Webmaster's Note: As Gerard says below, his Fourth Report came in two parts
Yüklə 3,49 Mb.
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emb|CAI12455.1| coatomer protein complex, subunit alpha [Ho... 199 4e-050 dbj|BAE02266.1| unnamed protein product [Macaca fascicularis] 199 4e-050 ref|NP_001026576.1| coatomer protein complex, subunit alpha... 199 4e-050 gb|AAH82785.1| Copa protein [Mus musculus] 199 4e-050 gb|AAH75251.1| Copa-prov protein [Xenopus laevis] 199 4e-050 ref|XP_882838.1| PREDICTED: similar to Coatomer alpha subun... 199 4e-050 ref|XP_871186.1| PREDICTED: similar to Coatomer alpha subun... 199 4e-050 ref|XP_882751.1| PREDICTED: similar to Coatomer alpha subun... 199 4e-050 ref|XP_222899.3| PREDICTED: similar to Coatomer protein com... 199 4e-050 >emb|CAI12454.1| coatomer protein complex, subunit alpha [Homo sapiens] emb|CAI15005.1| coatomer protein complex, subunit alpha [Homo sapiens] Length = 1224 Score = 199 bits (505), Expect = 4e-050 Identities = 90/118 (76%), Positives = 106/118 (89%), Gaps = 1/118 (0%) Frame = -2
LEG +GV W +F HP PLIVSGADDRQVK+WRM+++KAWEV+T RGH+NNVSC +FH Sbjct: 201 LEGHDRGVNWAAF--HPTMPLIVSGADDRQVKIWRMNESKAWEVDTCRGHYNNVSCAVFH 258
PRQELILSNSEDK+IRVWDM+KRTG+QTFRR+HDRFW+LAAHP LNLFAAGHD GM++ Sbjct: 259 PRQELILSNSEDKSIRVWDMSKRTGVQTFRRDHDRFWVLAAHPNLNLFAAGHDGGMIV 316 Score = 55.1 bits (131), Expect = 9e-007 Identities = 26/69 (37%), Positives = 42/69 (60%) Frame = -2 Query: 345 SFPSHPPPLIVSGADDRQVKLWRMSDTKAWEVETFRGHFNNVSCVLFHPRQELILSNSED 166 +F H P I+S +DD+ +++W V T GH + V C FHP ++L++S S D Sbjct: 99 TFFHHEYPWILSASDDQTIRVWNWQSRTCVCVLT--GHNHYVMCAQFHPTEDLVVSASLD 156
+T+RVWD++ Sbjct: 157 QTVRVWDIS 165 Score = 52.4 bits (124), Expect = 6e-006 Identities = 29/88 (32%), Positives = 42/88 (47%) Frame = -2 Query: 324 PLIVSGADDRQVKLWRMSDTKAWEVETFRGHFNNVSCVLFHPRQELILSNSEDKTIRVWD 145 PL VSG DD ++K+W + + T GH + + FH ILS S+D+TIRVW+ Sbjct: 64 PLFVSGGDDYKIKVWNYKLRRC--LFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRVWN 121
RT + + HP +L Sbjct: 122 WQSRTCVCVLTGHNHYVMCAQFHPTEDL 149 Score = 33.5 bits (75), Expect = 2.8 Identities = 34/115 (29%), Positives = 50/115 (43%), Gaps = 13/115 (11%) Frame = -2 Query: 384 TFLEGSRQGVKWGSFPSHPP-PLIVSGADDRQVKLW--RMSDTKAWEVETFRGHFNNVSC 214 T E VK SF HP P I++ + ++LW RM ++ F H V Sbjct: 3 TKFETKSARVKGLSF--HPKRPWILTSLHNGVIQLWDYRMCTL----IDKFDEHDGPVRG 56
+ FH +Q L +S +D I+VW+ R I+T H+ WIL+A Sbjct: 57 IDFHKQQPLFVSGGDDYKIKVWNYKLRRCLFTLLGHLDYIRTTFFHHEYPWILSA 111 -------------------------------------------------------------------- gnl|ti|820219753 name:POAA-aaa19c10.g1 mate_pair:818421155 (908 letters) Score E
Sequences producing significant alignments: (bits) Value ref|XP_469514.1| putative alpha-coat protein [Oryza sativa]... 97 6e-019 ref|XP_469513.1| putative alpha-coat protein [Oryza sativa]... 97 6e-019 gb|AAS58474.1| coatomer alpha subunit [Hordeum vulgare subs... 97 8e-019 ref|NP_179734.1| protein transporter/ transporter [Arabidop... 96 2e-018 ref|NP_176393.1| protein transporter/ transporter [Arabidop... 96 2e-018 gb|EAA14358.1| ENSANGP00000002872 [Anopheles gambiae str. P... 96 2e-018 ref|NP_728648.1| CG7961-PB, isoform B [Drosophila melanogas... 95 3e-018 emb|CAA09492.1| coatomer alpha subunit [Drosophila melanoga... 95 3e-018 ref|XP_623198.1| PREDICTED: similar to ENSANGP00000002872 [... 95 3e-018 emb|CAF91036.1| unnamed protein product [Tetraodon nigrovir... 94 5e-018 >ref|XP_469514.1| putative alpha-coat protein [Oryza sativa] gb|AAK18837.1| putative alpha-coat protein [Oryza sativa] Length = 1218 Score = 97.4 bits (241), Expect = 6e-019 Identities = 42/52 (80%), Positives = 48/52 (92%) Frame = +3
MLTKFE+KSNRVKGL FHP RPW+LASLHSG+IQ+WDYR+ TLL +FDEHDG Sbjct: 1 MLTKFETKSNRVKGLSFHPRRPWILASLHSGVIQMWDYRMGTLLDRFDEHDG 52 -------------------------------------------------------------------- gnl|ti|820219755 name:POAA-aaa19c14.g1 (592 letters) Score E Sequences producing significant alignments: (bits) Value ref|ZP_00374729.1| conserved hypothetical protein [Wolbachi... 74 3e-012 gb|AAB59124.1| 10.2 kd ORF [Plasmid ColE1] >gi|9507257|ref|... 53 6e-006 sp|P03851|YPB3_ECOLI Hypothetical 9.4 kDa protein 40 0.038 ref|ZP_00705386.1| COG1187: 16S rRNA uridine-516 pseudourid... 33 6.0 ref|YP_257849.1| methyl-accepting chemotaxis protein [Pseud... 33 7.9 >ref|ZP_00374729.1| conserved hypothetical protein [Wolbachia endosymbiont of Drosophila ananassae] gb|EAL57752.1| conserved hypothetical protein [Wolbachia endosymbiont of Drosophila ananassae] Length = 63 Score = 73.9 bits (180), Expect = 3e-012 Identities = 37/39 (94%), Positives = 39/39 (100%) Frame = -1
SEKE+VALDPANKPP+VAVVFLFASSRLRAEKKDLKKIL Sbjct: 25 SEKELVALDPANKPPLVAVVFLFASSRLRAEKKDLKKIL 63 ------------------------------------------------------ gnl|ti|818421164 name:POAA-aaa19e06.b1 mate_pair:820219763 (877 letters) Score E
Sequences producing significant alignments: (bits) Value gb|AAW45872.1| Glycogen debranching enzyme, putative [Crypt... 67 1e-009 ref|XP_610064.2| PREDICTED: similar to amylo-1,6-glucosidas... 65 4e-009 dbj|BAD92104.1| amylo-1,6-glucosidase, 4-alpha-glucanotrans... 64 5e-009 gb|AAH78663.1| AGL protein [Homo sapiens] >gi|6580116|dbj|B... 64 5e-009 dbj|BAC26193.1| unnamed protein product [Mus musculus] 64 5e-009 ref|XP_131166.4| PREDICTED: amylo-1,6-glucosidase, 4-alpha-... 64 5e-009 ref|XP_342332.2| PREDICTED: similar to Amylo-1,6-glucosidas... 64 5e-009 emb|CAG11648.1| unnamed protein product [Tetraodon nigrovir... 64 5e-009 emb|CAF87833.1| unnamed protein product [Tetraodon nigrovir... 64 5e-009 ref|XP_637161.1| hypothetical protein DDB0219237 [Dictyoste... 61 4e-008 >gb|AAW45872.1| Glycogen debranching enzyme, putative [Cryptococcus neoformans var. neoformans JEC21] gb|EAL18619.1| hypothetical protein CNBJ0440 [Cryptococcus neoformans var. neoformans B-3501A] ref|XP_567389.1| Glycogen debranching enzyme, putative [Cryptococcus neoformans var. neoformans JEC21] Length = 1593 Score = 66.6 bits (161), Expect = 1e-009 Identities = 29/36 (80%), Positives = 30/36 (83%) Frame = +3
RYNCGTWMDKMG S A N+G PATPR GAPIEITG Sbjct: 1302 RYNCGTWMDKMGSSEKAGNKGLPATPRDGAPIEITG 1337
Identities = 14/37 (37%), Positives = 25/37 (67%) Frame = +2
++ AG +D M+++GFN I ++ E G ++GGN Y+ Sbjct: 1268 EYNAGPNLDMDMRDEGFNQKIWVDWETGIIFGGNRYN 1304 Score = 34.7 bits (78), Expect = 4.4 Identities = 17/29 (58%), Positives = 22/29 (75%) Frame = +3 Query: 54 TLAELVHEILQKHASGIHFREVLNPPPSL 140 ++AEL+ EILQ+HA GI FRE N P+L Sbjct: 1248 SVAELIQEILQRHAEGIEFRE-YNAGPNL 1275
gnl|ti|818421170 name:POAA-aaa19e20.b1 mate_pair:820219770 (672 letters) Score E Sequences producing significant alignments: (bits) Value ref|NP_913521.1| unnamed protein product [Oryza sativa (jap... 47 5e-004 ref|XP_872127.1| PREDICTED: similar to elaC homolog 2 isofo... 47 7e-004 ref|XP_586182.2| PREDICTED: similar to elaC homolog 2 isofo... 47 7e-004 ref|NP_001009034.1| elaC homolog 2 [Pan troglodytes] >gi|10... 46 0.001 ref|NP_724916.1| CG3298-PB [Drosophila melanogaster] >gi|21... 45 0.002 gb|AAN31930.1| unknown protein [Arabidopsis thaliana] 45 0.002 gb|AAN75377.1| ELAC2 [Macaca fascicularis] >gi|41017751|sp|... 45 0.002 gb|AAN75376.1| ELAC2 [Rattus norvegicus] >gi|27229304|ref|N... 45 0.002 emb|CAI24608.1| elaC homolog 2 (E. coli) [Mus musculus] 45 0.002 emb|CAI24609.1| elaC homolog 2 (E. coli) [Mus musculus] 45 0.002 >ref|NP_913521.1| unnamed protein product [Oryza sativa (japonica cultivar-group)] Length = 805 Score = 47.0 bits (110), Expect = 5e-004 Identities = 22/40 (55%), Positives = 27/40 (67%) Frame = -2
N GEG+QR EH IKLSKI+H+FLT + GG P L+ Sbjct: 45 NAGEGLQRFCTEHKIKLSKIDHIFLTRVCSETAGGLPGLV 84 ---------------------------------------------------- gnl|ti|818421177 name:POAA-aaa19g14.b1 mate_pair:820219779 (569 letters) Score E
Sequences producing significant alignments: (bits) Value gb|AAD29853.1| pugilistDominant [Drosophila melanogaster] 54 2e-006 gb|AAD29852.1| pugilistDominant [Drosophila melanogaster] 50 4e-005 emb|CAE70042.1| Hypothetical protein CBG16473 [Caenorhabdit... 48 2e-004 ref|YP_382522.1| hypothetical protein Syncc9605_2228 [Synec... 45 0.001 ref|XP_502130.1| hypothetical protein [Yarrowia lipolytica]... 42 0.012 emb|CAE56240.1| Hypothetical protein CBG23877 [Caenorhabdit... 40 0.059 gb|AAX26700.1| SJCHGC09461 protein [Schistosoma japonicum] 37 0.50 ref|ZP_00591473.1| hypothetical protein PaesDRAFT_1876 [Pro... 35 1.9 emb|CAE73978.1| Hypothetical protein CBG21607 [Caenorhabdit... 35 1.9 dbj|BAE04750.1| unnamed protein product [Staphylococcus hae... 34 2.5 >gb|AAD29853.1| pugilistDominant [Drosophila melanogaster] Length = 179
Identities = 28/43 (65%), Positives = 33/43 (76%) Frame = -3
FS+L SLF L SLFS L S FS++ SLF +LCSLFS+L SLF Sbjct: 75 FSVLCSLFSXLCSLFSXLXSXFSVLXSLFSVLCSLFSVLCSLF 117 ------------------------------------------------------------- gnl|ti|820219782 name:POAA-aaa19g20.g1 (824 letters) Score E Sequences producing significant alignments: (bits) Value gb|AAX30301.1| unknown [Schistosoma japonicum] 87 7e-016 ref|XP_453849.1| unnamed protein product [Kluyveromyces lac... 86 2e-015 gb|AAX27748.1| unknown [Schistosoma japonicum] 69 2e-010 emb|CAB51041.1| putative transcription factor [Periplaneta ... 65 2e-009 dbj|BAD26579.1| cytochrome P450 like_TBP [Citrullus lanatus] 64 8e-009 pir||T02955 probable cytochrome P450 monooxygenase - maize ... 53 1e-005 dbj|BAA10929.1| cytochrome P450 like_TBP [Nicotiana tabacum] 52 2e-005 dbj|BAB33421.1| putative senescence-associated protein [Pis... 49 3e-004 dbj|BAD18905.1| rRNA intron-encoded endonuclease [Thermopro... 45 0.002 dbj|BAD18906.1| rRNA intron-encoded endonuclease [Thermopro... 43 0.011 >gb|AAX30301.1| unknown [Schistosoma japonicum] Length = 55 Score = 87.0 bits (214), Expect = 7e-016 Identities = 40/44 (90%), Positives = 41/44 (93%) Frame = +1
LI DAHEW+NEIPTVPTYYLAKPQPRERAW N RGKKTLLSLTL Sbjct: 5 LISDAHEWMNEIPTVPTYYLAKPQPRERAWRNQRGKKTLLSLTL 48 ---------------------------------------------------------- gnl|ti|818421207 name:POAA-aaa19o06.b1 mate_pair:820219814 (290 letters) Score E
Sequences producing significant alignments: (bits) Value ref|XP_647783.1| hypothetical protein DDB0218127 [Dictyoste... 58 1e-007 ref|XP_643721.1| hypothetical protein DDB0217597 [Dictyoste... 44 0.001 gb|AAO50959.1| similar to Dictyostelium discoideum (Slime m... 42 0.009 ref|XP_642821.1| hypothetical protein DDB0191335 [Dictyoste... 42 0.009 ref|XP_656778.1| aminoalcoholphosphotransferase, putative [... 41 0.015 ref|XP_651514.1| CDP-alcohol phosphatidyltransferase, putat... 39 0.057 emb|CAA21944.1| putative alcohol phosphatidyl transferase [... 38 0.097 ref|XP_653595.1| CDP-alcohol phosphatidyltransferase, putat... 38 0.097 ref|XP_888884.1| hypothetical protein CaJ7.0310 [Candida al... 38 0.097 gb|AAW44309.1| diacylglycerol cholinephosphotransferase, pu... 38 0.097 >ref|XP_647783.1| hypothetical protein DDB0218127 [Dictyostelium discoideum] gb|EAL68075.1| hypothetical protein DDB0218127 [Dictyostelium discoideum] Length = 409
Identities = 25/34 (73%), Positives = 27/34 (79%) Frame = -1
I G PFY AHWEEYH GIL+MG+FNGPTEA L Sbjct: 151 IVGMWPFYLAHWEEYHAGILVMGEFNGPTEAQVL 184 ------------------------------------------------------- gnl|ti|820219815 name:POAA-aaa19o08.g1 mate_pair:818421208 (913 letters) Score E
Sequences producing significant alignments: (bits) Value ref|XP_635459.1| hypothetical protein DDB0219636 [Dictyoste... 119 1e-025 ref|NP_055885.2| KIAA0853 [Homo sapiens] >gi|30908950|gb|AA... 118 2e-025 emb|CAI16506.1| KIAA0853 [Homo sapiens] 118 2e-025 emb|CAI16505.1| KIAA0853 [Homo sapiens] >gi|55859588|emb|CA... 118 2e-025 emb|CAB66679.2| hypothetical protein [Homo sapiens] 118 2e-025 emb|CAD38544.1| hypothetical protein [Homo sapiens] 118 2e-025 ref|XP_542572.2| PREDICTED: similar to Protein KIAA0853 [Ca... 113 8e-024 ref|XP_612879.2| PREDICTED: similar to Protein KIAA0853 iso... 111 3e-023 emb|CAE59383.1| Hypothetical protein CBG02739 [Caenorhabdit... 111 4e-023 ref|NP_080359.2| RIKEN cDNA 3110050K21 [Mus musculus] >gi|6... 110 5e-023 >ref|XP_635459.1| hypothetical protein DDB0219636 [Dictyostelium discoideum] gb|EAL61962.1| hypothetical protein DDB0219636 [Dictyostelium discoideum] Length = 2039
Identities = 68/128 (53%), Positives = 84/128 (65%) Frame = +1
R RE ER +E ERE ER RE+E E ER RERERE ER +ER+R+ E RERE E Sbjct: 1357 REREKEREKEKEREKEREREREKEREKEKEKEREREREREREREKERDREREKERERERE 1416
R R R+ E R ++ E +ERE ER RERE ER R ER RERE EK K R+ E+RE ER Sbjct: 1417 REREREREREREKEKEKEKERERERERERERERER-EREREREREKEKERDREQREKERE 1475
+E+++ +
Sbjct: 1476 REQREKER 1483 --------------------------------------------------------------------------- gnl|ti|820220441 name:POAA-aaa20b11.g1 (756 letters) Score E Sequences producing significant alignments: (bits) Value ref|XP_646988.1| hypothetical protein DDB0216635 [Dictyoste... 79 2e-013 ref|XP_635642.1| hypothetical protein DDB0188946 [Dictyoste... 76 1e-012 ref|XP_644722.1| hypothetical protein DDB0203034 [Dictyoste... 73 9e-012 ref|XP_637259.1| hypothetical protein DDB0187441 [Dictyoste... 72 2e-011 ref|XP_645240.1| hypothetical protein DDB0168754 [Dictyoste... 71 4e-011 ref|XP_638074.1| hypothetical protein DDB0218720 [Dictyoste... 71 4e-011 ref|XP_638026.1| hypothetical protein DDB0186687 [Dictyoste... 70 1e-010 ref|XP_641406.1| hypothetical protein DDB0205868 [Dictyoste... 69 2e-010 ref|YP_142990.1| unknown [Acanthamoeba polyphaga mimivirus]... 69 2e-010 ref|YP_142414.1| unknown [Acanthamoeba polyphaga mimivirus]... 67 6e-010 >ref|XP_646988.1| hypothetical protein DDB0216635 [Dictyostelium discoideum] gb|EAL73134.1| hypothetical protein DDB0216635 [Dictyostelium discoideum] Length = 729
Identities = 73/209 (34%), Positives = 107/209 (51%), Gaps = 21/209 (10%) Frame = +1
+ F + FNQP+ P L+ L+FG F+ + LP +LT L FG+ FNQP+ K L Sbjct: 501 LSFDYYFNQPIEKDVLPINLTSLSFGASFNQSIEKDVLPCNLTSLSFGYSFNQPVEKDVL 560
P NL L+FG +N PI D P S+ +L + P++K LP L L+F S+ N Sbjct: 561 PYNLINLKFGSKFNQPIENDVLPYSLKSLSFGCDFNQPIEKGVLPYDLINLSFGSKFNQF 620
LP +LTSL F N I+ + LP L I+ + FP I SLP LK L Sbjct: 621 IEIDILPKTLTSLYFGSMFNQKIEINILPNNITSLSFSNINYNLHFP--IGSLPSSLKIL 678
+ + + +L L N + T+ +T+++ Sbjct: 679 TINSMQFDQDLSLSFN-DYFTISFETFYI 706 Score = 67.4 bits (163), Expect = 5e-010 Identities = 77/241 (31%), Positives = 110/241 (45%), Gaps = 44/241 (18%) Frame = +1 Query: 67 VEFGHSFNQPVSY--WPKKLSHLTFGDGFDSPLSN--LPDSLTHLRFGFDFNQPL----- 219 + FG+ FN+ V PK L L+FG F+ L+ LP +L +L FG+ FN+P+ Sbjct: 435 ISFGNKFNEIVEMDSLPKNLKTLSFGLNFNQILNENELPLNLKNLSFGYHFNKPIKINVI 494
LP NL L FG ++N I D P ++ +L S P Sbjct: 495 PITLTNLSFDYYFNQPIEKDVLPINLTSLSFGASFNQSIEKDVLPCNLTSLSFGYSFNQP 554
V+K LP +L L F S+ N LP SL SL F D N I+ LP L++L Sbjct: 555 VEKDVLPYNLINLKFGSKFNQPIENDVLPYSLKSLSFGCDFNQPIEKGVLPYDLINLSFG 614
+ I LP L L ++E+++LP N+T L+ + Y PIG LP+S Sbjct: 615 SKFNQFIEIDILPKTLTSLYFGSMFNQKIEINILPNNITSLSFSNINYNLHFPIGSLPSS 674
+ Sbjct: 675 L 675 -------------------------------------------------------------------------- gnl|ti|818419312 name:POAA-aaa20b15.b1 mate_pair:820220443 (602 letters) Score E Sequences producing significant alignments: (bits) Value gb|AAN35503.1| hypothetical protein PF10_0306 [Plasmodium f... 72 9e-012 ref|NP_703313.1| hypothetical protein [Plasmodium falciparu... 54 4e-006 gb|EAA22600.1| hypothetical protein [Plasmodium yoelii yoelii] 54 4e-006 ref|XP_672587.1| hypothetical protein PB108610.00.0 [Plasmo... 52 1e-005 ref|XP_646781.1| hypothetical protein DDB0191040 [Dictyoste... 51 2e-005 gb|AAX27955.1| unknown [Schistosoma japonicum] 50 6e-005 ref|XP_629530.1| TFIID subunit [Dictyostelium discoideum] >... 50 6e-005 ref|NP_700961.1| succinyl-CoA synthetase alpha subunit, put... 48 2e-004 pir||T31613 hypothetical protein Y50E8A.i - Caenorhabditis ... 48 2e-004 gb|EAN76768.1| hypothetical protein, unlikely [Trypanosoma ... 44 0.004 >gb|AAN35503.1| hypothetical protein PF10_0306 [Plasmodium falciparum 3D7] ref|NP_700779.1| hypothetical protein PF10_0306 [Plasmodium falciparum 3D7] Length = 422
Identities = 35/54 (64%), Positives = 36/54 (66%), Gaps = 10/54 (18%) Frame = +1
N+ GK EKWK GKMEKWKNGK NGKMEKW KKWKKWK GKME Sbjct: 368 NIKIKTKGKKEKWKKGKMEKWKNGKMKKWKNGKMEKWKNGKMKKWKKWKKGKME 421
Identities = 37/53 (69%), Positives = 39/53 (73%), Gaps = 2/53 (3%) Frame = +2
KI TK K EKWK GKMEKWKNG KM+KWKNGK KNGKM+KWK K GK Sbjct: 370 KIKTKGKKEKWKKGKMEKWKNG---KMKKWKNGKMEKWKNGKMKKWKKWKKGK 419 Score = 67.4 bits (163), Expect = 3e-010 Identities = 33/46 (71%), Positives = 36/46 (78%), Gaps = 2/46 (4%) Frame = +3 Query: 186 KWKNGKMEKWKNGKMEKWKKWKNGKMEKME--KMEKWKNGKWKNGE 317 KWK GKMEKWKNGKM KKWKNGKMEK + KM+KWK KWK G+ Sbjct: 379 KWKKGKMEKWKNGKM---KKWKNGKMEKWKNGKMKKWK--KWKKGK 419 Score = 67.0 bits (162), Expect = 4e-010 Identities = 30/51 (58%), Positives = 37/51 (72%), Gaps = 3/51 (5%) Frame = +3 Query: 126 RVPGAQNKLEEFTKKYEQNGK---WKNGKMEKWKNGKMEKWKKWKNGKMEK 269 + G + K ++ + +NGK WKNGKMEKWKNGKM+KWKKWK GKMEK Sbjct: 372 KTKGKKEKWKKGKMEKWKNGKMKKWKNGKMEKWKNGKMKKWKKWKKGKMEK 422 Score = 59.7 bits (143), Expect = 6e-008 Identities = 26/36 (72%), Positives = 29/36 (80%), Gaps = 3/36 (8%) Frame = +2 Query: 179 KWK---MEKWKNGKMEKWKNGKMEKMEKWKNGKNGK 277 KWK M+KWKNGKMEKWKNGKM+K +KWK GK K Sbjct: 387 KWKNGKMKKWKNGKMEKWKNGKMKKWKKWKKGKMEK 422 Score = 58.9 bits (141), Expect = 1e-007 Identities = 28/41 (68%), Positives = 30/41 (73%), Gaps = 5/41 (12%) Frame = +2 Query: 179 KWKMEKWKNGKMEKWKNGKMEK-----MEKWKNGKNGKNGK 286 K KMEKWKNGKM+KWKNGKMEK M+KWK K GK K Sbjct: 382 KGKMEKWKNGKMKKWKNGKMEKWKNGKMKKWKKWKKGKMEK 422 Score = 44.3 bits (103), Expect = 0.003 Identities = 26/56 (46%), Positives = 30/56 (53%) Frame = +3 Query: 198 GKMEKWKNGKMEKWKKWKNGKMEKMEKMEKWKNGKWKNGENKMAKEHTIISE*KKW 365 GK EKWK GKMEKWK NGKM+ KWKNG+ + K + KKW Sbjct: 375 GKKEKWKKGKMEKWK---NGKMK-----------KWKNGKMEKWKNGKM----KKW 412 Score = 41.2 bits (95), Expect = 0.023 Identities = 20/32 (62%), Positives = 23/32 (71%), Gaps = 2/32 (6%) Frame = +1 Query: 247 GKMEKWKKWK--KWKNGKMENGKMGKIKWQKN 336 GK EKWKK K KWKNGKM+ K GK++ KN Sbjct: 375 GKKEKWKKGKMEKWKNGKMKKWKNGKMEKWKN 406 --------------------------------------------------- gnl|ti|818419316 name:POAA-aaa20d03.b1 mate_pair:820220448 (243 letters) Score E
Sequences producing significant alignments: (bits) Value ref|XP_640440.1| hypothetical protein DDB0218357 [Dictyoste... 58 9e-008 ref|XP_651687.1| Rhomboid family protein [Entamoeba histoly... 51 1e-005 ref|XP_395087.2| PREDICTED: similar to CG33304-PA, partial ... 50 2e-005 emb|CAB55154.1| Hypothetical protein Y116A8C.14 [Caenorhabd... 49 5e-005 gb|AAT84607.1| rhomboid protease 3 [Toxoplasma gondii] 49 5e-005 gb|AAT39987.1| rhomboid-like protease ROM3 [Toxoplasma gondii] 49 5e-005 ref|NP_692844.1| hypothetical protein OB1923 [Oceanobacillu... 48 1e-004 emb|CAB55122.2| Hypothetical protein Y116A8C.16 [Caenorhabd... 47 2e-004 ref|NP_613339.1| Predicted membrane serine protease of the ... 47 2e-004 ref|ZP_00385184.1| COG0705: Uncharacterized membrane protei... 47 2e-004 >ref|XP_640440.1| hypothetical protein DDB0218357 [Dictyostelium discoideum] gb|EAL66469.1| hypothetical protein DDB0218357 [Dictyostelium discoideum] Length = 1399
Identities = 27/62 (43%), Positives = 40/62 (64%) Frame = -3
R TP+F+ + I H L+N+V QL +G+Q ER RI+ +Y + +AGNL SAI LP Sbjct: 295 RFFTPIFLHVGIFHYLMNMVTQLRVGMQLERAYGGHRIVPIYLLCGVAGNLCSAIMLPNS 354
++ Sbjct: 355 VQ 356 ----------------------------------------- gnl|ti|818419328 name:POAA-aaa20f05.b1 mate_pair:820220460 (524 letters) Score E Sequences producing significant alignments: (bits) Value ref|XP_788695.1| PREDICTED: similar to predicted CDS, rever... 103 3e-021 Yüklə 3,49 Mb. Dostları ilə paylaş:
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