Webmaster's Note: As Gerard says below, his Fourth Report came in two parts
Yüklə 3,49 Mb.
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Sequences producing significant alignments: (bits) Value gb|AAK69777.1| ABC transporter mdrA2 [Dictyostelium discoid... 149 1e-034 ref|XP_643502.1| ABC transporter G family protein [Dictyost... 149 1e-034 ref|XP_643503.1| ABC transporter G family protein [Dictyost... 116 1e-024 gb|AAL91501.1| ABC transporter AbcG16 [Dictyostelium discoi... 102 2e-020 ref|XP_636281.1| ABC transporter G family protein [Dictyost... 102 2e-020 gb|AAL91490.1| ABC transporter AbcG5 [Dictyostelium discoid... 99 3e-019 ref|XP_640709.1| ABC transporter G family protein [Dictyost... 99 3e-019 gb|AAL91491.1| ABC transporter AbcG6 [Dictyostelium discoid... 98 4e-019 ref|XP_640710.1| ABC transporter G family protein [Dictyost... 98 4e-019 ref|XP_637199.1| ABC transporter G family protein [Dictyost... 95 3e-018 >gb|AAK69777.1| ABC transporter mdrA2 [Dictyostelium discoideum] Length = 1476
Identities = 64/146 (43%), Positives = 90/146 (61%) Frame = +2
D+ S++ R V +F + A+ I PA ++ G++ IP WWIW+Y++SP HY Sbjct: 572 DVMSLSIIRSVCSFTKTKYAASAISPAVVSPFILMCGYMKHSNEIPGWWIWLYWISPIHY 631
EG ++NE G YHC+P+E +PP + P F+ YP GF+ N VCP+T GEQ L S+ H Sbjct: 632 GFEGLLLNEHSGLDYHCSPDELMPPSFLPTFNTSYPVGFEGNQVCPITKGEQILDSIGFH 691
TEF +RW LAI+ F L F L+T V Sbjct: 692 TEFYYRWVDLAIISAFTLLFWLITLV 717 Score = 64.7 bits (156), Expect = 4e-009 Identities = 43/160 (26%), Positives = 69/160 (43%) Frame = +2 Query: 89 YHRVDLFSIAFCRYVSTFVAMEQVAAGIVPAFFGTMVMFAGFVIPPPSIPNWWIWVYYLS 268 Y L SIAF +T + +E++ + +FAGF+IPPPS+P W W +YL Sbjct: 1330 YLNFGLTSIAF----ATSLPVEEMGFLLNGVLLSVTSLFAGFMIPPPSMPAAWKWAFYLD 1385
Y L+ ++ E + C N+ P +P P CP+THG Q L Sbjct: 1386 FISYPLKAFLITEFKDMEFVCTDNKGAIP-------IPIPSQNTTKFFCPITHGTQVLDR 1438
+ F + W + I+ F ++ ++ I + K Sbjct: 1439 IDYKISFQY-W-DILIMASFTFALLVGGYLSLKFIRYQNK 1476 ---------------------- gnl|ti|818410853 name:POAA-aab60f09.g1 mate_pair:818410519 (925 letters)
Score E
Sequences producing significant alignments: (bits) Value ref|XP_543162.2| PREDICTED: similar to Potential phospholip... 69 2e-010 ref|XP_616800.2| PREDICTED: similar to Potential phospholip... 69 3e-010 emb|CAH72858.1| ATPase, Class I, type 8B, member 2 [Homo sa... 67 9e-010 ref|XP_524888.1| PREDICTED: hypothetical protein XP_524888 ... 67 9e-010 gb|AAH07837.2| ATP8B2 protein [Homo sapiens] 67 9e-010 sp|P98198|AT8B2_HUMAN Probable phospholipid-transporting AT... 67 9e-010 dbj|BAA86451.1| KIAA1137 protein [Homo sapiens] 67 9e-010 ref|XP_624455.1| PREDICTED: similar to CG17034-PD, isoform ... 67 1e-009 ref|XP_420729.1| PREDICTED: similar to chromaffin granule A... 66 2e-009 ref|XP_223390.3| PREDICTED: similar to ATPase, aminophospho... 65 3e-009 >ref|XP_543162.2| PREDICTED: similar to Potential phospholipid-transporting ATPase IB (ATPase class I type 8A member 2) (ML-1) [Canis familiaris] Length = 1175
Identities = 32/58 (55%), Positives = 46/58 (79%), Gaps = 2/58 (3%) Frame = +2
+F+FE+LN+LEF+SNRKRMSV+V+ P G + LYCKGAD+ + +R++ DS +TL H Sbjct: 539 NFTFEILNILEFSSNRKRMSVIVRTPTGNLRLYCKGADTVIYERLSEDSLFMKETLTH 596
gnl|ti|818410861 name:POAA-aab60g06.g1 mate_pair:818410528 (686 letters) Score E
Sequences producing significant alignments: (bits) Value gb|AAM27198.1| physarolisin [Physarum polycephalum] 117 3e-025 ref|XP_635806.1| hypothetical protein DDB0188843 [Dictyoste... 91 3e-017 gb|AAD37352.1| pepstatin-insensitive carboxyl proteinase 2 ... 79 1e-013 ref|XP_645388.1| hypothetical protein DDB0168626 [Dictyoste... 64 6e-009 gb|AAH68900.1| MGC83094 protein [Xenopus laevis] 62 2e-008 gb|AAV74253.1| CLN2 protein [Saimiri boliviensis] 61 3e-008 gb|AAH81775.1| Tripeptidyl peptidase I [Rattus norvegicus] 61 4e-008 ref|NP_112647.1| tripeptidyl peptidase I [Rattus norvegicus... 61 4e-008 ref|XP_639327.1| hypothetical protein DDB0185336 [Dictyoste... 60 6e-008 ref|YP_293890.1| putative membrane protein [Emiliania huxle... 54 6e-006 >gb|AAM27198.1| physarolisin [Physarum polycephalum] Length = 575
Identities = 55/81 (67%), Positives = 64/81 (79%) Frame = +3
VCTIP+ALIT+GGGFS+Y PSYQ+A V+ Y KSGV LPP T+F+ +NRGFPDVSALGH Sbjct: 408 VCTIPQALITTGGGFSDYSLQPSYQNAAVAAYFKSGVPLPPQTDFNASNRGFPDVSALGH 467
NYLI+ G FEQVDG P Sbjct: 468 NYLIALSGDFEQVDGTSASTP 488
gnl|ti|818414645 name:POAA-aab61a07.g1 mate_pair:818414307 (516 letters) Score E
Sequences producing significant alignments: (bits) Value gb|AAB59124.1| 10.2 kd ORF [Plasmid ColE1] >gi|9507257|ref|... 86 6e-016 ref|ZP_00374729.1| conserved hypothetical protein [Wolbachi... 71 1e-011 pir||A53577 ascites sialoglycoprotein 1 - rat (fragments) 46 6e-004 gb|AAA85523.1| Heterodimeric complex composed of a mucin su... 46 6e-004 ref|ZP_00573701.1| putative tellurium resistance protein Te... 39 0.059 ref|NP_683431.1| structural constituent of cell wall [Arabi... 38 0.17 emb|CAA63225.1| BNI1 [Saccharomyces cerevisiae] >gi|2253185... 37 0.29 emb|CAA96179.1| BNI1 [Saccharomyces cerevisiae] >gi|1705492... 37 0.29 dbj|BAA22512.1| 'Ppf3p' [Saccharomyces cerevisiae] 37 0.29 ref|NP_913253.1| OSJNBa0016I09.19 [Oryza sativa (japonica c... 34 2.5 >gb|AAB59124.1| 10.2 kd ORF [Plasmid ColE1] ref|NP_040359.1| hypothetical protein pColE1_04 [Plasmid ColE1] Length = 96 Score = 85.9 bits (211), Expect = 6e-016 Identities = 42/47 (89%), Positives = 44/47 (93%) Frame = +3
+RSFFSARNLLLANKKTTAT+GGLFAGSRAT SFSEGNWLQ S DTK Sbjct: 1 MRSFFSARNLLLANKKTTATNGGLFAGSRATNSFSEGNWLQQSADTK 47 ---------------- gnl|ti|818414656 name:POAA-aab61b08.g1 mate_pair:818414320 (887 letters)
Score E
Sequences producing significant alignments: (bits) Value sp|P03851|YPB3_ECOLI Hypothetical 9.4 kDa protein 158 2e-037 gb|AAB59124.1| 10.2 kd ORF [Plasmid ColE1] >gi|9507257|ref|... 122 2e-026 ref|NP_995570.1| hypothetical protein pPCP04 [Yersinia pest... 94 8e-018 pir||JQ1541 hypothetical 16.9K protein - Salmonella typhimu... 89 2e-016 gb|AAR02632.1| conserved hypothetical protein [Salmonella t... 88 3e-016 ref|NP_758764.1| hypothetical protein pEA28_01 [Erwinia amy... 88 3e-016 gb|AAB59125.1| 13.8 kd ORF [Plasmid ColE1] >gi|9507258|ref|... 88 3e-016 ref|YP_355421.1| hypothetical protein pCollet_06 [Escherich... 84 8e-015 ref|ZP_00374729.1| conserved hypothetical protein [Wolbachi... 82 2e-014 sp|P03845|YPA1_ECOLI Hypothetical protein 1 50 1e-004 >sp|P03851|YPB3_ECOLI Hypothetical 9.4 kDa protein Length = 84
Identities = 74/81 (91%), Positives = 74/81 (91%) Frame = -1
PP P CALSGNYRLESNPVRHDLSPL AATG RISRARYVGGATEFLKWWPNYGYTRR Sbjct: 4 PPVQPDRCALSGNYRLESNPVRHDLSPLAAATGNRISRARYVGGATEFLKWWPNYGYTRR 63
TVFGIC LLKPVTFGKRVGSS Sbjct: 64 TVFGICALLKPVTFGKRVGSS 84 --------------- gnl|ti|818414661 name:POAA-aab61c02.g1 mate_pair:818414324 (862 letters)
Score E
Sequences producing significant alignments: (bits) Value emb|CAA90072.1| luciferase [Luciola lateralis] >gi|28397139... 82 2e-014 gb|AAO39673.2| luciferase type MJ1 [Luciola lateralis] >gi|... 82 2e-014 emb|CAA47358.1| luciferase [Luciola lateralis] >gi|266484|s... 82 2e-014 emb|CAA93444.1| luciferase [Luciola lateralis] >gi|1323555|... 82 2e-014 gb|AAB26932.1| luciferase [Luciola mingrelica] >gi|61213879... 82 2e-014 gb|AAC37253.1| luciferase >gi|1584301|prf||2122369B luciferase 81 5e-014 sp|P13129|LUCI_LUCCR Luciferin 4-monooxygenase (Luciferase)... 79 2e-013 gb|AAM00429.1| luciferase [Hotaria unmunsana] 79 2e-013 gb|AAN40976.1| luciferase [Hotaria tsushimana] 79 2e-013 gb|AAN40978.1| luciferase [Hotaria papariensis] >gi|2402117... 79 2e-013 >emb|CAA90072.1| luciferase [Luciola lateralis] gb|AAO39674.1| luciferase type MJ2 [Luciola lateralis] gb|AAA91472.1| luciferase [Luciola lateralis] Length = 548
Identities = 43/87 (49%), Positives = 49/87 (56%) Frame = -1
Y DNPEATRE IDEEGW HTGD+ YYDE+ +FFIVDR+K LIK Sbjct: 403 YVDNPEATREIIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIK----------------- 445
Y G QV +ELE +LL H Sbjct: 446 ---------YKGYQVPPAELESVLLQH 463 ---------------------- gnl|ti|818414329 name:POAA-aab61c07.b1 mate_pair:818414666 (689 letters)
Score E
Sequences producing significant alignments: (bits) Value gb|AAN84556.1| p47 tumor suppressor-like protein [Acanthamo... 75 3e-012 dbj|BAD89149.1| inhibitor of growth-1 homologue, DNG1 [Dict... 69 1e-010 ref|XP_638615.1| hypothetical protein DDB0220706 [Dictyoste... 69 1e-010 emb|CAC48260.2| hypothetical protein [Homo sapiens] 65 2e-009 ref|NP_566742.1| DNA binding / protein binding / zinc ion b... 65 3e-009 gb|AAO42002.1| putative PHD-finger protein [Arabidopsis tha... 65 3e-009 gb|AAW52341.1| p21ING1c variant 2 [Xenopus laevis] >gi|5754... 65 3e-009 gb|AAW52339.1| p33ING1b variant 5 [Xenopus laevis] 65 3e-009 gb|AAW52338.1| p33ING1b variant 4 [Xenopus laevis] >gi|5754... 65 3e-009 gb|AAH76023.1| Zgc:92346 [Danio rerio] >gi|50539956|ref|NP_... 64 4e-009 >gb|AAN84556.1| p47 tumor suppressor-like protein [Acanthamoeba culbertsoni] Length = 42
Identities = 28/35 (80%), Positives = 32/35 (91%) Frame = -3
F C++EWFHFECVGL+ PPKGKWYC ECTAL+KKQ Sbjct: 3 FDCRVEWFHFECVGLSAPPKGKWYCNECTALRKKQ 37 --------------------- gnl|ti|818414681 name:POAA-aab61d11.g1 mate_pair:818414345 (891 letters)
Score E
Sequences producing significant alignments: (bits) Value gb|AAX30301.1| unknown [Schistosoma japonicum] 87 8e-016 emb|CAH00945.1| unnamed protein product [Kluyveromyces lact... 86 2e-015 gb|AAX27748.1| unknown [Schistosoma japonicum] 69 3e-010 emb|CAB51041.1| putative transcription factor [Periplaneta ... 65 2e-009 dbj|BAD26579.1| cytochrome P450 like_TBP [Citrullus lanatus] 62 2e-008 pir||T02955 probable cytochrome P450 monooxygenase - maize ... 52 3e-005 dbj|BAA10929.1| cytochrome P450 like_TBP [Nicotiana tabacum] 50 8e-005 dbj|BAD18905.1| rRNA intron-encoded endonuclease [Thermopro... 49 3e-004 dbj|BAD18906.1| rRNA intron-encoded endonuclease [Thermopro... 46 0.002 dbj|BAB33421.1| putative senescence-associated protein [Pis... 46 0.002 >gb|AAX30301.1| unknown [Schistosoma japonicum] Length = 55
Identities = 40/44 (90%), Positives = 41/44 (93%) Frame = +1
LI DAHEW+NEIPTVPTYYLAKPQPRERAW N RGKKTLLSLTL Sbjct: 5 LISDAHEWMNEIPTVPTYYLAKPQPRERAWRNQRGKKTLLSLTL 48 ----------------- gnl|ti|818414701 name:POAA-aab61f09.g1 mate_pair:818414366 (902 letters)
Score E
Sequences producing significant alignments: (bits) Value ref|YP_001431.1| thioredoxin reductase [Leptospira interrog... 75 4e-012 ref|NP_712675.1| Thioredoxin reductase 1 [Leptospira interr... 75 4e-012 ref|XP_759910.1| hypothetical protein UM03763.1 [Ustilago m... 71 4e-011 gb|AAW43963.1| thioredoxin-disulfide reductase, putative [C... 69 2e-010 gb|AAS56075.1| YDR353W [Saccharomyces cerevisiae] >gi|17177... 69 2e-010 gb|AAS56208.1| YHR106W [Saccharomyces cerevisiae] >gi|52912... 69 3e-010 ref|XP_661185.1| thioredoxin reductase [Aspergillus nidulan... 68 4e-010 gb|AAP72145.1| thioredoxin reductase Trr1 [Pneumocystis jir... 68 4e-010 emb|CAG60242.1| unnamed protein product [Candida glabrata C... 67 6e-010 dbj|BAA08090.1| NADPH thioredoxin reductase [Neurospora cra... 67 6e-010 >ref|YP_001431.1| thioredoxin reductase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gb|AAS70068.1| thioredoxin reductase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 316 Score = 74.7 bits (182), Expect = 4e-012 Identities = 37/64 (57%), Positives = 49/64 (76%), Gaps = 2/64 (3%) Frame = -1
RANL P+++EG MAGG+AAGGQLTTTT++ENFPGFPEG+ ++ L+R +I+ II Sbjct: 23 RANLNPVMYEGFMAGGIAAGGQLTTTTEVENFPGFPEGIDGTKLTQLFREQSIKYGTKII 82
T I
Sbjct: 83 TQTI 86 ---------------------- gnl|ti|818414368 name:POAA-aab61f11.b1 mate_pair:818414703 (899 letters)
Score E
Sequences producing significant alignments: (bits) Value emb|CAG08487.1| unnamed protein product [Tetraodon nigrovir... 134 4e-030 ref|XP_698507.1| PREDICTED: similar to 1-alpha dynein heavy... 129 1e-028 ref|XP_698418.1| PREDICTED: similar to 1-alpha dynein heavy... 129 1e-028 ref|XP_415109.1| PREDICTED: similar to 1-alpha dynein heavy... 129 2e-028 ref|XP_394775.2| PREDICTED: similar to ENSANGP00000022143 [... 127 4e-028 ref|XP_355638.3| PREDICTED: dynein, axonemal, heavy chain 1... 126 9e-028 ref|XP_882350.1| PREDICTED: similar to CG1842-PA isoform 2 ... 125 2e-027 ref|XP_604015.2| PREDICTED: similar to CG1842-PA isoform 1 ... 125 2e-027 emb|CAF96735.1| unnamed protein product [Tetraodon nigrovir... 124 3e-027 emb|CAB56598.1| 1-alpha dynein heavy chain [Chlamydomonas r... 122 1e-026 >emb|CAG08487.1| unnamed protein product [Tetraodon nigroviridis] Length = 2944
Identities = 66/91 (72%), Positives = 77/91 (84%) Frame = -1
RALKSVLVMAG LKR +P++SED+V+MRALRDMNLPKFVF+DVPLF GL++DLFP L P Sbjct: 632 RALKSVLVMAGELKRGSPELSEDVVLMRALRDMNLPKFVFEDVPLFLGLISDLFPGLDCP 691
RV Y F DAVE L ++DYIILP QVDKV+ Sbjct: 692 RVCYPDFNDAVEQVLQERDYIILPNQVDKVV 722 Score = 89.0 bits (219), Expect = 2e-016 Identities = 45/65 (69%), Positives = 53/65 (81%) Frame = -3 Query: 660 QSLFRPVVMVVPDLELISEIMLFSEGFDSAKHLARKMTVLYKLSQEQLSKQHHYDFGFRF 481 ++LFRPVV++VPDL+ I EIMLF EGF AK LA+KMTVLYKL++EQLSKQ HYDFG R Sbjct: 574 KALFRPVVVIVPDLQQICEIMLFCEGFLMAKVLAKKMTVLYKLAREQLSKQSHYDFGLRA 633
K L
Sbjct: 634 LKSVL 638 Score = 45.4 bits (106), Expect = 0.003 Identities = 19/29 (65%), Positives = 25/29 (86%) Frame = -1 Query: 785 LDMKCGIFVTMNPGYAGRSELPDNLKV*F 699 LD + GIF+TMNPGYAGR+ELP+++K F Sbjct: 549 LDGRMGIFITMNPGYAGRTELPESVKALF 577 --------------------------- gnl|ti|818414703 name:POAA-aab61f11.g1 mate_pair:818414368 (888 letters)
Score E
Sequences producing significant alignments: (bits) Value emb|CAB56598.1| 1-alpha dynein heavy chain [Chlamydomonas r... 63 2e-008 emb|CAG08487.1| unnamed protein product [Tetraodon nigrovir... 49 3e-004 ref|XP_790145.1| PREDICTED: similar to CG1842-PA, partial [... 48 5e-004 ref|XP_882350.1| PREDICTED: similar to CG1842-PA isoform 2 ... 47 7e-004 ref|XP_604015.2| PREDICTED: similar to CG1842-PA isoform 1 ... 47 7e-004 ref|XP_415109.1| PREDICTED: similar to 1-alpha dynein heavy... 47 7e-004 ref|NP_997321.1| dynein, axonemal, heavy polypeptide 10 iso... 47 0.001 ref|XP_543369.2| PREDICTED: similar to CG1842-PA [Canis fam... 47 0.001 dbj|BAC23113.2| KIAA2017 protein [Homo sapiens] 47 0.001 ref|XP_355638.3| PREDICTED: dynein, axonemal, heavy chain 1... 47 0.001 >emb|CAB56598.1| 1-alpha dynein heavy chain [Chlamydomonas reinhardtii] sp|Q9SMH3|DYH1A_CHLRE Dynein 1-alpha heavy chain, flagellar inner arm I1 complex (1-alpha DHC) (Dynein 1, subspecies f) Length = 4625
Identities = 28/44 (63%), Positives = 33/44 (75%) Frame = +3
G VE WMTNVEAEMR+TL I KE +F+Y KTPR KWI + G+ Sbjct: 1762 GAVELWMTNVEAEMRKTLYQITKEGIFFYAKTPRTKWISENLGM 1805 ------------------- gnl|ti|818414708 name:POAA-aab61g04.g1 mate_pair:818414373 (790 letters)
Score E
Sequences producing significant alignments: (bits) Value ref|XP_635721.1| pantothenate kinase [Dictyostelium discoid... 77 7e-013 ref|NP_194945.3| ATP binding / pantothenate kinase [Arabido... 70 6e-011 ref|NP_001031768.1| ATP binding / pantothenate kinase [Arab... 70 6e-011 emb|CAB79936.1| putative protein [Arabidopsis thaliana] >gi... 70 6e-011 gb|AAM20690.1| putative protein [Arabidopsis thaliana] >gi|... 70 6e-011 dbj|BAD33319.1| putative pantothenate kinase 4 [Oryza sativ... 70 8e-011 ref|NP_956809.1| hypothetical protein LOC393487 [Danio reri... 70 1e-010 dbj|BAD95798.1| partially similar to pantothenate kinase fa... 68 4e-010 ref|XP_719255.1| hypothetical protein CaO19_13022 [Candida ... 64 8e-009 gb|AAS54101.1| AFR729Cp [Ashbya gossypii ATCC 10895] >gi|45... 63 1e-008 >ref|XP_635721.1| pantothenate kinase [Dictyostelium discoideum] gb|EAL62216.1| pantothenate kinase [Dictyostelium discoideum] Length = 685 Score = 77.0 bits (188), Expect = 7e-013 Identities = 41/100 (41%), Positives = 53/100 (53%) Frame = +2
YL++ R+ L +IYFGGFFIRDHP+TM RIS+A+DFWSK + Sbjct: 500 YLNSQRYGLNKIYFGGFFIRDHPNTMQRISFAIDFWSKGQT------------------- 540
+AMFL+H+GYLGALG+FL Sbjct: 541 ----------------------KAMFLVHDGYLGALGSFL 558 Score = 36.2 bits (82), Expect = 1.3 Identities = 17/23 (73%), Positives = 18/23 (78%) Frame = +1 Query: 250 ISKADICMSLLKMMCNNIGQIAY 318 I K DI SLLKM+ NNIGQIAY Sbjct: 478 IKKEDIAQSLLKMVSNNIGQIAY 500 ---------------------- gnl|ti|818414377 name:POAA-aab61g08.b1 mate_pair:818414712 (905 letters)
Score E
Sequences producing significant alignments: (bits) Value emb|CAF97376.1| unnamed protein product [Tetraodon nigrovir... 72 2e-011 ref|XP_794124.1| PREDICTED: similar to DEAH (Asp-Glu-Ala-Hi... 70 8e-011 ref|XP_784575.1| PREDICTED: similar to DEAH (Asp-Glu-Ala-Hi... 70 8e-011 ref|XP_879768.1| PREDICTED: similar to DEAH (Asp-Glu-Ala-Hi... 70 1e-010 ref|XP_792246.1| PREDICTED: similar to DEAH (Asp-Glu-Ala-Hi... 70 1e-010 ref|XP_549933.1| putative DEAD/H box polypeptide 36 protein... 69 2e-010 ref|NP_909005.1| putative ATP-dependent RNA helicase A [Ory... 69 2e-010 gb|AAM14828.1| putative RNA helicase A [Arabidopsis thaliana] 69 2e-010 gb|AAB01660.1| putative RNA helicase A 69 2e-010 ref|NP_850154.2| HVT1 (HELICASE IN VASCULAR TISSUE AND TAPE... 69 2e-010 >emb|CAF97376.1| unnamed protein product [Tetraodon nigroviridis] Length = 706
Identities = 38/73 (52%), Positives = 50/73 (68%) Frame = -2
+ SLN L A F + + F+IIPLHS + +++Q +F +P PG RKIVI TNIAETSIT Sbjct: 213 ISSLNDLLMAQQMFRSDR-FVIIPLHSLMPTVNQTQVFKKPPPGVRKIVIATNIAETSIT 271
IDD+V GG + Sbjct: 272 IDDVVYVIDGGKI 284 ---------------------- PP39_resultats gnl|ti|818412375 name:POAA-aab62c02.b1 mate_pair:818412032 (905 letters) Score E
Sequences producing significant alignments: (bits) Value ref|XP_637649.1| hypothetical protein DDB0187121 [Dictyoste... 72 3e-011 ref|XP_646834.1| STAT [Dictyostelium discoideum] >gi|343922... 40 0.15 ref|XP_636103.1| hypothetical protein DDB0188566 [Dictyoste... 39 0.19 gb|AAO52566.1| similar to Dictyostelium discoideum (Slime m... 39 0.32 dbj|BAC56911.1| kinesin-related protein DdKin2 [Dictyosteli... 39 0.32 ref|XP_644079.1| hypothetical protein DDB0185204 [Dictyoste... 39 0.32 ref|XP_358202.3| PREDICTED: similar to RIKEN cDNA 2600013N1... 39 0.32 ref|NP_473218.1| hypothetical protein [Plasmodium falciparu... 38 0.42 ref|XP_645901.1| hypothetical protein DDB0190200 [Dictyoste... 34 0.46 ref|XP_643035.1| hypothetical protein DDB0202956 [Dictyoste... 37 0.72 >ref|XP_637649.1| hypothetical protein DDB0187121 [Dictyostelium discoideum] gb|EAL64123.1| hypothetical protein DDB0187121 [Dictyostelium discoideum] Length = 694
Identities = 32/53 (60%), Positives = 46/53 (86%) Frame = -3
+++DYI RNEEQ+ +++ LE+KT ENDFL+KSI+QLT+ F+QLAM+LEAK + Sbjct: 321 SIKDYIQRNEEQINTLRLHLEEKTTENDFLKKSIVQLTAGFNQLAMKLEAKTN 373 Score = 48.9 bits (115), Expect = 2e-004 Identities = 21/35 (60%), Positives = 27/35 (77%), Gaps = 1/35 (2%) Frame = -2 Query: 853 CSHI-VSHKVAGCTFEGTKPALAEHMENCGYESIK 752 C+HI +H+ AGCTFEGTK L +H++ C YESIK Sbjct: 289 CNHIHCNHRSAGCTFEGTKQQLEDHLQGCVYESIK 323 ------------------- nl|ti|818412032 name:POAA-aab62c02.g1 mate_pair:818412375 (924 letters)
Score E
Sequences producing significant alignments: (bits) Value ref|NP_177284.1| ATP binding / ATP-dependent helicase/ heli... 54 1e-005 ref|NP_177293.1| ATP binding / ATP-dependent helicase/ heli... 51 7e-005 dbj|BAC42912.1| putative ATP-dependent RNA helicase [Arabid... 51 7e-005 ref|NP_909393.1| putative RNA helicase [Oryza sativa (japon... 46 0.002 ref|NP_196164.1| ATP binding / ATP-dependent helicase/ heli... 45 0.003 ref|XP_711406.1| putative SPB4-like DEAD box RNA helicase [... 45 0.004 Yüklə 3,49 Mb. Dostları ilə paylaş:
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