Webmaster's Note: As Gerard says below, his Fourth Report came in two parts



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ref|XP_711155.1| putative SPB4-like DEAD box RNA helicase [... 45 0.004

emb|CAG05307.1| unnamed protein product [Tetraodon nigrovir... 45 0.004

emb|CAG05302.1| unnamed protein product [Tetraodon nigrovir... 45 0.004

ref|XP_635318.1| hypothetical protein DDB0183998 [Dictyoste... 44 0.008

>ref|NP_177284.1| ATP binding / ATP-dependent helicase/ helicase/ nucleic acid

binding [Arabidopsis thaliana]

gb|AAG51890.1| putative DEAD/DEAH box helicase; 70712-72602 [Arabidopsis thaliana]

Length = 465


Score = 53.5 bits (127), Expect = 1e-005

Identities = 26/53 (49%), Positives = 35/53 (66%)

Frame = -2
Query: 491 KCILTRLDTNKFIDEGAQIIVGTPGRVEAFMGAMEYQANFKELEILVLDEADR 333

KC D N +EGA +++GTPGR+ M ME+ +F+ LEIL+LDEADR

Sbjct: 120 KCREVEADMNTLEEEGANLLIGTPGRLSDMMKRMEF-LDFRNLEILILDEADR 171

------------

nl|ti|818412414 name:POAA-aab62f10.b1

mate_pair:818412075

(904 letters)

Score E


Sequences producing significant alignments: (bits) Value
emb|CAJ00344.1| chloramphenicol acetyltransferase [Aeromona... 232 1e-059

-----------

gnl|ti|818412075 name:POAA-aab62f10.g1

mate_pair:818412414

(895 letters)

Score E


Sequences producing significant alignments: (bits) Value
gb|AAB59124.1| 10.2 kd ORF [Plasmid ColE1] >gi|9507257|ref|... 141 3e-032

----------

gnl|ti|818412077 name:POAA-aab62f12.g1

mate_pair:818412416

(908 letters)

Score E


Sequences producing significant alignments: (bits) Value
emb|CAE73829.1| Hypothetical protein CBG21394 [Caenorhabdit... 79 2e-013

emb|CAE62908.1| Hypothetical protein CBG07099 [Caenorhabdit... 72 2e-011

emb|CAE63441.1| Hypothetical protein CBG07892 [Caenorhabdit... 67 9e-010

emb|CAE62907.1| Hypothetical protein CBG07098 [Caenorhabdit... 67 1e-009

emb|CAE62909.1| Hypothetical protein CBG07101 [Caenorhabdit... 60 1e-007

emb|CAE70527.1| Hypothetical protein CBG17156 [Caenorhabdit... 58 4e-007

emb|CAA33190.1| unnamed protein product [Crithidia fascicul... 55 4e-006

gb|AAA31881.1| A 'c' was inserted after nt 369 (=nt 10459 i... 53 1e-005

emb|CAE71792.1| Hypothetical protein CBG18801 [Caenorhabdit... 53 1e-005

emb|CAE72901.1| Hypothetical protein CBG20215 [Caenorhabdit... 52 3e-005

>emb|CAE73829.1| Hypothetical protein CBG21394 [Caenorhabditis briggsae]

Length = 1108


Score = 79.0 bits (193), Expect = 2e-013

Identities = 54/137 (39%), Positives = 77/137 (56%), Gaps = 14/137 (10%)

Frame = -2
Query: 754 KKYKNPKYP--KYPKIQKSKNPKISK-----IQKSKNPKIQKSKNPKIQKSKNPKIQ--- 605

+K KNPK K P+IQ+SKNP+I K IQ+SKNP+IQ+SKNP+IQ+SKNP+IQ

Sbjct: 293 QKSKNPKIQESKNPRIQESKNPRIQKSKNPRIQESKNPRIQESKNPRIQESKNPRIQESK 352
Query: 604 ---IQNLKNPKKKKTQSQITAQNPNKKC-KF*ISKIPKNLNNHNLQSKTKIQNIKREIEM 437

IQ KNP+ +K+++ ++ N K K +I K+ N +SK + +

Sbjct: 353 NARIQESKNPRIQKSKNPRIQESKNPKIQKSENPRIQKSKNPRIQESKNPRIQESKNPRI 412
Query: 436 LHGVTSKGNENNQRKNP 386

SK + KNP


Sbjct: 413 QESQESKNPRIQESKNP 429

---------------

gnl|ti|818412092 name:POAA-aab62h05.g1

mate_pair:818412432

(891 letters)

Score E


Sequences producing significant alignments: (bits) Value
ref|XP_762133.1| hypothetical protein UM05986.1 [Ustilago m... 89 2e-016

gb|AAW45017.1| proteasome subunit alpha type 5, putative [C... 87 6e-016

ref|XP_647379.1| hypothetical protein DDB0216562 [Dictyoste... 87 8e-016

ref|XP_624341.1| PREDICTED: similar to proteasome subunit, ... 87 8e-016

ref|XP_663476.1| hypothetical protein AN5872.2 [Aspergillus... 86 2e-015

ref|XP_782337.1| PREDICTED: similar to Proteasome subunit a... 85 4e-015

ref|XP_367205.1| hypothetical protein MG07130.4 [Magnaporth... 84 5e-015

gb|EAL93438.1| proteasome component Pup2, putative [Aspergi... 84 9e-015

gb|AAP06025.1| similar to NM_011967 proteasome (prosome, ma... 84 9e-015

gb|EAA74723.1| conserved hypothetical protein [Gibberella z... 84 9e-015

>ref|XP_762133.1| hypothetical protein UM05986.1 [Ustilago maydis 521]

gb|EAK86958.1| hypothetical protein UM05986.1 [Ustilago maydis 521]

Length = 250
Score = 89.4 bits (220), Expect = 2e-016

Identities = 42/59 (71%), Positives = 49/59 (83%)

Frame = +1
Query: 193 ESLSTTYTL*SRPFGVALLVAGIDENGPQLYHTDPSGTFIQFDAKAIGGGSEGAQTTLQ 369

ES + + SRPFGVALL+AGIDE GPQL+H DPSGTF+++DAKAIG GSEGAQT LQ

Sbjct: 125 ESTAGDEAMMSRPFGVALLIAGIDEKGPQLFHADPSGTFVRYDAKAIGSGSEGAQTELQ 183

--------------------

gnl|ti|818412433 name:POAA-aab62h06.b1

mate_pair:818412093

(924 letters)

Score E


Sequences producing significant alignments: (bits) Value
gb|AAL02033.1| chloramphenicol acetyl transferase [Template... 85 4e-015

---------

gnl|ti|818412098 name:POAA-aab62h11.g1

mate_pair:818412438

(891 letters)

Score E


Sequences producing significant alignments: (bits) Value
gb|AAF59456.3| Hypothetical protein Y37E11AM.1 [Caenorhabdi... 56 1e-006

emb|CAE63756.1| Hypothetical protein CBG08291 [Caenorhabdit... 56 1e-006

ref|XP_428039.1| PREDICTED: similar to anaphylatoxin C5a re... 53 2e-005

ref|XP_791731.1| PREDICTED: similar to DEAH (Asp-Glu-Ala-Hi... 50 1e-004

emb|CAG09044.1| unnamed protein product [Tetraodon nigrovir... 50 1e-004

gb|EAA01125.2| ENSANGP00000016870 [Anopheles gambiae str. P... 49 2e-004

gb|AAF48954.2| CG32533-PA [Drosophila melanogaster] >gi|161... 49 2e-004

ref|XP_541537.2| PREDICTED: similar to DEAH (Asp-Glu-Ala-Hi... 49 2e-004

ref|XP_397034.2| PREDICTED: similar to ENSANGP00000016870 [... 49 2e-004

gb|EAL38616.1| ENSANGP00000029361 [Anopheles gambiae str. P... 49 2e-004

>gb|AAF59456.3| Hypothetical protein Y37E11AM.1 [Caenorhabditis elegans]

ref|NP_500405.2| Y37E11AM.1 [Caenorhabditis elegans]

Length = 1037
Score = 56.2 bits (134), Expect = 1e-006

Identities = 27/36 (75%), Positives = 30/36 (83%)

Frame = -1
Query: 273 KSTQLAQY*LKAGYTRIACTQPRRIATMALCRRVAY 166

KSTQ+ QY LKAG+T +ACTQPRRIA AL RRVAY

Sbjct: 121 KSTQVPQYLLKAGFTGVACTQPRRIACTALARRVAY 156

Score = 39.7 bits (91), Expect = 0.14

Identities = 17/32 (53%), Positives = 23/32 (71%)

Frame = -2


Query: 539 QVNLPIFKFKNDIITALQTNNVIVVAGDTGCG 444

Q LPI + +I+ L+TN V++VAGDTGCG

Sbjct: 89 QKELPIAERAGEIVELLKTNQVLIVAGDTGCG 120

-------------------

gnl|ti|820217484 name:POAA-aab63a02.b1

mate_pair:818413956

(909 letters)

Score E


Sequences producing significant alignments: (bits) Value
gb|AAI08642.1| Unknown (protein for MGC:131328) [Xenopus la... 58 4e-007

ref|NP_001011220.1| hypothetical protein LOC496655 [Xenopus... 58 5e-007

ref|YP_200400.1| copper homeostasis protein [Xanthomonas or... 57 7e-007

ref|YP_364952.1| Copper homeostasis protein [Xanthomonas ca... 57 7e-007

ref|NP_643400.1| copper homeostasis protein [Xanthomonas ax... 57 7e-007

sp|Q8PI07|CUTC_XANAC Copper homeostasis protein cutC 57 7e-007

ref|YP_242285.1| copper homeostasis protein [Xanthomonas ca... 57 9e-007

ref|ZP_00683322.1| CutC [Xylella fastidiosa Ann-1] >gi|7172... 56 2e-006

ref|ZP_00681371.1| CutC [Xylella fastidiosa Ann-1] >gi|7173... 56 2e-006

pdb|1X8C|B Chain B, Crystal Structure Of The Semet-Derivati... 56 2e-006

>gb|AAI08642.1| Unknown (protein for MGC:131328) [Xenopus laevis]

Length = 252


Score = 58.2 bits (139), Expect = 4e-007

Identities = 23/47 (48%), Positives = 36/47 (76%)

Frame = +2
Query: 662 GLTPSVGMIQAVRSRIKIPLFVLIRPRAGDFCYDEAEFDIIKTGMPL 802

G+TPSVG++Q V+ ++IP+FV+IRPR GDF Y + E +++K + L

Sbjct: 39 GITPSVGLLQVVKQYVQIPIFVMIRPRGGDFLYSDREVEVMKADIRL 85

----------------

gnl|ti|820217485 name:POAA-aab63a03.b1

mate_pair:818413957

(900 letters)

Score E


Sequences producing significant alignments: (bits) Value
ref|XP_646632.1| putative GATA-binding transcription factor... 51 6e-005

ref|XP_640565.1| putative GATA-binding transcription factor... 49 2e-004

ref|XP_637400.1| putative GATA-binding transcription factor... 49 3e-004

ref|XP_642534.1| putative GATA-binding transcription factor... 46 0.002

ref|XP_761920.1| hypothetical protein UM05773.1 [Ustilago m... 45 0.003

ref|XP_646970.1| putative GATA-binding transcription factor... 45 0.004

ref|XP_642533.1| putative GATA-binding transcription factor... 44 0.010

ref|XP_636120.1| hypothetical protein DDB0220608 [Dictyoste... 44 0.010

emb|CAG89885.1| unnamed protein product [Debaryomyces hanse... 42 0.022

dbj|BAD83848.1| GATA zinc finger protein [Dictyostelium dis... 42 0.029

>ref|XP_646632.1| putative GATA-binding transcription factor [Dictyostelium

discoideum]

gb|EAL72728.1| putative GATA-binding transcription factor [Dictyostelium

discoideum]

Length = 1006
Score = 50.8 bits (120), Expect = 6e-005

Identities = 19/40 (47%), Positives = 24/40 (60%)

Frame = +3
Query: 426 PPPETSSSHKRKHKSISSQGQYCRSCGTTQTPEWRRGPDG 545

P P +H+R+ +I YC +CGT TPEWRRGP G

Sbjct: 820 PHPPVKKTHRRRPANIDKSTLYCHNCGTKNTPEWRRGPSG 859

------------

gnl|ti|820217510 name:POAA-aab63c07.b1

mate_pair:818413983

(916 letters)

Score E


Sequences producing significant alignments: (bits) Value

dbj|BAB62718.1| plerocercoid growth factor/cysteine proteas... 82 2e-014

gb|AAR12010.1| cathepsin L-like proteinase [Triatoma infest... 82 3e-014

ref|XP_801784.1| PREDICTED: similar to cathepsin L, a isofo... 81 6e-014

ref|XP_779916.1| PREDICTED: similar to cathepsin L, a isofo... 81 6e-014

emb|CAE47501.1| cathepsin L-like proteinase [Diabrotica vir... 80 1e-013

gb|AAL34984.1| cathepsine L-like cysteine protease [Rhodniu... 80 1e-013

emb|CAE53701.1| cathepsin S precursor [Platichthys flesus] 79 2e-013

emb|CAE53700.1| cysteine proteinase precursor [Platichthys ... 79 2e-013

gb|AAB17051.1| cysteine protease 79 3e-013

dbj|BAA09821.1| cysteine proteinase [Spirometra erinaceieur... 79 3e-013

>dbj|BAB62718.1| plerocercoid growth factor/cysteine protease [Spirometra

erinaceieuropaei]

dbj|BAB62799.1| plerocercoid growth factor-2/cysteine protease [Spirometra

erinaceieuropaei]

Length = 336


Score = 82.4 bits (202), Expect = 2e-014

Identities = 33/46 (71%), Positives = 40/46 (86%)

Frame = +2
Query: 95 GTENGKDYWLAKNSFGENWGEGGYIKMARNKNNQCGIATMASYPNM 232

G ENG+ YWL KNS+G +WGEGGY+KMARN+NN CGIA+MASYP +

Sbjct: 291 GAENGEAYWLVKNSWGSSWGEGGYVKMARNRNNMCGIASMASYPTV 336

-------------------

gnl|ti|820217518 name:POAA-aab63d04.b1

mate_pair:818413991

(842 letters)

Score E


Sequences producing significant alignments: (bits) Value

ref|YP_309947.1| IS1 ORF [Shigella sonnei Ss046] >gi|738550... 387 e-106

ref|NP_417902.1| IS1 protein InsB [Escherichia coli K12] >g... 345 1e-093

ref|NP_863025.1| InsBcp3 [Escherichia coli] >gi|28629340|gb... 344 2e-093

ref|NP_863037.1| InsBcp5 [Escherichia coli] >gi|28629352|gb... 343 4e-093

emb|CAD09734.1| putative IS1 transposase [Salmonella enteri... 342 7e-093

ref|YP_311280.1| IS1 ORF [Shigella sonnei Ss046] >gi|743128... 342 9e-093

ref|ZP_00717021.1| COG1662: Transposase and inactivated der... 342 1e-092

ref|YP_313456.1| IS1 ORF2 [Shigella sonnei Ss046] >gi|74314... 341 2e-092

ref|ZP_00706818.1| COG1662: Transposase and inactivated der... 341 2e-092

ref|ZP_00702652.1| COG1662: Transposase and inactivated der... 341 2e-092

>ref|YP_309947.1| IS1 ORF [Shigella sonnei Ss046]

gb|AAZ87712.1| IS1 ORF [Shigella sonnei Ss046]

Length = 194


Score = 387 bits (995), Expect = e-106

Identities = 184/190 (96%), Positives = 186/190 (97%)

Frame = +1
Query: 31 AVHLHRFSTRYAPEHY*YGHEWRWMPGNRPHYGRWPQHDFTSLKKLRPQSVTSRIQPGSD 210

AV LHRFSTRYAPE++ YGHEWRWMPGN HYGRWPQHDFTSLKKLRPQSVTSRIQPGSD

Sbjct: 4 AVRLHRFSTRYAPENHLYGHEWRWMPGNCTHYGRWPQHDFTSLKKLRPQSVTSRIQPGSD 63
Query: 211 VIVCAEMDEQWGYVGAKSRQRWLFYAYDSLRKTVVAHVFGERTMATLGRLMSLLSPFDVV 390

VIVCAEMDEQWGYVGAKSRQRWLFYAYDSLRKTVVAHVFGERTMATLGRLMSLLSPFDVV

Sbjct: 64 VIVCAEMDEQWGYVGAKSRQRWLFYAYDSLRKTVVAHVFGERTMATLGRLMSLLSPFDVV 123
Query: 391 IWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLGRKSLSFSKSVELHDKV 570

IWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLGRKSLSFSKSVELHDKV

Sbjct: 124 IWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLGRKSLSFSKSVELHDKV 183
Query: 571 IGHYLNIKHY 600

IGHYLNIKHY

Sbjct: 184 IGHYLNIKHY 193

-------------

gnl|ti|818413991 name:POAA-aab63d04.g1

mate_pair:820217518

(800 letters)

Score E


Sequences producing significant alignments: (bits) Value

ref|YP_309947.1| IS1 ORF [Shigella sonnei Ss046] >gi|738550... 342 7e-093

ref|NP_863025.1| InsBcp3 [Escherichia coli] >gi|28629340|gb... 330 4e-089

ref|YP_313456.1| IS1 ORF2 [Shigella sonnei Ss046] >gi|74314... 330 4e-089

ref|NP_417902.1| IS1 protein InsB [Escherichia coli K12] >g... 330 4e-089

ref|ZP_00733597.1| COG1662: Transposase and inactivated der... 330 4e-089

ref|YP_311280.1| IS1 ORF [Shigella sonnei Ss046] >gi|743128... 330 4e-089

ref|YP_312749.1| IS1 ORF [Shigella sonnei Ss046] >gi|743129... 328 1e-088

ref|YP_312350.1| IS1 ORF [Shigella sonnei Ss046] >gi|743122... 328 1e-088

ref|YP_312038.1| IS1 ORF [Shigella sonnei Ss046] >gi|738570... 328 1e-088

ref|YP_309727.1| IS1 ORF [Shigella sonnei Ss046] >gi|738547... 328 1e-088

>ref|YP_309947.1| IS1 ORF [Shigella sonnei Ss046]

gb|AAZ87712.1| IS1 ORF [Shigella sonnei Ss046]

Length = 194


Score = 342 bits (878), Expect = 7e-093

Identities = 171/187 (91%), Positives = 171/187 (91%)

Frame = -1
Query: 791 FSTRVPQPENH*YGPEWALDARATAVIMGRWPQHDFTSLKKLRPQSVTSRIQPGSDVIVC 612

FSTR PENH YG EW GRWPQHDFTSLKKLRPQSVTSRIQPGSDVIVC

Sbjct: 10 FSTRYA-PENHLYGHEWRW-MPGNCTHYGRWPQHDFTSLKKLRPQSVTSRIQPGSDVIVC 67
Query: 611 AEMDEQWGYVGAKSRQRWLFYAYDSLRKTVVAHVFGERTMATLGRLMSLLSPFDVVIWMT 432

AEMDEQWGYVGAKSRQRWLFYAYDSLRKTVVAHVFGERTMATLGRLMSLLSPFDVVIWMT

Sbjct: 68 AEMDEQWGYVGAKSRQRWLFYAYDSLRKTVVAHVFGERTMATLGRLMSLLSPFDVVIWMT 127
Query: 431 DGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLGRKSLSFSKSVELHDKVIGHY 252

DGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLGRKSLSFSKSVELHDKVIGHY

Sbjct: 128 DGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLGRKSLSFSKSVELHDKVIGHY 187
Query: 251 LNIKHYQ 231

LNIKHYQ


Sbjct: 188 LNIKHYQ 194

------------

gnl|ti|820217523 name:POAA-aab63d09.b1

mate_pair:818413996

(905 letters)

Score E


Sequences producing significant alignments: (bits) Value

ref|YP_309947.1| IS1 ORF [Shigella sonnei Ss046] >gi|738550... 392 e-108

------------

gnl|ti|818413996 name:POAA-aab63d09.g1

mate_pair:820217523

(902 letters)


Score E


Sequences producing significant alignments: (bits) Value

ref|YP_309947.1| IS1 ORF [Shigella sonnei Ss046] >gi|738550... 394 e-108

------------

gnl|ti|818414007 name:POAA-aab63e08.g1

mate_pair:820217534

(921 letters)


Score E


Sequences producing significant alignments: (bits) Value

ref|XP_779282.1| GLP_587_50044_49331 [Giardia lamblia ATCC ... 61 6e-008

ref|XP_791188.1| PREDICTED: similar to Parkin coregulated g... 60 1e-007

emb|CAJ05572.1| hypothetical protein, conserved [Leishmania... 58 4e-007

gb|EAN99013.1| hypothetical protein, conserved [Trypanosoma... 58 5e-007

gb|AAX80688.1| hypothetical protein, conserved [Trypanosoma... 57 9e-007

ref|XP_625146.1| PREDICTED: similar to Zgc:101786 [Apis mel... 57 9e-007

gb|AAH85440.1| Zgc:101786 [Danio rerio] >gi|55925315|ref|NP... 56 2e-006

ref|XP_419614.1| PREDICTED: similar to PACRG [Gallus gallus] 55 3e-006

ref|XP_784874.1| PREDICTED: similar to Parkin coregulated g... 55 5e-006

dbj|BAE22559.1| unnamed protein product [Mus musculus] 55 5e-006

>ref|XP_779282.1| GLP_587_50044_49331 [Giardia lamblia ATCC 50803]

gb|EAA42471.1| GLP_587_50044_49331 [Giardia lamblia ATCC 50803]

Length = 237


Score = 60.8 bits (146), Expect = 6e-008

Identities = 27/49 (55%), Positives = 37/49 (75%)

Frame = +2
Query: 404 LKETDKPYKFLAREGVSNMLDRGRSKILPVIPQLIIPIKSMIFPPPPPI 550

L+E D PY FLAREGV+N+L+ G SK+LPVIPQLI+P+ + + P +

Sbjct: 98 LREKDHPYAFLAREGVTNLLEHGGSKVLPVIPQLILPLHAALETRDPEV 146

Score = 50.4 bits (119), Expect = 9e-005

Identities = 21/32 (65%), Positives = 25/32 (78%)

Frame = +3


Query: 57 NVVEFAGSNKIQWKVEIEKLDYHHYLPIFFDG 152

+V A NKI WK EIE+LD+HHYLPIFF+G

Sbjct: 66 SVEHTASGNKIIWKAEIEQLDFHHYLPIFFEG 97

--------------------

gnl|ti|820217540 name:POAA-aab63f02.b1

mate_pair:818414011

(938 letters)

Score E


Sequences producing significant alignments: (bits) Value

ref|YP_283687.1| Response regulator receiver:ATP-binding re... 60 1e-007

ref|ZP_00150184.1| COG0642: Signal transduction histidine k... 60 1e-007

ref|ZP_00585281.1| PAS [Shewanella amazonensis SB2B] >gi|68... 57 7e-007

ref|NP_716490.1| sensory box histidine kinase/response regu... 55 4e-006

dbj|BAB75460.1| two-component hybrid sensor and regulator [... 55 4e-006

ref|ZP_00855004.1| PAS [Shewanella sp. MR-7] >gi|78510268|g... 55 4e-006

ref|ZP_00849349.1| PAS [Shewanella sp. ANA-3] >gi|78507503|... 55 4e-006

ref|YP_322082.1| Multi-sensor Hybrid Histidine Kinase [Anab... 55 4e-006

gb|EAP46058.1| PAS [Shewanella sp. MR-4] 55 4e-006

ref|ZP_00583064.1| PAS [Shewanella baltica OS155] >gi|68518... 55 5e-006

>ref|YP_283687.1| Response regulator receiver:ATP-binding region,

ATPase-like:Histidine kinase A, N-terminal

[Dechloromonas aromatica RCB]

gb|AAZ45217.1| Response regulator receiver:ATP-binding region,

ATPase-like:Histidine kinase A, N-terminal

[Dechloromonas aromatica RCB]

Length = 835


Score = 60.1 bits (144), Expect = 1e-007

Identities = 28/45 (62%), Positives = 35/45 (77%)

Frame = +3
Query: 51 DPNTANVEFRISDSGVGLTVPQQLCLFKPFFQADTSTTRKVGGTG 185

D TA +EF +SDSG+G+ V +Q LFKPF QAD+STTR+ GGTG

Sbjct: 598 DRGTALLEFSVSDSGIGIPVDKQSLLFKPFSQADSSTTREYGGTG 642

------------

gnl|ti|818414024 name:POAA-aab63g05.g1

mate_pair:820217554

(901 letters)

Score E


Sequences producing significant alignments: (bits) Value

gb|AAK13589.1| rRNA intron-encoded homing endonuclease [Ory... 52 4e-005

ref|XP_525925.1| PREDICTED: similar to rRNA intron-encoded ... 50 1e-004

gb|AAL31950.1| CDH1-D [Gallus gallus] 50 1e-004

emb|CAH00948.1| unnamed protein product [Kluyveromyces lact... 42 0.022

emb|CAH00942.1| unnamed protein product [Kluyveromyces lact... 42 0.022

ref|XP_578848.1| PREDICTED: similar to Ac1147 [Rattus norve... 41 0.065

ref|XP_578845.1| PREDICTED: similar to Ac1147 [Rattus norve... 41 0.065

ref|ZP_00396973.1| hypothetical protein DgeoDRAFT_0651 [Dei... 39 0.25

gb|EAL83773.1| hypothetical protein DgeoDRAFT_1879 [Deinoco... 39 0.25

gb|AAN36071.1| hypothetical protein PF11_0493 [Plasmodium f... 37 1.2

>gb|AAK13589.1| rRNA intron-encoded homing endonuclease [Oryza sativa]

Length = 66
Score = 51.6 bits (122), Expect = 4e-005

Identities = 24/35 (68%), Positives = 28/35 (80%)

Frame = -1
Query: 556 VSISTPSGPWRNHESMGSGGSMVARLKLKGIDGRA 452

V+ TP P+ +S+GSGGSMVARLKLKGIDGRA

Sbjct: 24 VAYRTPPAPYEKSKSLGSGGSMVARLKLKGIDGRA 58

Score = 35.4 bits (80), Expect = 2.7

Identities = 28/66 (42%), Positives = 35/66 (53%), Gaps = 4/66 (6%)

Frame = -3


Query: 614 RRSDTVVVLTINDADQG*DSVHLDSFRT----LEKSRVYGFWGEYGRKAET*RN*RKGTQ 447

RRSDTV+V TINDADQG V ++RT EKS+ G G + + +

Sbjct: 4 RRSDTVLVSTINDADQGSADV---AYRTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPP 60
Query: 446 RVEPAA 429

VEPAA


Sbjct: 61 GVEPAA 66

---------------

gnl|ti|818414221 name:POAA-aab64a06.b1

mate_pair:818414565

(901 letters)

Score E


Sequences producing significant alignments: (bits) Value

dbj|BAD73369.1| MAP3K delta-1 protein kinase-like [Oryza sa... 50 1e-004

ref|XP_636073.1| putative tyrosine kinase-like protein [Dic... 50 1e-004

ref|XP_647094.1| putative tyrosine kinase-like protein [Dic... 49 2e-004

gb|AAN61142.1| EDR1 [Oryza sativa (japonica cultivar-group)] 48 5e-004

gb|AAK30005.1| CTR2 protein kinase [Rosa hybrid cultivar] 48 5e-004

gb|AAG31141.1| EDR1 [Oryza sativa] 48 5e-004

dbj|BAD28881.1| CTR1-like kinase kinase kinase-like [Oryza ... 48 5e-004

gb|ABA95349.1| protein kinase, putative [Oryza sativa (japo... 48 5e-004

gb|ABA95348.1| protein kinase, putative [Oryza sativa (japo... 48 5e-004

ref|NP_849424.1| ATP binding / protein kinase/ protein seri... 47 7e-004

>dbj|BAD73369.1| MAP3K delta-1 protein kinase-like [Oryza sativa (japonica

cultivar-group)]

Length = 376


Score = 50.1 bits (118), Expect = 1e-004

Identities = 25/50 (50%), Positives = 34/50 (68%)

Frame = -2
Query: 819 LRHPNIVLFMGMCLVPENNELLLVMELMERGSLHDIIHNKKVKMKKSRRK 670

LRHPN++LF+G C+VP + L +V E ME GSL+ +IH K K S R+

Sbjct: 172 LRHPNVILFLGACMVPPH--LSMVTEYMEMGSLYYLIHMSGQKKKLSWRR 219

----------------

gnl|ti|818414583 name:POAA-aab64c03.g1

mate_pair:818414240

(897 letters)

Score E


Sequences producing significant alignments: (bits) Value

gb|AAK13589.1| rRNA intron-encoded homing endonuclease [Ory... 52 4e-005

ref|XP_525925.1| PREDICTED: similar to rRNA intron-encoded ... 50 1e-004

gb|AAL31950.1| CDH1-D [Gallus gallus] 50 1e-004

emb|CAH00949.1| unnamed protein product [Kluyveromyces lact... 49 2e-004

ref|XP_523367.1| PREDICTED: similar to rRNA intron-encoded ... 49 2e-004

emb|CAH00948.1| unnamed protein product [Kluyveromyces lact... 42 0.022

emb|CAH00942.1| unnamed protein product [Kluyveromyces lact... 42 0.022

ref|ZP_00396973.1| hypothetical protein DgeoDRAFT_0651 [Dei... 39 0.24

gb|EAL83773.1| hypothetical protein DgeoDRAFT_1879 [Deinoco... 39 0.24

gb|AAN36071.1| hypothetical protein PF11_0493 [Plasmodium f... 37 1.2

>gb|AAK13589.1| rRNA intron-encoded homing endonuclease [Oryza sativa]

Length = 66
Score = 51.6 bits (122), Expect = 4e-005

Identities = 24/35 (68%), Positives = 28/35 (80%)

Frame = -1
Query: 381 VSISTPSGPWRNHESMGSGGSMVARLKLKGIDGRA 277

V+ TP P+ +S+GSGGSMVARLKLKGIDGRA

Sbjct: 24 VAYRTPPAPYEKSKSLGSGGSMVARLKLKGIDGRA 58

Score = 35.4 bits (80), Expect = 2.7

Identities = 28/66 (42%), Positives = 35/66 (53%), Gaps = 4/66 (6%)

Frame = -3


Query: 439 RRSDTVVVLTINDADQG*DSVHLDSFRT----LEKSRVYGFWGEYGRKAET*RN*RKGTQ 272

RRSDTV+V TINDADQG V ++RT EKS+ G G + + +

Sbjct: 4 RRSDTVLVSTINDADQGSADV---AYRTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPP 60
Query: 271 RVEPAA 254

VEPAA


Sbjct: 61 GVEPAA 66

---------------

gnl|ti|818414242 name:POAA-aab64c05.b1


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