Instream Flow Council Instream flow and stream ecology literature May 26, 2014 hb



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Molles, M.C., C.S. Crawford, L.M. Ellis, H.M. Valett, and C.N. Dahm. 1998. Managed flooding for riparian ecosystem restoration. BioScience 48: 749-756.
Molles, M.C., Jr., and C.N. Dahm. 1990. A perspective on El Nino and La Nina: global implications for stream ecology. Journal of the North American Benthological Society 9: 68-76.
Molls, F. 1999. New insights into the migration and habitat use by bream and white bream in the floodplain of the Rhine River. Journal of Fish Biology 55: 1187-1200.

Monahan, J.T. 1991. Development of habitat suitability data for smallmouth bass (Micropterus dolomieui) and rock bass (Ambloplites rupestris). M.S. thesis, Michigan State University, East Lansing.


Monismith, S.G., W. Kimmerer, J.R. Burau, and M.T. Stacey. 2002. Structure and flow-induced variability of the subtidal salinity field in northern San Francisco Bay. J. Phys. Oceanogr. 32 (11): 3003-3019. Doi: 10.1175/1520-0485(2002)032<3003:SAFIVO>2.0.CO;2.
Monk, B., D. Weaver, C. Thompson, and F. Ossiander. 1989. Effects of flow and weir design on the passage behavior of American shad and salmonids in an experimental fish ladder. North American Journal of Fisheries Management 9: 60-67.
Monk, C.L, 1989. Factors that influence stranding of juvenile Chinook salmon and steelhead trout. Master’s thesis, University of Washington, Seattle.
Monk, W.A, P.J. Wood, and D.M. Hannah. 2007. Examining the influence of flow regime variability on instream ecology. Pages 165-184 in: P.J. Wood, D.M. Hannah, and J.P. Sadler, editors. Hydroecology and Ecohydrology: Past, present and future. Wiley & Sons. United Kingdom.
Monk, W.A, P.J. Wood, D.M. Hannah, and D.A. Wilson. 2007. Selection of river flow indices for the assessment of hydroecological change. River Research and Applications 23: 113-122.
Monk, W.A, P.J. Wood, D.M. Hannah, and D.A. Wilson. 2008. Macroinvertebrate community response to inter-annual and regional river flow regime dynamics. River Research and Applications 24: 988-1001.
Monk, W.A, P.J. Wood, D.M. Hannah, D.A. Wilson, C.A. Extence, and R.P. Chadd. 2006. Flow variability and macroinvertebrate community response within riverine systems. River Research and Applications 22: 595-615.
Monk, W.A, P.J. Wood, D.M. Hannah, and D.A. Wilson. 2007. Selection of river flow indices for the assessment of hydroecological change. River Research and Applications 23: 113-122.
Monnot, L., J.B. Dunham, T. Hoem, and P. Koetsier. 2008. Influences of body size and environmental factors on autumn downstream migration of bull trout in the Boise River, Idaho. North American Journal of Fisheries Management 28 (1): 231-240.
Montagna, P.A., M. Alber, P. Doering, and M.S. Connor. 2002. Freshwater inflow: science, policy, management. Estuaries 25 (6B): 1243-1245.
Montagna, P.A., and R.D. Kalke. 1992. The effect of freshwater inflow on meiofaunal and macrofaunal populations in the Guadalupe and Nueces estuaries, Texas. Estuaries 15: 307-326.
Montagna, P.A., R.D. Kalke, and C. Ritter. 2002. Effect of restored freshwater inflow on macrofauna and meiofauna in upper Rincon Bayou, Texas, USA. Estuaries 25 (6B): 1436-1447.
Montagna, P.A., and W.B. Yoon. 1991. The effect of freshwater inflow on meiofaunal consumption of sediment bacteria and microphytobenthos in San Antonio Bay, Texas, USA. Estuarine, Coastal and Shelf Science 33: 529-547.
Montague, C.L., and J. Ley. 1993. A possible effect of salinity fluctuation on abundance of benthic vegetation and associated fauna in northeastern Florida Bay. Estuaries 16 (4): 703-717. Doi: 10.2307/1352429.
Montalto, F.A., and T.S. Steenhuis. 2004. The link between hydrology and restoration of tidal marshes in the New York/New Jersey estuary. Wetlands 24 (2): 414-425. Doi: 10.1672/0277-5212(2004)024[0414:TLBHAR]2.0.CO;2.
Montgomery, D.R. 1999. Process domains and the river continuum. Journal of the American Water Resources Association 35: 397-410. Doi: 10.1111/j.1752-1688.1999.tb03598.x
Montgomery, D.R., T.B. Abbe, J.M. Buffington, N.P. Peterson, K.M. Schmidt, and J.D. Stock.

1996. Distribution of bedrock and alluvial channels in forested mountain drainage basins.



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Montgomery, D.R., E.M. Beamer, G.R. Pess, and T.P. Quinn. 1999. Channel type and salmonid spawning distribution and abundance. Canadian Journal of Fisheries and Aquatic Sciences 56: 377-387. Doi:10.1139/cjfas-56-3-377.
Montgomery, D.R., and J.M. Buffington. 1993. Channel classification, prediction of channel response, and assessment of channel condition. Washington State Department of Natural Resources, Timber/Fish/Wildlife Agreement, Report TFW-SH10-93-002, June 24, 1993, 84 pp.
Montgomery, D.R., and J.M. Buffington. 1997. Channel-reach morphology in mountain drainage basins. Bulletin Geological Society of America 109: 596-611.
Montgomery, D.R., and J.M. Buffington. 1998. Channel processes, classification and response. Pages 13-42 in: R. Naiman and R. Bilby, editors. River Ecology and Management. Springer-Verlag, New York.
Montgomery, D.R., J.M. Buffington, N.P. Peterson, D. SchuettHames, and T.P. Quinn. 1996. Streambed scour, egg burial depths, and the influence of salmonid spawning on bed surface mobility and embryo survival. Canadian Journal of Fisheries and Aquatic Sciences 53 (5): 10611070. Doi:10.1139/cjfas-53-5-1061.
Montgomery, D.R., J.M. Buffington, R.D. Smith, K.M. Schmidt, and G. Pess. 1995. Pool spacing in forest channels. Water Resources Research 31: 1097-1105.
Montgomery, D.R., B.D. Collins, J.M. Buffington, and T.B. Abbe. 2003. Geomorphic effects of wood in rivers. In: The ecology and management of wood in world rivers. Edited by S.V. Gregory, K.L. Boyer, and A.M. Gurnell. American Fisheries Society Symposium No. 37, Bethesda, Maryland. Pp. 21-47.
Montgomery, D.R., T.M. Massong, and C.S. Hawley. 2003. Influence of debris flows and log jams on the location of pools and alluvial channel reaches, Oregon Coast Range. Geological Society of America Bulletin 115: 78-88.
Montoya, J.V., D.L. Roelke, K.O. Winemiller, J.B. Cotner, and J.A. Snider. 2006. Hydrological seasonality and benthic algal biomass in a Neotropical floodplain river. Journal of the North American Benthological Society 25: 157-170.
Moog, O. 1993. Quantification of daily peak hydropower effects on aquatic fauna and management to minimize environmental impacts. Regulated Rivers: Research and Management 8: 5-14. Doi: 10.1002/rra.3450080105
Moore, G.A. 1944. Notes on the early life history of Notropis girardi. Copeia 1944: 209-214.
Moore, J.N., J.T. Harper, and M.C. Greenwood. 2007. Significance of trends toward earlier snowmelt runoff, Columbia and Missouri basin headwaters, western United States. Geophysical Research Letters 34: L16402. Doi: 10.1029/2007/GL031022.
Moore, J.W., D.E. Schindler, and C.P. Ruff. 2008. Habitat saturation drives thresholds in stream subsidies. Ecology 89 (2): 306-312.
Moore, K.M.S., and S.V. Gregory. 1988. Summer habitat utilization and ecology of cutthroat trout fry (Salmo clarki) in Cascade Mountain streams. Canadian Journal of Fisheries and Aquatic Sciences 45 (11): 19211930.
Moore, K.M.S., and S.V. Gregory. 1988. Response of young-of-the-year cutthroat trout to manipulation of habitat structure in a small stream. Transactions of the American Fisheries Society 117 (2): 162-170.
Moore, .D., and S.M. Wondzell. 2005. Physical hydrology and the effects of forest harvesting in the Pacific Northwest: a review. J. Am. Water Resour. Assoc. 41: 753-784.
Moore, M.R., A. Mulville, and M. Weinberg. 1996. Water allocation in the American West: endangered fish versus irrigated agriculture. Natural Resources Journal 36: 319-357.
Moore, S.L., and J.H. Thorp. 2008. Coping with Hydrogeomorphic variations in a prairie river: resiliency in young-of-the-year fishes. River Research and Application 24: 267-278.
Morantz, D.L., R.K. Sweeney, C.S. Shirvell, and D.A. Longard. 1987. Selection of microhabitat in summer by Atlantic salmon (Salmo salar). Canadian Journal of Fisheries and Aquatic Sciences 44 (1): 120-129.
Morgan, C.A., A. DeRobertis, and R.W. Zabel. 2005. Columbia river plume fronts. I. Hydrography, zooplankton distribution, and community composition. Mar. Ecol. Prog. Ser. 299: 19-31. Doi: 10.3354/meps299019.
Morgan, R.P., R.E. Jacobsen, S.B. Weisberg, L.A. McDowell, and H.T. Wilson. 1991. Effects of flow alteration on benthic macroinvertebrate communities below the Brighton Hydroelectric Dam. Journal of Freshwater Ecology 6: 419-429.
Morhardt, E.J., and E.G. Altouney. 1986. Instream flow methodologies. Research Project 2194-2, The Electric Power Research Institute, Palo Alto.
Morhardt, E.J., and E.G. Altouney. 1988. Instream Flow Methodologies and Requirements. Pages 710-718 in: Proceedings of Waterpower 1987, American Society of Civil Engineering, New York.
Morhardt, E.J., and D.F. Hanson. 1988. Habitat availability considerations in the development of suitability criteria. Pages 392403 in K. Bovee and J.R. Zuboy, editors. Proceedings of a workshop on the development of habitat suitability criteria. U.S. Fish and Wildlife Service, Biological Report 88 (11), Washington D.C.
Morhardt, J.E., D.F. Hanson, and P.J. Coulston. 1983. Instream flow analysis: increased accuracy using habitat mapping. Pp. 1294-1304 in: Waterpower 83: an international conference of hydropower. Tennessee Valley Authority, Norris, Tennessee.
Mori, T., and T. Saitoh. 2014. Flood disturbance and predator-prey effects on regional gradients in species diversity. Ecology 95 (1): 132-141.
Morin, A., P.-P. Harper, and R.H. Peters. 1986. Microhabitat-preference curves of blackfly larvae (Diptera: Simuliidae): a comparison of three estimation methods. Canadian Journal of Fisheries and Aquatic Sciences 43: 1235-1241.
Morin, A., and R.H. Peters. 1988. Effect of microhabitat features, seston quality, and periphyton on abundance of overwintering black fly larvae in southern Quebec. Limnology and Oceanography 33: 431-446.
Morin, J., M. Leclerc, Y. Secretan, and P. Boudreau. 2000. Integrated two-dimensional macrophytes - hydrodynamic modelling application to Lake Saint-Francois (St. Lawrence River, Quebec, Canada). Journal of Hydraulic Research (IAHR) 3 (38): 163-172.
Morinville, G.R., and J.B. Rasmussen. 2006. Does life-history variability in salmonids affect habitat use by juveniles? A comparison among streams open and closed to anadromy. Journal of Animal Ecology 75: 693-704.
Morris, A., J. Donovan, and M. Strager. 2009. Geospatial analysis of climatic and geomorphic interactions influenceing stream discharge, Appalachian Mountains, USA. Environmental Modeling and Assessment 14: 73-84.

Morris, S.E. 1992. Geomorphic assessment of effects of flow diversion on anadromous fish spawning habitat: Newhalem Creek, Washington. Professional Geographer 44 (4): 444-452.


Morrison, J., M.C. Quick, and M.G.G. Foreman. 2002. Climate change in the Fraser River watershed: flow and temperature projections. Journal of Hydrology 263: 230-244.
Morrison, R.R., R.H. Hotchkiss, M. Stone, D. Thurman, and A.R. Horner-Devine. 2009. Turbulence characteristics of flow in a spiral corrugated culvert fitted with baffles and implications for fish passage. Ecological Engineering 35:381-392.
Morrison, R.S. 1990. Recolonization of four small streams in central Scotland following drought conditions in 1984. Hydrobiologia 208: 261-267.
Morrongiello, J.R., D.A. Crook, A.J. King, D.S.L. Ramsey, and P. Brown. 2011. Impacts of drought and predicted effects of climate change on fish growth in temperate Australian lakes. Glob. Change Biol. 17 (2): 745-755, doi: 10.1111/j.1365-2486.2010.02259.x.

Mortazavi, B., R.L. Iverson, and W. Huang. 2001. Dissolved organic nitrogen and nitrate in Apalachicola Bay, Florida: spatial distributions and monthly budgets. Marine Ecology Progress Series 214: 79-91.


Mortazavi, B., R.L. Iverson, W. Huang, F.G. Lewis, and J.M. Caffrey. 2000. Nitrogen budget of Apalachicola Bay, a bar-built estuary in the northeastern Gulf of Mexico. Marine Ecology Progress Series 195: 1-14.
Mortazavi, B., R.L. Iverson, W.M. Landing, and W. Huang. 2000. Phosphorus budget of Apalachicola Bay: a river-dominated estuary in the northeastern Gulf of Mexico. Marine Ecology Progress Series 198: 33-42.
Mortazavi, B., R.L. Iverson, W.M. Landing, F.G. Lewis, and W. Huang. 2000. Control of phytoplankton production and biomass in a river-dominated estuary: Apalachicola Bay, Florida, USA. Marine Ecology Progress Series 198: 19-31.
Moscrip, A.L., and D.R. Montgomery. 1997. Urbanization, flood frequency, and salmon abundance in Puget Sound lowland streams. Journal of American Water Resources Association 33: 1289-1297.
Mosely, D.L., and C.A. Jennings. 2007. Flow preferences for juvenile robust redhorses in an experimental microcosm: implications for developing sampling periods. North American Journal of Fisheries Management 27 (4): 1383-1392.
Mosley, L.M., B. Zammit, E. Leyden, T.M. Heneker, M.R. Hipsey, D. Skinner, and K.T. Aldridge. 2012. The impact of extreme low flows on the water quality of the Lower Murray River and Lakes (South Australia). Water Resour. Manage. 26: 3923-3946.
Mosley, M.P. 1981. The influence of organic debris on a channel morphology and bedload transport in a New Zealand forest stream. Earth Surface Processes and Landforms 6: 571-579.
Mosley, M.P. 1982. Critical depths for passage in braided rivers, Canterbury, New Zealand. New Zealand Journal of Marine and Freshwater Research 16: 351-357. (http://www.rsnz.org/publish/nzjmfr/1982/36.php)
Mosley, M.P. 1982. Analysis of the effect of changing discharge on channel morphology and instream uses in a braided river: Ohau River. New Zealand Journal of Water Resources Research 18: 800-812.
Mosley, M.P. 1983. Response of braided rivers to changing discharge. Journal of Hydrology 22: 18-66.
Mosley, M.P. 1983. Flow requirements for recreation and wildlife in New Zealand rivers – a review. New Zealand J. Hydrol. 22: 152-174.
Mosley, M.P. 1985. River channel inventory, habitat and instream flow assessment. Prog. In Phys. Geog. 9: 494-523.
Mosley, M.P. 1992. River morphology. Pages 285-304 in: M.P. Mosley (editor). Waters of New Zealand. New Zealand Hydrological Society, Wellington.
Mosely, P.M., and C.P. Pearson. 1997. Floods and droughts: the New Zealand experience. The Caxton Press, Christchurch, New Zealand.
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Moulin, B., E.R. Schenk, and C.R. Hupp. 2011. Distribution and characterization of in-channel large wood in relation to geomorphic patterns on a low-gradient river. Earth Surface Processes and Landforms. Doi: 10.1002/esp.2135
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Mouton, A., et al. 2007. Concept and application of the usable volume for modeling the physical habitat of riverine organisms. River Research and Applications 23: 545-558.
Moyle, P.B., and D.M. Baltz. 1985. Microhabitat use by an assemblage of California stream fishes: developing criteria for instream flow determinations. Transactions of the American Fisheries Society 114 (5): 695704.
Moyle, P., M.P. Marchetti, J. Baldrige, and T.L. Taylor. 1998. Fish health and diversity: justifying flows for a California stream. Fisheries 23 (7): 6-15.
Moyle, P.B., J.G. Williams, and J.D. Kiernan. 2011. Improving environmental flow methods used in California Federal Energy Regulatory Commission relicensing. California Energy Commission, PIER. CEC-500-2011-037.
Muehlbauer, J.D., S.F. Collins, M.W. Doyle, and K. Tockner. 2014. How wide is a stream? Spatial extent of the potential “stream signature” in terrestrial food webs using meta-analysis. Ecology 95 (1): 44-55.
Mueller, A.J., and G.A. Matthews. 1987. Freshwater inflow needs of Matagorda Bay system, with focus on penaeid shrimp. NOAA Technical Memorandum No. NMFS-SEFC-189. National Marine Fisheries Service, Galveston, TX.
Mueller, G., P.C. Marsh, G. Knowles, and T. Wolters. 2000. Distribution, movements, and habitat use of razorback sucker Xyrauchen texanus in a lower Colorado River reservoir, Arizona-Nevada. Western North American Naturalist 60: 180-187.
Mugodo, J., M. Kennard, P. Liston, S. Nichols, S. Linke, R.H. Norris, and M. Lintermans. 2006. Local stream habitat variables predicted from catchment scale characteristics are useful for predicting fish distribution. Hydrobiologia 572: 59-70.
Muhlfield, C.C. 2002. Spawning characteristics of redband trout in a headwater stream in Montana. North American Journal of Fisheries Management 22 (4): 1314-1320.
Muhlfeld, C.C., D.H. Bennett, and B. Marotz. 2001. Fall and winter habitat use and movement by Columbia River redband trout in a small stream in Montana. North American Journal of Fisheries Management 21 (1): 170-177.
Muhlfeld, C.C., D.H. Bennett, and B. Marotz. 2001. Summer habitat use by Columbia River redband trout in the Kootenai River drainage, Montana. North American Journal of Fisheries Management 21 (1): 223-235.
Muhlfeld, C.C., S. Glutting, R. Hunt, D. Daniels, and B. Marotz. 2003. Winter diel habitat use and movement by subadult bull trout in the upper Flathead River, Montana. North American Journal of Fisheries Management 23 (1): 163-171. Doi: 10.1577/1548-8675(2003)023<0163:WDHUAM>2.0.CO;2
Muhlfeld, C.C., L. Jones, D. Kotter, W.J. Miller, D. Geise, J. Tohtz, and B. Marotz. 2011. Assessing the impacts of river regulation on native bull trout (Salvelinus confluentus) and westslope cutthroat trout (Oncorhynchus clarkii lewisi) habitats in the upper Flathead River, Montana, USA. River Research and Applications. Doi: 10.1002/rra.1494
Muhlfeld, C.C., and B. Marotz. 2005. Seasonal movement and habitat use by subadult bull trout in the upper Flathead River system, Montana. North American Journal of Fisheries Management 25 (3): 797-810. Doi: 10.1577/M04-045.1
Muhlfield, C.C., T.E. McMahon, D. Belcer, and J.L. Kershner. 2009. Spatial and temporal spawning dynamics of native westslope cutthroat trout, Oncorhynchus clarkii lewisi, introduced rainbow trout, Oncorhynchus mykiss, and their hybrids. Canadian Journal of Fisheries and Aquatic Sciences 66 (7): 1153-1168. Doi: 10.1139/F09-073
Mull, K.E., and M.A. Wilzbach. 2007. Selection of spawning sites by coho salmon in a northern California stream. North American Journal of Fisheries Management 27 (4): 1343-1354.
Mullner, S.A., and W.A. Hubert. 1995. Selection of spawning sites by kokanee and evaluation of mitigative spawning channels in the Green River, Wyoming. North American Journal of Fisheries Management 15: 174-184.
Mullner, S.A., W.A. Hubert, and T.A. Wesche. 1998. Snorkeling as an alternative to depletion electrofishing for estimating abundance and length-class frequencies of trout in small streams. North American Journal of Fisheries Management 18 (4): 947-953.
Mulvaney, T.M. 2009. Instream flows and the Public Trust. Tulane Environmental Law Journal 22: 315-

Mulvaney, T.M., and A.J. Park. 2008. Opportunities for protecting instream flows in Mississippi. Mississippi-Alabama Sea Gran Legal Program. MASGLP 08-007-14. 18 pp. http://www.masgc.org/pdf/masgp/08-007-14.pdf


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Muotka, T. 1993. Microhabitat use by predaceous stream insects in relation to seasonal changes in prey availability. Annales Zoologici Fennici 30: 287-297.
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Murchie, K.J., and K.E. Smokorowski. 2004. Relative activity of brook trout and walleyes in response to flow in a regulated river. North American Journal of Fisheries Management 24 (3): 1050-1057.
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