Instream Flow Council Instream flow and stream ecology literature May 26, 2014 hb



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Lytle, D.A. 1999. Use of rainfall cues by Abedus herberti (Hemiptera: Belostomatidae): a mechanism for avoiding flash floods. Journal of Insect Behavior 12: 1-12.
Lytle, D.A. 2000. Biotic and abiotic effects of flash flooding in a montane desert stream. Archiv fur Hydrobiologie 150: 85-100.
Lytle, D.A. 2001. Disturbance regimes and life-history evolution. American Naturalist 157: 525-536.
Lytle, D.A. 2002. Flash floods and aquatic insect life-history evolution: evaluation of multiple models. Ecology 83 (2): 370-385.
Lytle, D.A., and D.M. Merritt. 2004. Hydrologic regimes and riparian forests: a structured population model for cottonwood. Ecology 85 (9): 2493-2503.
Lytle, D.A., and N.L. Poff. 2004. Adaptation to natural flow regimes. Trends in Ecology and Evolution 19: 94-100. Doi:10.1016/j.tree.2003.10.002.PMID:16701235.
Macdonald, J.S., C.A. King, and H. Herunter. 2010. Sediment and salmon: the role of spawning sockeye salmon in annual bed load transport characteristics in small, interior streams of British Columbia. Transactions of the American Fisheries Society 139 (3): 758-767. Doi:10.1577/T08-219.1.
Macdonald, J.S., J. Morison, and D.A. Patterson. 2012. The efficacy of reservoir flow regulation for cooling migration temperature for sockeye salmon in the Nechako River watershed of British Columbia. North American Journal of Fisheries Management 32 (3): 415-427. Doi: 10.1080/0275947.2012.675946.
Macdonald, J.S., D.A. Patterson, M.J. Hague, and I.C. Guthrie. 2010. Modeling the influence of environmental factors on spawning migration mortality for sockeye salmon fisheries management in the Fraser River, British Columbia. Transactions of the American Fisheries Society 139 (3): 768-782. Doi:10.1577/T08-223.1.
MacDonald, R.J., S. Boon, J.M. Byrne, M.D. Robinson, and J.B. Rasmussen. 2014. Potential future climate effects on mountain hydrology, stream temperature, and native salmonid life history. Canadian Journal of Fisheries and Aquatic Sciences 71 (2): 189-202. Doi: 10.1139/cjfas-2013-0221.
MacFarlane, R.B. 2010. Energy dynamics and growth of Chinook salmon (Oncorhynchus tshawytscha) from the Central Valley of California during the estuarine phase and first ocean year. Canadian Journal of Fisheries and Aquatic Sciences 67 (10): 1549-1565. Doi: 10.1139/F10-080
Maciolek, J.A., and P.R. Needham. 1952. Ecological effects of winter conditions on trout and trout foods in Convict Creek, California, 1951. Transactions of the American Fisheries Society 81: 202-217.
Macklin, M.G., G. Bento, K.J. Gregory, E. Johnstone, J. Lewin, D.J. Michczynska, R.L. Soja, L. Starkel, and V.R. Thorndycraft. 2006. Past hydrological events reflected in the Holocene fluvial record of Europe. Catena 66: 145-154.
MacLean, A., F.A. Huntingford, G.D. Ruxton, I.J. Morgan, J. Hamilton, and J.D. Armstrong. 2005. Testing the assumptions of the ideal despotic distribution with an unpredictable food supply: experiments in juvenile salmon. J. Anim. Ecol. 74 (2): 214-225. Doi: 10.1111/j.1365-2656.2005.00927.x.
MacLeod, N.A., and D.R. Barton. 1998. Effect of light intensity, water velocity, and species composition on carbon and nitrogen stable isotope ratios in periphyton. Canadian Journal of Fisheries and Aquatic Sciences 55: 1919-1925.
MacNutt, M.J., S.G. Hinch, A.P. Farrell, and S. Topp. 2004. The effect of temperature and acclimation period on repeat swimming performance in cutthroat trout. Journal of Fish Biology 65: 342-353.
MacNutt, M.J., S.G. Hinch, C.G. Lee, J.R. Phibbs, A.G. Lotto, M.C. Healey, and A.P. Farrell. 2006. Temperature effects on swimming performance, energetics, and aerobic capacities of mature adult pink salmon Oncorhynchus gorbuscha compared with those of sockeye salmon Oncorhynchus nerka. Canadian Journal of Zoology 84: 88-97. Doi: 10.1139/z05-181.
Madariaga, I. de, L. Gonzalez-Azpiri, F. Villate, and E. Orive. 1992. Plankton responses to hydrological changes induced by freshets in a shallow mesotidal estuary. Estuarine, Coastal and Shelf Science 35: 425-434.
Maddock, I. 1999. The importance of physical habitat assessment for evaluating river health. Freshwater Biology 41: 373-391.
Maddock, I.P., M.A. Bickerton, R. Spence, and T. Pickering. 2001. Reallocation of compensation releases to restore river flows and improve instream habitat availability in the upper Derwent catchment, Derbyshire, UK. Regulated Rivers: Research and Management 14: 417-441.
Maddock, I., and D. Bird. 1996. The application of habitat mapping to identify representative PHABSIM sites on the River Tavy, Devon UK. Pages 203-214 in: M. Leclerc, H. Capra, S. Valentin, A. Boudreault, and Y. Cote, editors, 2nd International Symposium on Habitat Hydraulics. IRS-EAU; FQSA; IAHR-AIRH, Quebec, Canada.
Maddock, I., M. Thoms, K. Jonson, F. Dyer, and M. Lintermans. 2004. Identifying the influence of channel morphology on physical habitat availability for native fish: application to the two-spined blackfish (Gadopsis bispinosus) in the Cotter River, Australia. Marine and Freshwater Research 55: 173-184. Doi: 10.1071/MF03114
Madej, M.A. 1999. Temporal and spatial variability in thalweg profiles of a gravel-bed river. Earth Surf. Processes 24: 1153-1169.

Madej, M.A., and V. Ozaki. 1996. Channel response to sediment wave propagation and movement, Redwood Creek, California, USA. Earth Surface Processes and Landforms 21: 911-927.


Madsen, T.V., and M. Sondergaard. 1983. The effects of current velocity on the photosynthesis of Callitriche stagnalis Scop. Aquatic Botany 15: 187-193.
Madsen, T.V., and E. Warncke. 1983. Velocities of currents around and within submerged aquatic vegetation. Archiv fur Hydrobiologie 97: 389-394.
Magalhaes, M.F., D.C. Batalha, and M.J. Collares-Pereira. 2002. Gradients in stream fish assemblages across a Mediterranean landscape: contributions of environmental factors and spatial structure. Freshw. Biol. 47: 1015-1031.
Magalhaes, M.F., P. Beja, I.J. Schlosser, and M.J. Collares-Pereira. 2007. Effects of multi-year droughts on fish assemblages of seasonally drying Mediterranean streams. Freshwater Biology 52: 1494-1510.
Magalhaes, M.F., I.J. Schlosser, and M.J. Collares-Pereira. 2003. The role of life history in the relationship between population dynamics and environmental variability in two Mediterranean stream fishes. Journal of Fish Biology 63: 300-317.
Magana, H.A. 2012. Habitat use of the Rio Grande silvery minnow (Hybognathus amarus) during a long-term flood pulse in the middle Rio Grande, New Mexico. Environ. Biol. Fish. 95 (2): 201-212. Doi: 10.1007/s10641-012-9977-5.
Magee, J.P., T.E. McMahon, and R.F. Thurow. 1996. Spatial variation in spawning habitat of cutthroat trout in a sediment-rich stream basin. Transactions of the American Fisheries Society 125: 768-779.
Magdaleno, F., and J. A. Fernandez. 2011. Hydromorphological alteration of a large Mediterranean river: Relative role of high and low flows on the evolution of riparian forests and channel morphology. River Research and Applications 27 (3): 374-387. Doi:10.1002/rra.1368
Magilligan, F.J. 1992. Thresholds and the spatial variability of flood power during extreme floods. Geomorphology 5: 373-390.
Magilligan, F.J., and K.H. Nislow. 2005. Changes in hydrologic regime by dams. Geomorphology 71: 61-78.
Magilligan, F.J., K.H. Nislow, G.B. Fisher, J. Wright, G. Mackey, and M. Laser. 2008. The geomorphic function and characteristics of large woody debris in low gradient rivers, coastal Maine, USA. Geomorphology 97 (3-4): 467-482.
Magilligan, F.J., J.D. Phillips, L.A. James, and B. Gomez. 1998. Geomorphic and sedimentological controls on the effectiveness of an extreme flood. Journal of Geology 106: 87-95.
Magirl, C.S., A.S. Gendaszek, C.R. Czuba, C.P. Konrad, and M.D. Marineau. 2012. Geomorphic and hydrologic study of peak-flow management of the Cedar River, Washington. USGS Open-File Report 2012-1240. http://pubs.usgs.gov/of/2012/1240/ofr20121240.pdf
Magoulick, D.D. 2000. Spatial and temporal variation in fish assemblages of drying stream pools: the role of abiotic and biotic factors. Aquatic Ecology 34: 29-41.
Magoulick, D.D., and R.M. Kobza. 2003. The role of refugia for fishes during drought: a review and synthesis. Freshwater Biology 48: 1186-1198.

Maheshwari, B.L., K.F. Walker, and T.A. McMahon. 1995. Effects of regulation on the flow regime of the River Murray, Australia. Regulated Rivers: Research and Management 10: 15-38.


Mahoney, J.M., and S.B. Rood. 1991. A device for studying the influence of declining water table on poplar growth and survival. Tree Physiology 8: 305-314.
Mahoney, J.M., and S.B. Rood. 1993. A model for assessing the effects of altered river flows on the recruitment of riparian cottonwoods. Pp. 228-232 in: Riparian Management: Common Threads and Shared Interests. U.S. Dept. Agric. For. Serv. Tech. Rep. RM 226.
Mahoney, J.M., and S.B. Rood. 1998. Streamflow requirements for cottonwood seedling recruitment: An integrative model. Wetlands 18: 634-645.
Maier, H.R., M.D. Burch, and M. Bormans. 2001. Flow management strategies to control blooms of the cyanobacterium, Anabaena circinalis, in the River Murray at Morgan, South Australia. Regul. Rivers: Res. Mgmt. 17 (6): 637-650.
Mains, E.M., and J.M. Smith. 1964. The distribution, size, time, and current preferences of seaward migrating chinook salmon in the Columbia and Snake rivers. Washington Department of Fisheries, Fisheries Research Papers 2 (3): 5-43.
Maki-Petays, A., J. Erkinaro, E. Niemala, A. Huusko, and T. Muotka. 2004. Spatial distribution of juvenile Atlantic salmon (Salmo salar) in a subarctic river: size-specific changes in a strongly seasonal environment. Canadian Journal of Fisheries and Aquatic Sciences 61 (12): 2329-2338.

Maki-Petays, A., A. Huusko, J. Erkinaro, and T. Muotka. 2002. Transferability of habitat suitability criteria of juvenile Atlantic salmon (Salmo salar). Canadian Journal of Fisheries and Aquatic Sciences 59 (2): 218-228.


Maki-Petays, A., T. Muotka, and A. Huusko. 1999. Densities of juvenile brown trout (Salmo trutta) in two subarctic rivers: assessing the predictive capability of habitat preference indices. Canadian Journal of Fisheries and Aquatic Sciences 56 (8): 1420-1427.
Maki-Petays, A., T. Muotka, A. Huusko, P. Tikkanen, and P. Kreivi. 1997. Seasonal changes in habitat use and preferences by juvenile brown trout, Salmo trutta, in a northern boreal river. Canadian Journal of Fisheries and Aquatic Sciences 54: 520-530. Doi:10.1139/cjfas-54-3-520.
Maki-Petays, A., T. Vehanen, and T. Muotka. 2000. Microhabitat use by age-0 brown trout and grayling: seasonal responses to streambed restoration under different flows. Transactions of the American Fisheries Society 129 (3): 771-781.
Malanson, G.P. 1993. Riparian landscapes. Cambridge University Press, Cambridge, U.K.
Malard, F., D. Ferreira, S. Doledec, and J.V. Ward. 2003. Influence of groundwater upwelling on the distribution of the hyporheos in a headwater river flood plain. Archiv fur Hydrobiologie 157: 89-116.
Malard, F., M. Lafont, M. Burgherr, and J.V. Ward. 2001. A comparison of longitudinal patterns in hyporheic and benthic oligochaete assemblages in a glacial river. Arctic, Antarctic, and Alpine Research 33: 457-466.
Malard, F., K. Tockner, and J.V. Ward. 1999. Shifting dominance of subcatchment water sources and flow paths in a glacial floodplain, Val Roseg, Switzerland. Arctic, Antarctic, and Alpine Research 31: 135-150.
Malard, F., K. Tockner, and J.V. Ward. 2000. Physico-chemical heterogeneity in a glacial riverscape. Landscape Ecology 15: 679-695.
Malard, F., U. Uehlinger, R. Zah, and K. Tockner. 2006. Flood-pulse and riverscape dynamics in a braided glacial river. Ecology 87 (3): 704-716.
Malcolm, I.A., C.N. Gibbins, C. Soulsby, D. Tetzlaff, and H.J. Moir. 2012. The influence of hydrology and hydraulics on salmonids between spawning and emergence: implications for the management of flows in regulated rivers. Fisheries Management and Ecology 19 (6): 464-474. Doi: 10.1111/j.1365-2400.2011.00836.x.
Malcolm, I.A., S.M. Greig, A.F. Youngson, and C. Soulsby. 2008. Hyporheic influences on salmon embryo survival and performance. Pages 249-274 in: D. Sear and P. DeVries, editors. Salmonid spawning habitat in rivers: Physical controls, biological responses and approaches to remediation. American Fisheries Society Symposium 65, Bethesda, MD/
Malcolm, I.A., C. Soulsby, A.F. Youngson, and D.M. Hannah. 2005. Catchment scale controls on groundwater-surface water interactions in the hyporheic zone: implications for salmon embryo survival. Rivers Research and Applications 21: 977-998.
Malcolm, I.A., C. Soulsby, A.F. Youngson, D.M. Hannah, I.S, McLaren, and A. Thorne. 2004. Hydrological influences on hyporheic water quality: implications for salmon egg survival. Hydrol. Process. 18 (9): 1543-1560. Doi:10.1002/hyp.1405.
Malcolm, I.A., A.F. Youngson, C. Soulsby, C. Imholt, and R.J. Fryer. 2011. Is interstitial velocity a good predictor of salmonid embryo survival? Transactions of the American Fisheries Society 140 (4): 898-904. Doi: 10.1080/00028487.2011.601216
Malcolm, I.A., A.F. Youngson, and C. Soulsby. 2003. Survival of salmonid eggs in gravel bed streams: effects of groundwater-surface water interactions. River Research and Applications 19: 303-316.
Mallen-Cooper, M., and I.G. Stuart. 2003. Age, growth, and non-flooded recruitment of two potadromous fishes in a large semi-arid/temperate river system. River Research and Applications 19: 697-719.
Malley, Z.J.U., M. Taeb, T. Matsumoto, and H. Takeya. 2008. Linking perceived land and water resources degradation, scarcity and livelihood conflicts in south-western Tanzania: implications for sustainable rural livelihood. Environmental Development Sustainability 10: 349-372.
Mallin, M.A., L.B. Cahoon, and M.J. Durako. 2005. Contrasting food-web support bases for adjoining river-influenced and non-river influenced continental shelf ecosystems. Estuar. Coast. Shelf Sci. 62 (1-2): 55-62. Doi: 10.1016/j.ecss.2004.08.006.
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Mallin, M.A.,, M.H. Posey, M.R. McIver, D.C. Parsons, S.H. Ensign, and T.D. Alphin. 2002. Impacts and recovery from multiple hurricanes in a piedmont-coastal plain river system. BioScience 52: 999-1010.
Malm Renofalt, B. 2004. Vegetation patterns and processes in riparian landscapes. Doctoral dissertation, Zurich, Switz.
Malm Renofalt, B., D.M. Merritt, and C. Nilsson. 2001. Connecting variation in vegetation and stream flow: the role of geomorphic context in vegetation response to large floods along arboreal rivers. J. Applied Ecology 44 (1): 147-157.
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Malone, T.C., L.H. Crocker, S.E. Pike, and B.W. Wendler. 1988. Influence of river flow on the dynamics of phytoplankton production in a partially stratified estuary. Marine Ecology Progress Series 48: 235-249.
Maloney, K.O., H.R. Dodd, S.E. Butler, and D.H. Wahl. 2008. Changes in macroinvertebrate and fish assemblages in a medium-sized river following a breach of a low-head dam. Freshwater Biology 53: 1055-1068.
Mancy, K.H. 1981. The environmental and ecological impacts of Aswan High Dam. In: H. Shuval, ed., Developments in Arid Zone Ecology and Environmental Quality. Balaban ISS, Philadelphia.
Manly, B.F.J., L.L. McDonald, and D.L. Thomas. 1993. Resource selection by animals: statistical design and analysis for field studies. Chapman and Hall, London, United Kingdom. 175 pp.
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Mann, K.A., and J.M. Holtgren. 2011. Comparing size, movement, and habitat selection of wild and streamside-reared lake sturgeon. North American Journal of Fisheries Management 31 (2): 305-314. Doi:10.1080/02755947.2011.576199
Mann, R.H.K. 1996. Environmental requirements of European non-salmonid fish in rivers. Hydrobiologia 323: 223-235.
Manners, R.B., M.W. Doyle, and M.J. Small. 2007. Structure and hydraulics of natural woody debris jams. Water Resources Research 43: 1-17.
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Manny, B.A., and G.W. Kennedy. 2002. Known lake sturgeon (Acipenser fulvescens) spawning habitat in the channel between Lakes Huron and Erie in the Laurentian Great Lakes. Journal of Applied Ichthyology 18: 486-490.
Mantua, N.J., S.R. Hare, Y. Zhang, J.M. Wallace, and R.C. Francis. 1997. A Pacific interdecadal climate oscillation with impacts on salmon production. Bulletin of the American Meteorological Society 78: 1069-1079.
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Marcarelli, A.M., and W.A. Wurtsbaugh. 2007. Effects of upstream lakes and nutrient limitation on periphyton biomass and nitrogen fixation in oligotrophic, subalpine streams. Freshw. Biol. 52 (11): 2211-2225. Doi: 10.1111/j.1365-2427.2007.01851.x
March, J.G., J.P. Benstead, C.M. Pringle, and F.N. Scatena. 1998. Migratory drift of larval freshwater shrimps in two tropical streams, Puerto Rico. Freshwater Biology 40: 261-273.
Marchetti, M.P., and P.B. Moyle. 2001. Effects of flow regime on fish assemblages in a regulated California stream. Ecological Applications 11: 530-539. Doi:10.1890/1051-0761(2001)011[0530:EOFROF]2.0.CO;2.
Marchildon, M.A., W.K. Annable, J.G. Imhof, and M. Power. 2011. A high-resolution hydrodynamic investigation of brown trout (Salmo trutta) and rainbow trout (Oncorhynchus mykiss) redds. River Research and Applications 27 (3): 345-359. Doi: 10.1002/rra.1362
Marcus, W.A. 2012. Remote sensing of the hydraulic environment in gravel-bed rivers. Pages 259-285 in: M. Church, P.M. Biron, and A.G. Roy (editors). Gravel-bed rivers: processes, tools, environments. Wiley, Chichester.
Maret, T.R., C.T., Robinson, and G.W. Minshall. 1997. Giannico, G.R. Fish assemblages and environmental correlates in least-disturbed streams of the upper Snake River basin. Transactions of the American Fisheries Society 126: 200-216.
Mark, A.F., and K.J.M. Dickinson. 2008. Maximizing water yield with indigenous non-forest vegetation: a New Zealand perspective. Frontiers in Ecology and the Environment 6 (1): 25-34.
Marks, J.C., M.E. Power, and M.S. Parker. 2000. Flood disturbance, algal productivity, and interannual variation in food chain length. Oikos 90: 20-27.
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Marti, E., N.B. Grimm, ad S.G. Fisher. 1997. Pre- and post-flood retention efficiency of nitrogen in a Sonoran Desert stream. Journal of the North American Benthological Society 16: 805-819.

Martin, C.W., J.W. Hornbeck, G.E. Likens, and D.C. Buso. 2000. Impacts of intensive harvesting on hydrology and nutrient dynamics of northern hardwood forests. Canadian Journal of Forest Research 57 (Suppl. 2): 1929.


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Martinson, E.C., J.H. Helle, D.L. Scarnecchia, and H.H. Stokes. 2008. Density-dependent growth of Alaska sockeye salmon in relation to climate-oceanic conditions, population abundance, and body size, 1925 to 1998. Mar. Ecol. Prog. Ser. 370: 1-18. Doi:10.3354/meps07665.
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