.
Bain, M.B., J.T. Finn, and H.E. Booke. 1985. Quantifying stream substrate for habitat analysis studies. North American Journal of Fisheries Management 5: 499-506. Doi: 10.1577/1548-8659(1985)5<499:QSSFHA>2.).CO;2.